RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 TGM2P21980 687 aa17.13■□□□□ 0.33
VPS54-201ENST00000272322 TYK2P29597 1187 aa17.13■□□□□ 0.33
VPS54-201ENST00000272322 NEK3P51956 506 aa17.13■□□□□ 0.33
VPS54-201ENST00000272322 RCN1Q15293 331 aa17.13■□□□□ 0.33
VPS54-201ENST00000272322 PKDCCQ504Y2 493 aa17.13■□□□□ 0.33
VPS54-201ENST00000272322 RWDD4Q6NW29 188 aaKnown RBP17.13■□□□□ 0.33
VPS54-201ENST00000272322 GPRIN1Q7Z2K8 1008 aa17.13■□□□□ 0.33
VPS54-201ENST00000272322 LINC01465Q8N7H1 131 aa17.13■□□□□ 0.33
VPS54-201ENST00000272322 PEX11AO75192 247 aa17.13■□□□□ 0.33
VPS54-201ENST00000272322 GPR32O75388 356 aa17.13■□□□□ 0.33
VPS54-201ENST00000272322 BAG2O95816 211 aa17.13■□□□□ 0.33
VPS54-201ENST00000272322 DARSP14868 501 aaKnown RBP17.13■□□□□ 0.33
VPS54-201ENST00000272322 TAF6P49848 677 aa17.13■□□□□ 0.33
VPS54-201ENST00000272322 PRKD1Q15139 912 aaPredicted RBP17.13■□□□□ 0.33
VPS54-201ENST00000272322 TLK2Q86UE8 772 aa17.13■□□□□ 0.33
VPS54-201ENST00000272322 PTPN18Q99952 460 aa17.13■□□□□ 0.33
VPS54-201ENST00000272322 TMEM30AQ9NV96 361 aa17.13■□□□□ 0.33
VPS54-201ENST00000272322 DDIT4Q9NX09 232 aa17.13■□□□□ 0.33
VPS54-201ENST00000272322 FLRT1Q9NZU1 646 aa17.13■□□□□ 0.33
VPS54-201ENST00000272322 ZFATQ9P243 1243 aa17.13■□□□□ 0.33
VPS54-201ENST00000272322 UBQLN1Q9UMX0 589 aaKnown RBP17.13■□□□□ 0.33
VPS54-201ENST00000272322 IPPQ9Y573 584 aa17.13■□□□□ 0.33
VPS54-201ENST00000272322 TRIP12Q14669 1992 aaPredicted RBP17.13■□□□□ 0.33
VPS54-201ENST00000272322 THOC5Q13769 683 aaKnown RBP17.12■□□□□ 0.33
VPS54-201ENST00000272322 FASTKD1Q53R41 847 aaKnown RBP17.12■□□□□ 0.33
VPS54-201ENST00000272322 ZNF669Q96BR6 464 aaPredicted RBP17.12■□□□□ 0.33
VPS54-201ENST00000272322 ALKBH8Q96BT7 664 aaKnown RBP17.12■□□□□ 0.33
VPS54-201ENST00000272322 MFSD3Q96ES6 412 aa17.12■□□□□ 0.33
VPS54-201ENST00000272322 NSL1Q96IY1 281 aa17.12■□□□□ 0.33
VPS54-201ENST00000272322 ZNF670Q9BS34 389 aa17.12■□□□□ 0.33
VPS54-201ENST00000272322 VRTNQ9H8Y1 702 aa17.12■□□□□ 0.33
VPS54-201ENST00000272322 PRR5-ARHGAP8B1AHC4 643 aa17.12■□□□□ 0.33
VPS54-201ENST00000272322 C6orf222P0C671 652 aaPredicted RBP17.12■□□□□ 0.33
VPS54-201ENST00000272322 NCF2P19878 526 aaPredicted RBP17.12■□□□□ 0.33
VPS54-201ENST00000272322 PTPN4P29074 926 aa17.12■□□□□ 0.33
VPS54-201ENST00000272322 GLRBP48167 497 aa17.12■□□□□ 0.33
VPS54-201ENST00000272322 RASSF2P50749 326 aa17.12■□□□□ 0.33
VPS54-201ENST00000272322 ARHGAP8P85298 464 aa17.12■□□□□ 0.33
VPS54-201ENST00000272322 HSP90AA5PQ58FG0 334 aa17.12■□□□□ 0.33
VPS54-201ENST00000272322 TTC1Q99614 292 aa17.12■□□□□ 0.33
VPS54-201ENST00000272322 SYT17Q9BSW7 474 aa17.12■□□□□ 0.33
VPS54-201ENST00000272322 OXCT2Q9BYC2 517 aaPredicted RBP17.12■□□□□ 0.33
VPS54-201ENST00000272322 ABHD16BQ9H3Z7 469 aa17.12■□□□□ 0.33
VPS54-201ENST00000272322 DDX43Q9NXZ2 648 aaKnown RBP17.12■□□□□ 0.33
VPS54-201ENST00000272322 POMCP01189 267 aa17.12■□□□□ 0.33
VPS54-201ENST00000272322 AVPR1AP37288 418 aa17.12■□□□□ 0.33
VPS54-201ENST00000272322 PEX19P40855 299 aa17.12■□□□□ 0.33
VPS54-201ENST00000272322 ATXN3P54252 364 aaPredicted RBP17.12■□□□□ 0.33
VPS54-201ENST00000272322 EPHB1P54762 984 aa17.12■□□□□ 0.33
VPS54-201ENST00000272322 SLC8A3P57103 927 aa17.12■□□□□ 0.33
VPS54-201ENST00000272322 CDK16Q00536 496 aa17.12■□□□□ 0.33
VPS54-201ENST00000272322 CERCAMQ5T4B2 595 aa17.12■□□□□ 0.33
VPS54-201ENST00000272322 KIAA0319Q5VV43 1072 aa17.12■□□□□ 0.33
VPS54-201ENST00000272322 ISLR2Q6UXK2 745 aa17.12■□□□□ 0.33
VPS54-201ENST00000272322 NFKBIZQ9BYH8 718 aa17.12■□□□□ 0.33
VPS54-201ENST00000272322 CYLDQ9NQC7 956 aa17.12■□□□□ 0.33
VPS54-201ENST00000272322 PNPOQ9NVS9 261 aa17.12■□□□□ 0.33
VPS54-201ENST00000272322 KIAA1257Q9ULG3 409 aa17.12■□□□□ 0.33
VPS54-201ENST00000272322 DNAJC16Q9Y2G8 782 aa17.12■□□□□ 0.33
VPS54-201ENST00000272322 BCLAF3A2AJT9 711 aaKnown RBP17.11■□□□□ 0.33
VPS54-201ENST00000272322 ARHGAP42A6NI28 874 aa17.11■□□□□ 0.33
VPS54-201ENST00000272322 EEF2KO00418 725 aaKnown RBP17.11■□□□□ 0.33
VPS54-201ENST00000272322 SORBS2O94875 1100 aaKnown RBP17.11■□□□□ 0.33
VPS54-201ENST00000272322 STX3Q13277 289 aa17.11■□□□□ 0.33
VPS54-201ENST00000272322 CTC1Q2NKJ3 1217 aa17.11■□□□□ 0.33
VPS54-201ENST00000272322 CRLF3Q8IUI8 442 aa17.11■□□□□ 0.33
VPS54-201ENST00000272322 ZNF567Q8N184 647 aa17.11■□□□□ 0.33
VPS54-201ENST00000272322 KCNN1Q92952 543 aa17.11■□□□□ 0.33
VPS54-201ENST00000272322 PPP1R12CQ9BZL4 782 aa17.11■□□□□ 0.33
VPS54-201ENST00000272322 PPME1Q9Y570 386 aa17.11■□□□□ 0.33
VPS54-201ENST00000272322 DCAF8L1A6NGE4 600 aa17.11■□□□□ 0.33
VPS54-201ENST00000272322 AP1G2O75843 785 aa17.11■□□□□ 0.33
VPS54-201ENST00000272322 PGM1P36871 562 aa17.11■□□□□ 0.33
VPS54-201ENST00000272322 PTDSS1P48651 473 aaKnown RBP17.11■□□□□ 0.33
VPS54-201ENST00000272322 GPR162Q16538 588 aa17.11■□□□□ 0.33
VPS54-201ENST00000272322 HSF5Q4G112 596 aaPredicted RBP17.11■□□□□ 0.33
VPS54-201ENST00000272322 FAM219BQ5XKK7 198 aa17.11■□□□□ 0.33
VPS54-201ENST00000272322 CFAP61Q8NHU2 1237 aa17.11■□□□□ 0.33
VPS54-201ENST00000272322 ZNF778Q96MU6 729 aa17.11■□□□□ 0.33
VPS54-201ENST00000272322 I6L893 689 aaPredicted RBP17.11■□□□□ 0.33
VPS54-201ENST00000272322 GSC2O15499 205 aa17.11■□□□□ 0.33
VPS54-201ENST00000272322 MOCS2O96007 188 aaPredicted RBP17.11■□□□□ 0.33
VPS54-201ENST00000272322 ALADP13716 330 aa17.11■□□□□ 0.33
VPS54-201ENST00000272322 ERCC2P18074 760 aa17.11■□□□□ 0.33
VPS54-201ENST00000272322 PAX7P23759 505 aa17.11■□□□□ 0.33
VPS54-201ENST00000272322 USP4Q13107 963 aa17.11■□□□□ 0.33
VPS54-201ENST00000272322 RIPK1Q13546 671 aa17.11■□□□□ 0.33
VPS54-201ENST00000272322 ITGA9Q13797 1035 aa17.11■□□□□ 0.33
VPS54-201ENST00000272322 MFSD10Q14728 455 aa17.11■□□□□ 0.33
VPS54-201ENST00000272322 STILQ15468 1287 aa17.11■□□□□ 0.33
VPS54-201ENST00000272322 DPYSL2Q16555 572 aa17.11■□□□□ 0.33
VPS54-201ENST00000272322 SH2D5Q6ZV89 423 aa17.11■□□□□ 0.33
VPS54-201ENST00000272322 SLC26A9Q7LBE3 791 aa17.11■□□□□ 0.33
VPS54-201ENST00000272322 RASSF3Q86WH2 238 aa17.11■□□□□ 0.33
VPS54-201ENST00000272322 KATNBL1Q9H079 304 aa17.11■□□□□ 0.33
VPS54-201ENST00000272322 RNPEPL1Q9HAU8 725 aa17.11■□□□□ 0.33
VPS54-201ENST00000272322 FIS1Q9Y3D6 152 aa17.11■□□□□ 0.33
VPS54-201ENST00000272322 GOLGA8QA0A0J9YX86 632 aa17.1■□□□□ 0.33
VPS54-201ENST00000272322 GOLGA8OA6NCC3 632 aa17.1■□□□□ 0.33
VPS54-201ENST00000272322 F8W810 466 aa17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms