RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 THG1LQ9NWX6 298 aaKnown RBP12.91□□□□□ -0.34
SDC3-201ENST00000336798 SOHLH2Q9NX45 425 aa12.91□□□□□ -0.34
SDC3-201ENST00000336798 GALNT8Q9NY28 637 aa12.91□□□□□ -0.34
SDC3-201ENST00000336798 VTI1BQ9UEU0 232 aa12.91□□□□□ -0.34
SDC3-201ENST00000336798 CHKBQ9Y259 395 aa12.91□□□□□ -0.34
SDC3-201ENST00000336798 TMEM150BA6NC51 233 aa12.91□□□□□ -0.34
SDC3-201ENST00000336798 LRRC14BA6NHZ5 514 aa12.91□□□□□ -0.34
SDC3-201ENST00000336798 HS6ST1O60243 411 aa12.91□□□□□ -0.34
SDC3-201ENST00000336798 IFNA14P01570 189 aa12.91□□□□□ -0.34
SDC3-201ENST00000336798 MUTP22033 750 aa12.91□□□□□ -0.34
SDC3-201ENST00000336798 MGAT1P26572 445 aa12.91□□□□□ -0.34
SDC3-201ENST00000336798 SLC39A12Q504Y0 691 aa12.91□□□□□ -0.34
SDC3-201ENST00000336798 MARC1Q5VT66 337 aa12.91□□□□□ -0.34
SDC3-201ENST00000336798 ITIH5Q86UX2 942 aa12.91□□□□□ -0.34
SDC3-201ENST00000336798 ST13P5Q8NFI4 369 aaPredicted RBP12.91□□□□□ -0.34
SDC3-201ENST00000336798 VIPAS39Q9H9C1 493 aa12.91□□□□□ -0.34
SDC3-201ENST00000336798 SPG21Q9NZD8 308 aa12.91□□□□□ -0.34
SDC3-201ENST00000336798 GTF3C4Q9UKN8 822 aa12.91□□□□□ -0.34
SDC3-201ENST00000336798 NTSR2O95665 410 aa12.91□□□□□ -0.34
SDC3-201ENST00000336798 TYMPP19971 482 aa12.91□□□□□ -0.34
SDC3-201ENST00000336798 SNRPFP62306 86 aaKnown RBP12.91□□□□□ -0.34
SDC3-201ENST00000336798 ATAD3BQ5T9A4 648 aa12.91□□□□□ -0.34
SDC3-201ENST00000336798 SLC25A24Q6NUK1 477 aa12.91□□□□□ -0.34
SDC3-201ENST00000336798 AKT1S1Q96B36 256 aa12.91□□□□□ -0.34
SDC3-201ENST00000336798 NLNQ9BYT8 704 aa12.91□□□□□ -0.34
SDC3-201ENST00000336798 FOXP3Q9BZS1 431 aa12.91□□□□□ -0.34
SDC3-201ENST00000336798 MIR1-1HGQ9H1L0 117 aa12.91□□□□□ -0.34
SDC3-201ENST00000336798 KLHL28Q9NXS3 571 aa12.91□□□□□ -0.34
SDC3-201ENST00000336798 CRYL1Q9Y2S2 319 aa12.91□□□□□ -0.34
SDC3-201ENST00000336798 IQCJ-SCHIP1C9J366 451 aaPredicted RBP12.9□□□□□ -0.34
SDC3-201ENST00000336798 UBDO15205 165 aa12.9□□□□□ -0.34
SDC3-201ENST00000336798 HOXA2O43364 376 aa12.9□□□□□ -0.34
SDC3-201ENST00000336798 VAV1P15498 845 aa12.9□□□□□ -0.34
SDC3-201ENST00000336798 ERVK-24P63145 666 aa12.9□□□□□ -0.34
SDC3-201ENST00000336798 DDR2Q16832 855 aa12.9□□□□□ -0.34
SDC3-201ENST00000336798 STYK1Q6J9G0 422 aa12.9□□□□□ -0.34
SDC3-201ENST00000336798 CASP12Q6UXS9 341 aa12.9□□□□□ -0.34
SDC3-201ENST00000336798 SAPCD2Q86UD0 394 aa12.9□□□□□ -0.34
SDC3-201ENST00000336798 SCUBE3Q8IX30 993 aa12.9□□□□□ -0.34
SDC3-201ENST00000336798 MAGEB18Q96M61 343 aa12.9□□□□□ -0.34
SDC3-201ENST00000336798 CDC42EP4Q9H3Q1 356 aaKnown RBP12.9□□□□□ -0.34
SDC3-201ENST00000336798 SHOC2Q9UQ13 582 aa12.9□□□□□ -0.34
SDC3-201ENST00000336798 TBC1D12O60347 775 aa12.9□□□□□ -0.34
SDC3-201ENST00000336798 CSF1RP07333 972 aa12.9□□□□□ -0.34
SDC3-201ENST00000336798 XRCC4Q13426 336 aa12.9□□□□□ -0.34
SDC3-201ENST00000336798 ZBTB49Q6ZSB9 765 aa12.9□□□□□ -0.34
SDC3-201ENST00000336798 DEFB132Q7Z7B7 95 aa12.9□□□□□ -0.34
SDC3-201ENST00000336798 DEFB107AQ8IZN7 70 aa12.9□□□□□ -0.34
SDC3-201ENST00000336798 COMMD8Q9NX08 183 aa12.9□□□□□ -0.34
SDC3-201ENST00000336798 DRG1Q9Y295 367 aaKnown RBP12.9□□□□□ -0.34
SDC3-201ENST00000336798 LYVE1Q9Y5Y7 322 aa12.9□□□□□ -0.34
SDC3-201ENST00000336798 F9P00740 461 aa12.9□□□□□ -0.34
SDC3-201ENST00000336798 FDPSP14324 419 aaKnown RBP12.9□□□□□ -0.34
SDC3-201ENST00000336798 AMPD1P23109 780 aa12.9□□□□□ -0.34
SDC3-201ENST00000336798 NDST1P52848 882 aa12.9□□□□□ -0.34
SDC3-201ENST00000336798 BST2Q10589 180 aaKnown RBP12.9□□□□□ -0.34
SDC3-201ENST00000336798 ATP1A4Q13733 1029 aa12.9□□□□□ -0.34
SDC3-201ENST00000336798 C1DQ13901 141 aaKnown RBP12.9□□□□□ -0.34
SDC3-201ENST00000336798 GRIK4Q16099 956 aa12.9□□□□□ -0.34
SDC3-201ENST00000336798 ERMARDQ5T6L9 678 aa12.9□□□□□ -0.34
SDC3-201ENST00000336798 CYP2R1Q6VVX0 501 aa12.9□□□□□ -0.34
SDC3-201ENST00000336798 SYT15Q9BQS2 421 aa12.9□□□□□ -0.34
SDC3-201ENST00000336798 DSEQ9UL01 958 aa12.9□□□□□ -0.34
SDC3-201ENST00000336798 TMEM191CA6NGB0 347 aa12.9□□□□□ -0.34
SDC3-201ENST00000336798 PCP4L1A6NKN8 68 aa12.9□□□□□ -0.34
SDC3-201ENST00000336798 PDHXO00330 501 aa12.9□□□□□ -0.34
SDC3-201ENST00000336798 CTDNEP1O95476 244 aa12.9□□□□□ -0.34
SDC3-201ENST00000336798 SLC1A6P48664 564 aa12.9□□□□□ -0.34
SDC3-201ENST00000336798 FAM45BPQ6NSW5 357 aa12.9□□□□□ -0.34
SDC3-201ENST00000336798 DSG4Q86SJ6 1040 aa12.9□□□□□ -0.34
SDC3-201ENST00000336798 COL23A1Q86Y22 540 aaPredicted RBP12.9□□□□□ -0.34
SDC3-201ENST00000336798 UBASH3BQ8TF42 649 aa12.9□□□□□ -0.34
SDC3-201ENST00000336798 PDLIM2Q96JY6 352 aa12.9□□□□□ -0.34
SDC3-201ENST00000336798 DNAJC1Q96KC8 554 aaKnown RBP12.9□□□□□ -0.34
SDC3-201ENST00000336798 VPS45Q9NRW7 570 aa12.9□□□□□ -0.34
SDC3-201ENST00000336798 LIMD1Q9UGP4 676 aa12.9□□□□□ -0.34
SDC3-201ENST00000336798 MAGEA13PA6NCF6 341 aa12.9□□□□□ -0.35
SDC3-201ENST00000336798 INPP4BO15327 924 aa12.9□□□□□ -0.35
SDC3-201ENST00000336798 TPBGLP0DKB5 382 aa12.9□□□□□ -0.35
SDC3-201ENST00000336798 CTSEP14091 401 aa12.9□□□□□ -0.35
SDC3-201ENST00000336798 HSPA13P48723 471 aa12.9□□□□□ -0.35
SDC3-201ENST00000336798 BACE1P56817 501 aa12.9□□□□□ -0.35
SDC3-201ENST00000336798 FBXO47Q5MNV8 452 aa12.9□□□□□ -0.35
SDC3-201ENST00000336798 N4BP2L1Q5TBK1 243 aaPredicted RBP12.9□□□□□ -0.35
SDC3-201ENST00000336798 PCSK9Q8NBP7 692 aaKnown RBP12.9□□□□□ -0.35
SDC3-201ENST00000336798 C17orf50Q8WW18 174 aa12.9□□□□□ -0.35
SDC3-201ENST00000336798 APBA2Q99767 749 aa12.9□□□□□ -0.35
SDC3-201ENST00000336798 SEMA6AQ9H2E6 1030 aa12.9□□□□□ -0.35
SDC3-201ENST00000336798 RAMP2O60895 175 aa12.89□□□□□ -0.35
SDC3-201ENST00000336798 GJB6O95452 261 aa12.89□□□□□ -0.35
SDC3-201ENST00000336798 NQO1P15559 274 aaKnown RBP12.89□□□□□ -0.35
SDC3-201ENST00000336798 SLC20A2Q08357 652 aa12.89□□□□□ -0.35
SDC3-201ENST00000336798 NEDD8Q15843 81 aa12.89□□□□□ -0.35
SDC3-201ENST00000336798 PKN2Q16513 984 aaKnown RBP12.89□□□□□ -0.35
SDC3-201ENST00000336798 PPM1LQ5SGD2 360 aa12.89□□□□□ -0.35
SDC3-201ENST00000336798 KLHL17Q6TDP4 642 aa12.89□□□□□ -0.35
SDC3-201ENST00000336798 ZNF621Q6ZSS3 439 aa12.89□□□□□ -0.35
SDC3-201ENST00000336798 POLLQ9UGP5 575 aa12.89□□□□□ -0.35
SDC3-201ENST00000336798 PCDHB5Q9Y5E4 795 aa12.89□□□□□ -0.35
SDC3-201ENST00000336798 SPATA31A6Q5VVP1 1343 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms