RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 ASAP1Q9ULH1 1129 aa0.66□□□□□ -2.3
VPS35-212ENST00000640313 TMA7Q9Y2S6 64 aaKnown RBP0.66□□□□□ -2.3
VPS35-212ENST00000640313 TMX2Q9Y320 296 aa0.66□□□□□ -2.3
VPS35-212ENST00000640313 PRKAB1Q9Y478 270 aa0.66□□□□□ -2.3
VPS35-212ENST00000640313 PCDHGA9Q9Y5G4 932 aaKnown RBP0.66□□□□□ -2.3
VPS35-212ENST00000640313 PCDHGA8Q9Y5G5 932 aa0.66□□□□□ -2.3
VPS35-212ENST00000640313 PCDHGA7Q9Y5G6 932 aa0.66□□□□□ -2.3
VPS35-212ENST00000640313 PCDHGA6Q9Y5G7 932 aa0.66□□□□□ -2.3
VPS35-212ENST00000640313 PCDHGA3Q9Y5H0 932 aa0.66□□□□□ -2.3
VPS35-212ENST00000640313 AGRNO00468 2067 aa0.66□□□□□ -2.3
VPS35-212ENST00000640313 EXOC5O00471 708 aa0.65□□□□□ -2.31
VPS35-212ENST00000640313 GABRDO14764 452 aa0.65□□□□□ -2.31
VPS35-212ENST00000640313 PHGDHO43175 533 aaKnown RBP0.65□□□□□ -2.31
VPS35-212ENST00000640313 CCP110O43303 1012 aa0.65□□□□□ -2.31
VPS35-212ENST00000640313 PRAMEF2O60811 474 aa0.65□□□□□ -2.31
VPS35-212ENST00000640313 CRLF1O75462 422 aa0.65□□□□□ -2.31
VPS35-212ENST00000640313 MBPP02686 304 aaPredicted RBP0.65□□□□□ -2.31
VPS35-212ENST00000640313 AMBPP02760 352 aa0.65□□□□□ -2.31
VPS35-212ENST00000640313 SLC11A2P49281 568 aa0.65□□□□□ -2.31
VPS35-212ENST00000640313 UCP3P55916 312 aa0.65□□□□□ -2.31
VPS35-212ENST00000640313 WDR5P61964 334 aaKnown RBP0.65□□□□□ -2.31
VPS35-212ENST00000640313 TXNL4AP83876 142 aaKnown RBP0.65□□□□□ -2.31
VPS35-212ENST00000640313 TMPRSS15P98073 1019 aa0.65□□□□□ -2.31
VPS35-212ENST00000640313 GAD2Q05329 585 aa0.65□□□□□ -2.31
VPS35-212ENST00000640313 GRSF1Q12849 480 aaKnown RBP eCLIP0.65□□□□□ -2.31
VPS35-212ENST00000640313 TRAF1Q13077 416 aa0.65□□□□□ -2.31
VPS35-212ENST00000640313 KLF1Q13351 362 aaPredicted RBP0.65□□□□□ -2.31
VPS35-212ENST00000640313 MTMR1Q13613 665 aa0.65□□□□□ -2.31
VPS35-212ENST00000640313 ODF1Q14990 250 aa0.65□□□□□ -2.31
VPS35-212ENST00000640313 PGM5Q15124 567 aa0.65□□□□□ -2.31
VPS35-212ENST00000640313 ABCB5Q2M3G0 1257 aa0.65□□□□□ -2.31
VPS35-212ENST00000640313 TMEM30BQ3MIR4 351 aa0.65□□□□□ -2.31
VPS35-212ENST00000640313 PLA1AQ53H76 456 aa0.65□□□□□ -2.31
VPS35-212ENST00000640313 C9orf139Q6ZV77 190 aa0.65□□□□□ -2.31
VPS35-212ENST00000640313 MARK2Q7KZI7 788 aaKnown RBP0.65□□□□□ -2.31
VPS35-212ENST00000640313 GTSCR1Q86UQ5 136 aa0.65□□□□□ -2.31
VPS35-212ENST00000640313 SPARTQ8N0X7 666 aa0.65□□□□□ -2.31
VPS35-212ENST00000640313 CADM3Q8N126 398 aa0.65□□□□□ -2.31
VPS35-212ENST00000640313 NAGSQ8N159 534 aa0.65□□□□□ -2.31
VPS35-212ENST00000640313 CNTD1Q8N815 330 aa0.65□□□□□ -2.31
VPS35-212ENST00000640313 PRPF38AQ8NAV1 312 aaKnown RBP0.65□□□□□ -2.31
VPS35-212ENST00000640313 POC1AQ8NBT0 407 aa0.65□□□□□ -2.31
VPS35-212ENST00000640313 C1orf162Q8NEQ5 155 aaPredicted RBP0.65□□□□□ -2.31
VPS35-212ENST00000640313 GABPB2Q8TAK5 448 aaPredicted RBP0.65□□□□□ -2.31
VPS35-212ENST00000640313 FAM216AQ8WUB2 273 aa0.65□□□□□ -2.31
VPS35-212ENST00000640313 KAT2BQ92831 832 aa0.65□□□□□ -2.31
VPS35-212ENST00000640313 GPATCH3Q96I76 525 aa0.65□□□□□ -2.31
VPS35-212ENST00000640313 FIZ1Q96SL8 496 aa0.65□□□□□ -2.31
VPS35-212ENST00000640313 ASPSCR1Q9BZE9 553 aa0.65□□□□□ -2.31
VPS35-212ENST00000640313 MAP6D1Q9H9H5 199 aa0.65□□□□□ -2.31
VPS35-212ENST00000640313 USP29Q9HBJ7 922 aa0.65□□□□□ -2.31
VPS35-212ENST00000640313 SPAG4Q9NPE6 437 aa0.65□□□□□ -2.31
VPS35-212ENST00000640313 PNPOQ9NVS9 261 aa0.65□□□□□ -2.31
VPS35-212ENST00000640313 USP35Q9P2H5 1018 aa0.65□□□□□ -2.31
VPS35-212ENST00000640313 NKX1-2Q9UD57 310 aaPredicted RBP0.65□□□□□ -2.31
VPS35-212ENST00000640313 IPO11Q9UI26 975 aaKnown RBP0.65□□□□□ -2.31
VPS35-212ENST00000640313 UTS2RQ9UKP6 389 aa0.65□□□□□ -2.31
VPS35-212ENST00000640313 TRHDEQ9UKU6 1024 aa0.65□□□□□ -2.31
VPS35-212ENST00000640313 LAMP3Q9UQV4 416 aa0.65□□□□□ -2.31
VPS35-212ENST00000640313 TCF19Q9Y242 345 aa0.65□□□□□ -2.31
VPS35-212ENST00000640313 PCDHA1Q9Y5I3 950 aa0.65□□□□□ -2.31
VPS35-212ENST00000640313 HEMK1Q9Y5R4 338 aaPredicted RBP0.65□□□□□ -2.31
VPS35-212ENST00000640313 PRSS21Q9Y6M0 314 aa0.65□□□□□ -2.31
VPS35-212ENST00000640313 TRIOBPQ9H2D6 2365 aa0.65□□□□□ -2.31
VPS35-212ENST00000640313 CADPSQ9ULU8 1353 aa0.65□□□□□ -2.31
VPS35-212ENST00000640313 TNKSO95271 1327 aa0.64□□□□□ -2.31
VPS35-212ENST00000640313 A0A087WWL8 130 aa0.64□□□□□ -2.31
VPS35-212ENST00000640313 FAM172BPA6NC97 362 aa0.64□□□□□ -2.31
VPS35-212ENST00000640313 KLHL33A6NCF5 533 aa0.64□□□□□ -2.31
VPS35-212ENST00000640313 A8MU10 97 aa0.64□□□□□ -2.31
VPS35-212ENST00000640313 KRTAP4-16G5E9R7 235 aaPredicted RBP0.64□□□□□ -2.31
VPS35-212ENST00000640313 FAM72CH0Y354 149 aa0.64□□□□□ -2.31
VPS35-212ENST00000640313 MYO1CO00159 1063 aa0.64□□□□□ -2.31
VPS35-212ENST00000640313 KIF1CO43896 1103 aaKnown RBP0.64□□□□□ -2.31
VPS35-212ENST00000640313 KATNA1O75449 491 aa0.64□□□□□ -2.31
VPS35-212ENST00000640313 MT-CO1P00395 513 aa0.64□□□□□ -2.31
VPS35-212ENST00000640313 DNAH10OSP0CZ25 163 aa0.64□□□□□ -2.31
VPS35-212ENST00000640313 AMD1P17707 334 aa0.64□□□□□ -2.31
VPS35-212ENST00000640313 CDK11BP21127 795 aaKnown RBP0.64□□□□□ -2.31
VPS35-212ENST00000640313 MYF6P23409 242 aa0.64□□□□□ -2.31
VPS35-212ENST00000640313 KLRC1P26715 233 aa0.64□□□□□ -2.31
VPS35-212ENST00000640313 GALNSP34059 522 aa0.64□□□□□ -2.31
VPS35-212ENST00000640313 HOXD12P35452 270 aa0.64□□□□□ -2.31
VPS35-212ENST00000640313 MTHFSP49914 203 aa0.64□□□□□ -2.31
VPS35-212ENST00000640313 GATMP50440 423 aa0.64□□□□□ -2.31
VPS35-212ENST00000640313 ZNF84P51523 738 aa0.64□□□□□ -2.31
VPS35-212ENST00000640313 NR0B1P51843 470 aaKnown RBP0.64□□□□□ -2.31
VPS35-212ENST00000640313 EVA1CP58658 441 aa0.64□□□□□ -2.31
VPS35-212ENST00000640313 ZP1P60852 638 aa0.64□□□□□ -2.31
VPS35-212ENST00000640313 IRX6P78412 446 aaPredicted RBP0.64□□□□□ -2.31
VPS35-212ENST00000640313 KIF23Q02241 960 aaPredicted RBP0.64□□□□□ -2.31
VPS35-212ENST00000640313 CCDC15Q0P6D6 951 aa0.64□□□□□ -2.31
VPS35-212ENST00000640313 ST3GAL1Q11201 340 aa0.64□□□□□ -2.31
VPS35-212ENST00000640313 TRAF3Q13114 568 aa0.64□□□□□ -2.31
VPS35-212ENST00000640313 DNASE1L3Q13609 305 aa0.64□□□□□ -2.31
VPS35-212ENST00000640313 GPR18Q14330 331 aa0.64□□□□□ -2.31
VPS35-212ENST00000640313 PLCB4Q15147 1175 aa0.64□□□□□ -2.31
VPS35-212ENST00000640313 RBBP5Q15291 538 aaKnown RBP0.64□□□□□ -2.31
VPS35-212ENST00000640313 PCBP2Q15366 365 aaKnown RBP eCLIP0.64□□□□□ -2.31
VPS35-212ENST00000640313 CLUL1Q15846 466 aa0.64□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms