RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 GIPC2Q8TF65 315 aa15.98■□□□□ 0.15
LIMS1-202ENST00000338045 QKIQ96PU8 341 aaKnown RBP eCLIP15.98■□□□□ 0.15
LIMS1-202ENST00000338045 SH3GL2Q99962 352 aa15.98■□□□□ 0.15
LIMS1-202ENST00000338045 UBE2OQ9C0C9 1292 aaKnown RBP15.98■□□□□ 0.15
LIMS1-202ENST00000338045 PABPC3Q9H361 631 aaKnown RBP15.98■□□□□ 0.15
LIMS1-202ENST00000338045 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP15.98■□□□□ 0.15
LIMS1-202ENST00000338045 FNIP2Q9P278 1114 aa15.98■□□□□ 0.15
LIMS1-202ENST00000338045 SHOC2Q9UQ13 582 aa15.98■□□□□ 0.15
LIMS1-202ENST00000338045 NEU3Q9UQ49 428 aa15.98■□□□□ 0.15
LIMS1-202ENST00000338045 H0YGN5 161 aa15.97■□□□□ 0.15
LIMS1-202ENST00000338045 FGF18O76093 207 aa15.97■□□□□ 0.15
LIMS1-202ENST00000338045 LRIG2O94898 1065 aa15.97■□□□□ 0.15
LIMS1-202ENST00000338045 MAP3K6O95382 1288 aa15.97■□□□□ 0.15
LIMS1-202ENST00000338045 HTR7P34969 479 aa15.97■□□□□ 0.15
LIMS1-202ENST00000338045 CHKAP35790 457 aa15.97■□□□□ 0.15
LIMS1-202ENST00000338045 NRG1Q02297 640 aaPredicted RBP15.97■□□□□ 0.15
LIMS1-202ENST00000338045 ARTNQ5T4W7 220 aa15.97■□□□□ 0.15
LIMS1-202ENST00000338045 MANEALQ5VSG8 457 aa15.97■□□□□ 0.15
LIMS1-202ENST00000338045 SNX30Q5VWJ9 437 aa15.97■□□□□ 0.15
LIMS1-202ENST00000338045 LRIG3Q6UXM1 1119 aa15.97■□□□□ 0.15
LIMS1-202ENST00000338045 B4GALNT4Q76KP1 1039 aa15.97■□□□□ 0.15
LIMS1-202ENST00000338045 RELL1Q8IUW5 271 aa15.97■□□□□ 0.15
LIMS1-202ENST00000338045 ZCCHC9Q8N567 271 aaKnown RBP15.97■□□□□ 0.15
LIMS1-202ENST00000338045 OVCA2Q8WZ82 227 aa15.97■□□□□ 0.15
LIMS1-202ENST00000338045 HERVK_113Q902F9 699 aa15.97■□□□□ 0.15
LIMS1-202ENST00000338045 ZBP1Q9H171 429 aa15.97■□□□□ 0.15
LIMS1-202ENST00000338045 RXFP1Q9HBX9 757 aa15.97■□□□□ 0.15
LIMS1-202ENST00000338045 MRPL17Q9NRX2 175 aaKnown RBP15.97■□□□□ 0.15
LIMS1-202ENST00000338045 MAFFQ9ULX9 164 aa15.97■□□□□ 0.15
LIMS1-202ENST00000338045 RAD54BQ9Y620 910 aa15.97■□□□□ 0.15
LIMS1-202ENST00000338045 NFS1Q9Y697 457 aa15.97■□□□□ 0.15
LIMS1-202ENST00000338045 KCNN4O15554 427 aa15.97■□□□□ 0.15
LIMS1-202ENST00000338045 PAGE1O75459 146 aa15.97■□□□□ 0.15
LIMS1-202ENST00000338045 SLC2A3P11169 496 aa15.97■□□□□ 0.15
LIMS1-202ENST00000338045 HOXC13P31276 330 aa15.97■□□□□ 0.15
LIMS1-202ENST00000338045 HOOK3Q86VS8 718 aa15.97■□□□□ 0.15
LIMS1-202ENST00000338045 C7orf61Q8IZ16 206 aa15.97■□□□□ 0.15
LIMS1-202ENST00000338045 PHOSPHO2Q8TCD6 241 aa15.97■□□□□ 0.15
LIMS1-202ENST00000338045 UBLCP1Q8WVY7 318 aaPredicted RBP15.97■□□□□ 0.15
LIMS1-202ENST00000338045 CPT1BQ92523 772 aa15.97■□□□□ 0.15
LIMS1-202ENST00000338045 FCRL2Q96LA5 508 aaPredicted RBP15.97■□□□□ 0.15
LIMS1-202ENST00000338045 MYRFLQ96LU7 910 aa15.97■□□□□ 0.15
LIMS1-202ENST00000338045 PAK5Q9P286 719 aa15.97■□□□□ 0.15
LIMS1-202ENST00000338045 PLAAQ9Y263 795 aa15.97■□□□□ 0.15
LIMS1-202ENST00000338045 SNX10Q9Y5X0 201 aa15.97■□□□□ 0.15
LIMS1-202ENST00000338045 CTSAP10619 480 aa15.96■□□□□ 0.15
LIMS1-202ENST00000338045 HMGA1P17096 107 aaKnown RBP15.96■□□□□ 0.15
LIMS1-202ENST00000338045 NRLP54845 237 aa15.96■□□□□ 0.15
LIMS1-202ENST00000338045 CREMQ03060 361 aa15.96■□□□□ 0.15
LIMS1-202ENST00000338045 PDZD4Q76G19 769 aaPredicted RBP15.96■□□□□ 0.15
LIMS1-202ENST00000338045 TRMT10CQ7L0Y3 403 aaKnown RBP15.96■□□□□ 0.15
LIMS1-202ENST00000338045 HERC6Q8IVU3 1022 aa15.96■□□□□ 0.15
LIMS1-202ENST00000338045 PPIL6Q8IXY8 311 aa15.96■□□□□ 0.15
LIMS1-202ENST00000338045 NAT8LQ8N9F0 302 aa15.96■□□□□ 0.15
LIMS1-202ENST00000338045 PDZD8Q8NEN9 1154 aa15.96■□□□□ 0.15
LIMS1-202ENST00000338045 TFB1MQ8WVM0 346 aaKnown RBP15.96■□□□□ 0.15
LIMS1-202ENST00000338045 PRCCQ92733 491 aaPredicted RBP15.96■□□□□ 0.15
LIMS1-202ENST00000338045 C1orf74Q96LT6 269 aa15.96■□□□□ 0.15
LIMS1-202ENST00000338045 RAD9AQ99638 391 aa15.96■□□□□ 0.15
LIMS1-202ENST00000338045 SEMA4AQ9H3S1 761 aa15.96■□□□□ 0.15
LIMS1-202ENST00000338045 YIPF1Q9Y548 306 aa15.96■□□□□ 0.15
LIMS1-202ENST00000338045 SMAPO00193 183 aa15.95■□□□□ 0.14
LIMS1-202ENST00000338045 IGLV3-27P01718 113 aa15.95■□□□□ 0.14
LIMS1-202ENST00000338045 NUDT17P0C025 328 aa15.95■□□□□ 0.14
LIMS1-202ENST00000338045 CSH1P0DML2 217 aa15.95■□□□□ 0.14
LIMS1-202ENST00000338045 CSH2P0DML3 217 aa15.95■□□□□ 0.14
LIMS1-202ENST00000338045 EPHB2P29323 1055 aa15.95■□□□□ 0.14
LIMS1-202ENST00000338045 OAS2P29728 719 aaKnown RBP15.95■□□□□ 0.14
LIMS1-202ENST00000338045 TBX4P57082 545 aa15.95■□□□□ 0.14
LIMS1-202ENST00000338045 EFEMP1Q12805 493 aa15.95■□□□□ 0.14
LIMS1-202ENST00000338045 PDK1Q15118 436 aa15.95■□□□□ 0.14
LIMS1-202ENST00000338045 PRKD1Q15139 912 aaPredicted RBP15.95■□□□□ 0.14
LIMS1-202ENST00000338045 TRIP4Q15650 581 aaPredicted RBP15.95■□□□□ 0.14
LIMS1-202ENST00000338045 HSP90B2PQ58FF3 399 aa15.95■□□□□ 0.14
LIMS1-202ENST00000338045 C4orf22Q6V702 233 aa15.95■□□□□ 0.14
LIMS1-202ENST00000338045 CEP128Q6ZU80 1094 aa15.95■□□□□ 0.14
LIMS1-202ENST00000338045 TCEAL8Q8IYN2 117 aa15.95■□□□□ 0.14
LIMS1-202ENST00000338045 PLCD3Q8N3E9 789 aa15.95■□□□□ 0.14
LIMS1-202ENST00000338045 AUTS2Q8WXX7 1259 aa15.95■□□□□ 0.14
LIMS1-202ENST00000338045 RUFY1Q96T51 708 aa15.95■□□□□ 0.14
LIMS1-202ENST00000338045 ZBED2Q9BTP6 218 aa15.95■□□□□ 0.14
LIMS1-202ENST00000338045 CYP4F11Q9HBI6 524 aa15.95■□□□□ 0.14
LIMS1-202ENST00000338045 MARCH2Q9P0N8 246 aa15.95■□□□□ 0.14
LIMS1-202ENST00000338045 SSX2IPQ9Y2D8 614 aa15.95■□□□□ 0.14
LIMS1-202ENST00000338045 C5orf60A6NFR6 353 aa15.95■□□□□ 0.14
LIMS1-202ENST00000338045 TEX28O15482 410 aa15.95■□□□□ 0.14
LIMS1-202ENST00000338045 OPA1O60313 960 aa15.95■□□□□ 0.14
LIMS1-202ENST00000338045 TLR5O60602 858 aa15.95■□□□□ 0.14
LIMS1-202ENST00000338045 GCATO75600 419 aa15.95■□□□□ 0.14
LIMS1-202ENST00000338045 TBX18O95935 607 aa15.95■□□□□ 0.14
LIMS1-202ENST00000338045 DNAJB2P25686 324 aa15.95■□□□□ 0.14
LIMS1-202ENST00000338045 ACTN2P35609 894 aa15.95■□□□□ 0.14
LIMS1-202ENST00000338045 MLLT6P55198 1093 aaPredicted RBP15.95■□□□□ 0.14
LIMS1-202ENST00000338045 FAM193AP78312 1265 aa15.95■□□□□ 0.14
LIMS1-202ENST00000338045 CCDC25Q86WR0 208 aa15.95■□□□□ 0.14
LIMS1-202ENST00000338045 NPWQ8N729 165 aa15.95■□□□□ 0.14
LIMS1-202ENST00000338045 TRMT2BQ96GJ1 504 aaKnown RBP15.95■□□□□ 0.14
LIMS1-202ENST00000338045 PWWP2AQ96N64 755 aa15.95■□□□□ 0.14
LIMS1-202ENST00000338045 CDK5RAP1Q96SZ6 601 aaKnown RBP15.95■□□□□ 0.14
LIMS1-202ENST00000338045 PHACTR1Q9C0D0 580 aa15.95■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms