RNA–Protein interactions for RNA: ENST00000339865.9

USP47-202, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 2 BASIC

Gene USP47, Length 7,775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-202ENST00000339865 PPM1BO75688 479 aa13.12□□□□□ -0.31
USP47-202ENST00000339865 KRT33AO76009 404 aa13.12□□□□□ -0.31
USP47-202ENST00000339865 ANXA9O76027 345 aa13.12□□□□□ -0.31
USP47-202ENST00000339865 COILP38432 576 aaPredicted RBP13.12□□□□□ -0.31
USP47-202ENST00000339865 PAN2Q504Q3 1202 aaKnown RBP13.12□□□□□ -0.31
USP47-202ENST00000339865 UBA3Q8TBC4 463 aa13.12□□□□□ -0.31
USP47-202ENST00000339865 OSCP1Q8WVF1 389 aa13.12□□□□□ -0.31
USP47-202ENST00000339865 CPVLQ9H3G5 476 aa13.12□□□□□ -0.31
USP47-202ENST00000339865 ACTR8Q9H981 624 aa13.12□□□□□ -0.31
USP47-202ENST00000339865 RASSF1Q9NS23 344 aa13.12□□□□□ -0.31
USP47-202ENST00000339865 LEMD3Q9Y2U8 911 aa13.12□□□□□ -0.31
USP47-202ENST00000339865 USP17L5A8MUK1 530 aa13.12□□□□□ -0.31
USP47-202ENST00000339865 ASS1P00966 412 aaKnown RBP13.12□□□□□ -0.31
USP47-202ENST00000339865 MYL9P24844 172 aa13.12□□□□□ -0.31
USP47-202ENST00000339865 PPP2R2BQ00005 443 aa13.12□□□□□ -0.31
USP47-202ENST00000339865 PRR5LQ6MZQ0 368 aa13.12□□□□□ -0.31
USP47-202ENST00000339865 BTBD10Q9BSF8 475 aa13.12□□□□□ -0.31
USP47-202ENST00000339865 TRIM17Q9Y577 477 aa13.12□□□□□ -0.31
USP47-202ENST00000339865 IFT140Q96RY7 1462 aa13.12□□□□□ -0.31
USP47-202ENST00000339865 SLCO1B7G3V0H7 640 aa13.12□□□□□ -0.31
USP47-202ENST00000339865 VCLP18206 1134 aa13.12□□□□□ -0.31
USP47-202ENST00000339865 MRPS22P82650 360 aaKnown RBP13.12□□□□□ -0.31
USP47-202ENST00000339865 MYBPC1Q00872 1141 aa13.12□□□□□ -0.31
USP47-202ENST00000339865 CDH18Q13634 790 aa13.12□□□□□ -0.31
USP47-202ENST00000339865 FAM20AQ96MK3 541 aa13.12□□□□□ -0.31
USP47-202ENST00000339865 BBS4Q96RK4 519 aa13.12□□□□□ -0.31
USP47-202ENST00000339865 TSPAN18Q96SJ8 248 aa13.12□□□□□ -0.31
USP47-202ENST00000339865 VTI1BQ9UEU0 232 aa13.12□□□□□ -0.31
USP47-202ENST00000339865 MAPRE3Q9UPY8 281 aa13.12□□□□□ -0.31
USP47-202ENST00000339865 UBDO15205 165 aa13.11□□□□□ -0.31
USP47-202ENST00000339865 MTSS1O43312 755 aa13.11□□□□□ -0.31
USP47-202ENST00000339865 KCNH1O95259 989 aa13.11□□□□□ -0.31
USP47-202ENST00000339865 CDKL1Q00532 357 aa13.11□□□□□ -0.31
USP47-202ENST00000339865 MTSS1LQ765P7 747 aa13.11□□□□□ -0.31
USP47-202ENST00000339865 DPY30Q9C005 99 aa13.11□□□□□ -0.31
USP47-202ENST00000339865 PABPC3Q9H361 631 aaKnown RBP13.11□□□□□ -0.31
USP47-202ENST00000339865 TMEM260Q9NX78 707 aa13.11□□□□□ -0.31
USP47-202ENST00000339865 ZNF232Q9UNY5 417 aa13.11□□□□□ -0.31
USP47-202ENST00000339865 C15orf41Q9Y2V0 281 aa13.11□□□□□ -0.31
USP47-202ENST00000339865 IQSEC1Q6DN90 963 aa13.11□□□□□ -0.31
USP47-202ENST00000339865 GUF1Q8N442 669 aaKnown RBP13.11□□□□□ -0.31
USP47-202ENST00000339865 POU5F2Q8N7G0 328 aa13.11□□□□□ -0.31
USP47-202ENST00000339865 LSM14AQ8ND56 463 aaKnown RBP13.11□□□□□ -0.31
USP47-202ENST00000339865 PIK3C3Q8NEB9 887 aa13.11□□□□□ -0.31
USP47-202ENST00000339865 CYP2C8P10632 490 aa13.11□□□□□ -0.31
USP47-202ENST00000339865 RXRGP48443 463 aa13.11□□□□□ -0.31
USP47-202ENST00000339865 RELL1Q8IUW5 271 aa13.11□□□□□ -0.31
USP47-202ENST00000339865 ADHFE1Q8IWW8 467 aa13.11□□□□□ -0.31
USP47-202ENST00000339865 SYTL5Q8TDW5 730 aaPredicted RBP13.11□□□□□ -0.31
USP47-202ENST00000339865 MTFMTQ96DP5 389 aaKnown RBP13.11□□□□□ -0.31
USP47-202ENST00000339865 TRIM2Q9C040 744 aa13.11□□□□□ -0.31
USP47-202ENST00000339865 WRBO00258 174 aa13.11□□□□□ -0.31
USP47-202ENST00000339865 RPS6KA5O75582 802 aa13.11□□□□□ -0.31
USP47-202ENST00000339865 OR5F1O95221 314 aa13.11□□□□□ -0.31
USP47-202ENST00000339865 RB1P06400 928 aa13.11□□□□□ -0.31
USP47-202ENST00000339865 EPHB2P29323 1055 aa13.11□□□□□ -0.31
USP47-202ENST00000339865 ALDH1A3P47895 512 aa13.11□□□□□ -0.31
USP47-202ENST00000339865 IL2P60568 153 aa13.11□□□□□ -0.31
USP47-202ENST00000339865 TGM3Q08188 693 aa13.11□□□□□ -0.31
USP47-202ENST00000339865 INO80DQ53TQ3 878 aaPredicted RBP13.11□□□□□ -0.31
USP47-202ENST00000339865 TFDP3Q5H9I0 405 aa13.11□□□□□ -0.31
USP47-202ENST00000339865 LRRC20Q8TCA0 184 aa13.11□□□□□ -0.31
USP47-202ENST00000339865 C17orf50Q8WW18 174 aa13.11□□□□□ -0.31
USP47-202ENST00000339865 AIF1LQ9BQI0 150 aa13.11□□□□□ -0.31
USP47-202ENST00000339865 XPR1Q9UBH6 696 aa13.11□□□□□ -0.31
USP47-202ENST00000339865 DDX20Q9UHI6 824 aaKnown RBP13.11□□□□□ -0.31
USP47-202ENST00000339865 CROTQ9UKG9 612 aa13.11□□□□□ -0.31
USP47-202ENST00000339865 CD109Q6YHK3 1445 aa13.11□□□□□ -0.31
USP47-202ENST00000339865 LTFP02788 710 aa13.11□□□□□ -0.31
USP47-202ENST00000339865 LIFRP42702 1097 aa13.11□□□□□ -0.31
USP47-202ENST00000339865 C10orf120Q5SQS8 335 aa13.11□□□□□ -0.31
USP47-202ENST00000339865 C4orf22Q6V702 233 aa13.11□□□□□ -0.31
USP47-202ENST00000339865 RD3Q7Z3Z2 195 aa13.11□□□□□ -0.31
USP47-202ENST00000339865 MAGI1Q96QZ7 1491 aaPredicted RBP13.11□□□□□ -0.31
USP47-202ENST00000339865 TTLL13PA6NNM8 815 aa13.11□□□□□ -0.31
USP47-202ENST00000339865 TBX3O15119 743 aa13.11□□□□□ -0.31
USP47-202ENST00000339865 C21orf2O43822 256 aa13.11□□□□□ -0.31
USP47-202ENST00000339865 RARBP10826 455 aa13.11□□□□□ -0.31
USP47-202ENST00000339865 UCHL3P15374 230 aa13.11□□□□□ -0.31
USP47-202ENST00000339865 MAGEA12P43365 314 aa13.11□□□□□ -0.31
USP47-202ENST00000339865 FMO5P49326 533 aa13.11□□□□□ -0.31
USP47-202ENST00000339865 NAB2Q15742 525 aa13.11□□□□□ -0.31
USP47-202ENST00000339865 KYAT1Q16773 422 aa13.11□□□□□ -0.31
USP47-202ENST00000339865 GPR107Q5VW38 600 aa13.11□□□□□ -0.31
USP47-202ENST00000339865 OSBP2Q969R2 916 aa13.11□□□□□ -0.31
USP47-202ENST00000339865 DNAJC1Q96KC8 554 aaKnown RBP13.11□□□□□ -0.31
USP47-202ENST00000339865 TRNT1Q96Q11 434 aaKnown RBP13.11□□□□□ -0.31
USP47-202ENST00000339865 SH2D3AQ9BRG2 576 aa13.11□□□□□ -0.31
USP47-202ENST00000339865 BLMP54132 1417 aaPredicted RBP13.11□□□□□ -0.31
USP47-202ENST00000339865 FAM172BPA6NC97 362 aa13.1□□□□□ -0.31
USP47-202ENST00000339865 SLC26A3P40879 764 aa13.1□□□□□ -0.31
USP47-202ENST00000339865 AP3M2P53677 418 aa13.1□□□□□ -0.31
USP47-202ENST00000339865 BRINP3Q76B58 766 aa13.1□□□□□ -0.31
USP47-202ENST00000339865 TMPRSS6Q8IU80 811 aa13.1□□□□□ -0.31
USP47-202ENST00000339865 ABI2Q9NYB9 513 aaPredicted RBP13.1□□□□□ -0.31
USP47-202ENST00000339865 ARMCX1Q9P291 453 aa13.1□□□□□ -0.31
USP47-202ENST00000339865 ARHGAP28Q9P2N2 729 aa13.1□□□□□ -0.31
USP47-202ENST00000339865 SNAPC4Q5SXM2 1469 aa13.1□□□□□ -0.31
USP47-202ENST00000339865 PVALEFA0A1B0GWK0 134 aa13.1□□□□□ -0.31
USP47-202ENST00000339865 OR14I1A6ND48 311 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms