RNA–Protein interactions for RNA: ENST00000448183.6

NEDD9-204, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best)

Gene NEDD9, Length 4,934 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-204ENST00000448183 ADGRF2Q8IZF7 708 aa7.96□□□□□ -1.14
NEDD9-204ENST00000448183 ST13P5Q8NFI4 369 aaPredicted RBP7.96□□□□□ -1.14
NEDD9-204ENST00000448183 MRPL48Q96GC5 212 aaKnown RBP7.96□□□□□ -1.14
NEDD9-204ENST00000448183 GMCL1Q96IK5 515 aa7.96□□□□□ -1.14
NEDD9-204ENST00000448183 L3MBTL3Q96JM7 780 aaPredicted RBP7.96□□□□□ -1.14
NEDD9-204ENST00000448183 PNMA5Q96PV4 448 aa7.96□□□□□ -1.14
NEDD9-204ENST00000448183 ACOX2Q99424 681 aa7.96□□□□□ -1.14
NEDD9-204ENST00000448183 SMAD5Q99717 465 aaKnown RBP7.96□□□□□ -1.14
NEDD9-204ENST00000448183 COQ7Q99807 217 aa7.96□□□□□ -1.14
NEDD9-204ENST00000448183 SPRTNQ9H040 489 aaPredicted RBP7.96□□□□□ -1.14
NEDD9-204ENST00000448183 NOL6Q9H6R4 1146 aaKnown RBP7.96□□□□□ -1.14
NEDD9-204ENST00000448183 NT5MQ9NPB1 228 aa7.96□□□□□ -1.14
NEDD9-204ENST00000448183 ANKRD6Q9Y2G4 727 aa7.96□□□□□ -1.14
NEDD9-204ENST00000448183 C2CD2Q9Y426 696 aa7.96□□□□□ -1.14
NEDD9-204ENST00000448183 LRRIQ1Q96JM4 1722 aa7.96□□□□□ -1.14
NEDD9-204ENST00000448183 AK9Q5TCS8 1911 aa7.96□□□□□ -1.14
NEDD9-204ENST00000448183 WDR27A2RRH5 827 aa7.96□□□□□ -1.14
NEDD9-204ENST00000448183 MSH3P20585 1137 aa7.96□□□□□ -1.14
NEDD9-204ENST00000448183 MGAT1P26572 445 aa7.96□□□□□ -1.14
NEDD9-204ENST00000448183 ST13P50502 369 aaKnown RBP7.96□□□□□ -1.14
NEDD9-204ENST00000448183 CCNG1P51959 295 aa7.96□□□□□ -1.14
NEDD9-204ENST00000448183 ITGB3BPQ13352 177 aaPredicted RBP7.96□□□□□ -1.14
NEDD9-204ENST00000448183 CAMK2GQ13555 558 aaPredicted RBP7.96□□□□□ -1.14
NEDD9-204ENST00000448183 TAF1CQ15572 869 aaPredicted RBP7.96□□□□□ -1.14
NEDD9-204ENST00000448183 TTC27Q6P3X3 843 aa7.96□□□□□ -1.14
NEDD9-204ENST00000448183 ZCCHC23Q6ZST2 131 aa7.96□□□□□ -1.14
NEDD9-204ENST00000448183 SMIM5Q71RC9 77 aa7.96□□□□□ -1.14
NEDD9-204ENST00000448183 ZDHHC13Q8IUH4 622 aa7.96□□□□□ -1.14
NEDD9-204ENST00000448183 ARHGEF19Q8IW93 802 aa7.96□□□□□ -1.14
NEDD9-204ENST00000448183 FBXO39Q8N4B4 442 aa7.96□□□□□ -1.14
NEDD9-204ENST00000448183 DPP10Q8N608 796 aa7.96□□□□□ -1.14
NEDD9-204ENST00000448183 SPPL2AQ8TCT8 520 aa7.96□□□□□ -1.14
NEDD9-204ENST00000448183 ACER1Q8TDN7 264 aa7.96□□□□□ -1.14
NEDD9-204ENST00000448183 GRIP2Q9C0E4 1043 aa7.96□□□□□ -1.14
NEDD9-204ENST00000448183 REXO4Q9GZR2 422 aaKnown RBP7.96□□□□□ -1.14
NEDD9-204ENST00000448183 CHST7Q9NS84 486 aa7.96□□□□□ -1.14
NEDD9-204ENST00000448183 LIMD1Q9UGP4 676 aa7.96□□□□□ -1.14
NEDD9-204ENST00000448183 SPATA2Q9UM82 520 aa7.96□□□□□ -1.14
NEDD9-204ENST00000448183 IQSEC2Q5JU85 1478 aa7.96□□□□□ -1.14
NEDD9-204ENST00000448183 CLTCQ00610 1675 aaKnown RBP7.95□□□□□ -1.14
NEDD9-204ENST00000448183 PDE2AO00408 941 aaPredicted RBP7.95□□□□□ -1.14
NEDD9-204ENST00000448183 TKTP29401 623 aaKnown RBP7.95□□□□□ -1.14
NEDD9-204ENST00000448183 NUP62P37198 522 aaPredicted RBP7.95□□□□□ -1.14
NEDD9-204ENST00000448183 HALP42357 657 aa7.95□□□□□ -1.14
NEDD9-204ENST00000448183 IL12RB1P42701 662 aa7.95□□□□□ -1.14
NEDD9-204ENST00000448183 NR2C2P49116 596 aa7.95□□□□□ -1.14
NEDD9-204ENST00000448183 MRPS22P82650 360 aaKnown RBP7.95□□□□□ -1.14
NEDD9-204ENST00000448183 RNF43Q68DV7 783 aa7.95□□□□□ -1.14
NEDD9-204ENST00000448183 WDR36Q8NI36 951 aaKnown RBP7.95□□□□□ -1.14
NEDD9-204ENST00000448183 TRPC4APQ8TEL6 797 aa7.95□□□□□ -1.14
NEDD9-204ENST00000448183 PYDC1Q8WXC3 89 aa7.95□□□□□ -1.14
NEDD9-204ENST00000448183 FBXO32Q969P5 355 aa7.95□□□□□ -1.14
NEDD9-204ENST00000448183 SERHL2Q9H4I8 314 aa7.95□□□□□ -1.14
NEDD9-204ENST00000448183 WDR41Q9HAD4 459 aa7.95□□□□□ -1.14
NEDD9-204ENST00000448183 FANCEQ9HB96 536 aa7.95□□□□□ -1.14
NEDD9-204ENST00000448183 NMRAL1Q9HBL8 299 aa7.95□□□□□ -1.14
NEDD9-204ENST00000448183 SERHLQ9NQF3 203 aa7.95□□□□□ -1.14
NEDD9-204ENST00000448183 CCDC167Q9P0B6 97 aa7.95□□□□□ -1.14
NEDD9-204ENST00000448183 MCM8Q9UJA3 840 aa7.95□□□□□ -1.14
NEDD9-204ENST00000448183 KCNH4Q9UQ05 1017 aa7.95□□□□□ -1.14
NEDD9-204ENST00000448183 KLHL20Q9Y2M5 609 aa7.95□□□□□ -1.14
NEDD9-204ENST00000448183 PTGES3LE9PB15 166 aa7.95□□□□□ -1.14
NEDD9-204ENST00000448183 APOC4-APOC2K7ER74 178 aa7.95□□□□□ -1.14
NEDD9-204ENST00000448183 TK2O00142 265 aa7.95□□□□□ -1.14
NEDD9-204ENST00000448183 HS6ST1O60243 411 aa7.95□□□□□ -1.14
NEDD9-204ENST00000448183 NPM3O75607 178 aaKnown RBP7.95□□□□□ -1.14
NEDD9-204ENST00000448183 APOC2P02655 101 aa7.95□□□□□ -1.14
NEDD9-204ENST00000448183 DNAJB2P25686 324 aa7.95□□□□□ -1.14
NEDD9-204ENST00000448183 ST3GAL1Q11201 340 aa7.95□□□□□ -1.14
NEDD9-204ENST00000448183 MSLNQ13421 630 aaPredicted RBP7.95□□□□□ -1.14
NEDD9-204ENST00000448183 FRG1Q14331 258 aaKnown RBP7.95□□□□□ -1.14
NEDD9-204ENST00000448183 MARC1Q5VT66 337 aa7.95□□□□□ -1.14
NEDD9-204ENST00000448183 TMC7Q7Z402 723 aa7.95□□□□□ -1.14
NEDD9-204ENST00000448183 CYP4Z2PQ8N1L4 340 aa7.95□□□□□ -1.14
NEDD9-204ENST00000448183 FNDC5Q8NAU1 212 aa7.95□□□□□ -1.14
NEDD9-204ENST00000448183 ZNF398Q8TD17 642 aa7.95□□□□□ -1.14
NEDD9-204ENST00000448183 FNIP1Q8TF40 1166 aa7.95□□□□□ -1.14
NEDD9-204ENST00000448183 PARK7Q99497 189 aaKnown RBP7.95□□□□□ -1.14
NEDD9-204ENST00000448183 ADGRE3Q9BY15 652 aa7.95□□□□□ -1.14
NEDD9-204ENST00000448183 UNKQ9C0B0 810 aaKnown RBP7.95□□□□□ -1.14
NEDD9-204ENST00000448183 CLEC4MQ9H2X3 399 aaPredicted RBP7.95□□□□□ -1.14
NEDD9-204ENST00000448183 RAD21L1Q9H4I0 556 aa7.95□□□□□ -1.14
NEDD9-204ENST00000448183 MID1IP1Q9NPA3 183 aa7.95□□□□□ -1.14
NEDD9-204ENST00000448183 SCUBE2Q9NQ36 999 aa7.95□□□□□ -1.14
NEDD9-204ENST00000448183 ITGB1BP2Q9UKP3 347 aa7.95□□□□□ -1.14
NEDD9-204ENST00000448183 TRHDEQ9UKU6 1024 aa7.95□□□□□ -1.14
NEDD9-204ENST00000448183 DYRK1BQ9Y463 629 aa7.95□□□□□ -1.14
NEDD9-204ENST00000448183 SYNCRIPO60506 623 aaKnown RBP7.95□□□□□ -1.14
NEDD9-204ENST00000448183 CYP1A1P04798 512 aaPredicted RBP7.95□□□□□ -1.14
NEDD9-204ENST00000448183 ALOX12P18054 663 aa7.95□□□□□ -1.14
NEDD9-204ENST00000448183 ATP4AP20648 1035 aa7.95□□□□□ -1.14
NEDD9-204ENST00000448183 GSTT1P30711 240 aa7.95□□□□□ -1.14
NEDD9-204ENST00000448183 PRKCIP41743 596 aa7.95□□□□□ -1.14
NEDD9-204ENST00000448183 ITGA1P56199 1179 aa7.95□□□□□ -1.14
NEDD9-204ENST00000448183 TRAF3Q13114 568 aa7.95□□□□□ -1.14
NEDD9-204ENST00000448183 AUHQ13825 339 aaKnown RBP7.95□□□□□ -1.14
NEDD9-204ENST00000448183 TMEM119Q4V9L6 283 aa7.95□□□□□ -1.14
NEDD9-204ENST00000448183 FAM228AQ86W67 206 aa7.95□□□□□ -1.14
NEDD9-204ENST00000448183 CAMK1DQ8IU85 385 aa7.95□□□□□ -1.14
NEDD9-204ENST00000448183 C10orf53Q8N6V4 93 aa7.95□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms