RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 SLCO1B1Q9Y6L6 691 aa20.32■□□□□ 0.84
CLN3-262ENST00000637699 APC2O95996 2303 aa20.32■□□□□ 0.84
CLN3-262ENST00000637699 PTPRBP23467 1997 aa20.32■□□□□ 0.84
CLN3-262ENST00000637699 YWHAGP61981 247 aaKnown RBP eCLIP20.31■□□□□ 0.84
CLN3-262ENST00000637699 MARCH9Q86YJ5 346 aa20.31■□□□□ 0.84
CLN3-262ENST00000637699 ARHGAP18Q8N392 663 aa20.31■□□□□ 0.84
CLN3-262ENST00000637699 CPXM2Q8N436 756 aa20.31■□□□□ 0.84
CLN3-262ENST00000637699 CCDC150Q8NCX0 1101 aa20.31■□□□□ 0.84
CLN3-262ENST00000637699 SLC2A11Q9BYW1 496 aa20.31■□□□□ 0.84
CLN3-262ENST00000637699 TOR4AQ9NXH8 423 aa20.31■□□□□ 0.84
CLN3-262ENST00000637699 IGSF10Q6WRI0 2623 aa20.31■□□□□ 0.84
CLN3-262ENST00000637699 MAPK13O15264 365 aa20.3■□□□□ 0.84
CLN3-262ENST00000637699 FLRT2O43155 660 aa20.3■□□□□ 0.84
CLN3-262ENST00000637699 TIMM44O43615 452 aa20.3■□□□□ 0.84
CLN3-262ENST00000637699 TSPAN3O60637 253 aa20.3■□□□□ 0.84
CLN3-262ENST00000637699 ZSCAN22P10073 491 aaPredicted RBP20.3■□□□□ 0.84
CLN3-262ENST00000637699 KRT13P13646 458 aa20.3■□□□□ 0.84
CLN3-262ENST00000637699 NR2F2P24468 414 aa20.3■□□□□ 0.84
CLN3-262ENST00000637699 SOWAHCQ53LP3 525 aaPredicted RBP20.3■□□□□ 0.84
CLN3-262ENST00000637699 DBX2Q6ZNG2 339 aa20.3■□□□□ 0.84
CLN3-262ENST00000637699 INTS8Q75QN2 995 aaKnown RBP20.3■□□□□ 0.84
CLN3-262ENST00000637699 TMPRSS7Q7RTY8 843 aa20.3■□□□□ 0.84
CLN3-262ENST00000637699 PIGZQ86VD9 579 aa20.3■□□□□ 0.84
CLN3-262ENST00000637699 ZNF366Q8N895 744 aa20.3■□□□□ 0.84
CLN3-262ENST00000637699 OR2T3Q8NH03 318 aa20.3■□□□□ 0.84
CLN3-262ENST00000637699 BAHD1Q8TBE0 780 aaPredicted RBP20.3■□□□□ 0.84
CLN3-262ENST00000637699 CDC6Q99741 560 aa20.3■□□□□ 0.84
CLN3-262ENST00000637699 ARID3AQ99856 593 aa20.3■□□□□ 0.84
CLN3-262ENST00000637699 C6orf106Q9H6K1 298 aaPredicted RBP20.3■□□□□ 0.84
CLN3-262ENST00000637699 WDR3Q9UNX4 943 aaKnown RBP eCLIP20.3■□□□□ 0.84
CLN3-262ENST00000637699 TRAF3IP3Q9Y228 551 aa20.3■□□□□ 0.84
CLN3-262ENST00000637699 BTBD3Q9Y2F9 522 aa20.3■□□□□ 0.84
CLN3-262ENST00000637699 PCDHGB2Q9Y5G2 931 aa20.3■□□□□ 0.84
CLN3-262ENST00000637699 CKAP5Q14008 2032 aa20.3■□□□□ 0.84
CLN3-262ENST00000637699 NUMA1Q14980 2115 aa20.3■□□□□ 0.84
CLN3-262ENST00000637699 CABIN1Q9Y6J0 2220 aa20.29■□□□□ 0.84
CLN3-262ENST00000637699 F13A1P00488 732 aa20.29■□□□□ 0.84
CLN3-262ENST00000637699 ACSL1P33121 698 aa20.29■□□□□ 0.84
CLN3-262ENST00000637699 AFF3P51826 1226 aaKnown RBP20.29■□□□□ 0.84
CLN3-262ENST00000637699 KIF19Q2TAC6 998 aa20.29■□□□□ 0.84
CLN3-262ENST00000637699 FNDC3BQ53EP0 1204 aaKnown RBP20.29■□□□□ 0.84
CLN3-262ENST00000637699 FAM186BQ8IYM0 893 aa20.29■□□□□ 0.84
CLN3-262ENST00000637699 CYB5D2Q8WUJ1 264 aa20.29■□□□□ 0.84
CLN3-262ENST00000637699 NDRG1Q92597 394 aaKnown RBP20.29■□□□□ 0.84
CLN3-262ENST00000637699 PCED1AQ9H1Q7 454 aa20.29■□□□□ 0.84
CLN3-262ENST00000637699 LHX5Q9H2C1 402 aa20.29■□□□□ 0.84
CLN3-262ENST00000637699 MAPK8IP1Q9UQF2 711 aa20.29■□□□□ 0.84
CLN3-262ENST00000637699 SNX11Q9Y5W9 270 aa20.29■□□□□ 0.84
CLN3-262ENST00000637699 GOLGA4Q13439 2230 aaKnown RBP20.29■□□□□ 0.84
CLN3-262ENST00000637699 A0A1B0GVL5 298 aa20.28■□□□□ 0.84
CLN3-262ENST00000637699 KCNK3O14649 394 aa20.28■□□□□ 0.84
CLN3-262ENST00000637699 TKTL1P51854 596 aa20.28■□□□□ 0.84
CLN3-262ENST00000637699 CAMK2GQ13555 558 aaPredicted RBP20.28■□□□□ 0.84
CLN3-262ENST00000637699 SUZ12Q15022 739 aaKnown RBP20.28■□□□□ 0.84
CLN3-262ENST00000637699 MPPE1Q53F39 396 aa20.28■□□□□ 0.84
CLN3-262ENST00000637699 RAB41Q5JT25 222 aa20.28■□□□□ 0.84
CLN3-262ENST00000637699 FAM217AQ8IXS0 508 aa20.28■□□□□ 0.84
CLN3-262ENST00000637699 SLC4A11Q8NBS3 891 aa20.28■□□□□ 0.84
CLN3-262ENST00000637699 PLD4Q96BZ4 506 aa20.28■□□□□ 0.84
CLN3-262ENST00000637699 TMEM176AQ96HP8 235 aa20.28■□□□□ 0.84
CLN3-262ENST00000637699 UBXN6Q9BZV1 441 aa20.28■□□□□ 0.84
CLN3-262ENST00000637699 CISHQ9NSE2 258 aa20.28■□□□□ 0.84
CLN3-262ENST00000637699 RCOR1Q9UKL0 485 aa20.28■□□□□ 0.84
CLN3-262ENST00000637699 CFAP45Q9UL16 551 aa20.28■□□□□ 0.84
CLN3-262ENST00000637699 PLA2G4CQ9UP65 541 aa20.28■□□□□ 0.84
CLN3-262ENST00000637699 ZBTB32Q9Y2Y4 487 aaPredicted RBP20.28■□□□□ 0.84
CLN3-262ENST00000637699 ZBED1O96006 694 aa20.27■□□□□ 0.84
CLN3-262ENST00000637699 HOXD9P28356 352 aaPredicted RBP20.27■□□□□ 0.84
CLN3-262ENST00000637699 HLA-FP30511 346 aa20.27■□□□□ 0.84
CLN3-262ENST00000637699 RAD23BP54727 409 aa20.27■□□□□ 0.84
CLN3-262ENST00000637699 DNM1Q05193 864 aaKnown RBP20.27■□□□□ 0.84
CLN3-262ENST00000637699 TEAD4Q15561 434 aa20.27■□□□□ 0.84
CLN3-262ENST00000637699 TRIP4Q15650 581 aaPredicted RBP20.27■□□□□ 0.84
CLN3-262ENST00000637699 CCDC157Q569K6 752 aa20.27■□□□□ 0.84
CLN3-262ENST00000637699 LAYNQ6UX15 382 aa20.27■□□□□ 0.84
CLN3-262ENST00000637699 FMNL3Q8IVF7 1028 aa20.27■□□□□ 0.84
CLN3-262ENST00000637699 SEMA4DQ92854 862 aa20.27■□□□□ 0.84
CLN3-262ENST00000637699 LRIG1Q96JA1 1093 aa20.27■□□□□ 0.84
CLN3-262ENST00000637699 ULBP1Q9BZM6 244 aa20.27■□□□□ 0.84
CLN3-262ENST00000637699 TMEM245Q9H330 911 aa20.27■□□□□ 0.84
CLN3-262ENST00000637699 TMEM8AQ9HCN3 771 aa20.27■□□□□ 0.84
CLN3-262ENST00000637699 TM9SF3Q9HD45 589 aa20.27■□□□□ 0.84
CLN3-262ENST00000637699 ANKRD6Q9Y2G4 727 aa20.27■□□□□ 0.84
CLN3-262ENST00000637699 URB1O60287 2271 aaKnown RBP20.27■□□□□ 0.83
CLN3-262ENST00000637699 TRABD2BA6NFA1 517 aa20.26■□□□□ 0.83
CLN3-262ENST00000637699 DKK1O94907 266 aa20.26■□□□□ 0.83
CLN3-262ENST00000637699 PFKFB1P16118 471 aa20.26■□□□□ 0.83
CLN3-262ENST00000637699 PSMC2P35998 433 aaKnown RBP20.26■□□□□ 0.83
CLN3-262ENST00000637699 HARS2P49590 506 aaKnown RBP20.26■□□□□ 0.83
CLN3-262ENST00000637699 SLC8A3P57103 927 aa20.26■□□□□ 0.83
CLN3-262ENST00000637699 KRT39Q6A163 491 aa20.26■□□□□ 0.83
CLN3-262ENST00000637699 ATL3Q6DD88 541 aa20.26■□□□□ 0.83
CLN3-262ENST00000637699 CHST9Q7L1S5 443 aa20.26■□□□□ 0.83
CLN3-262ENST00000637699 ANKRD52Q8NB46 1076 aa20.26■□□□□ 0.83
CLN3-262ENST00000637699 BIRC7Q96CA5 298 aa20.26■□□□□ 0.83
CLN3-262ENST00000637699 ABCB8Q9NUT2 735 aa20.26■□□□□ 0.83
CLN3-262ENST00000637699 SFMBT1Q9UHJ3 866 aa20.26■□□□□ 0.83
CLN3-262ENST00000637699 SMG1Q96Q15 3661 aaKnown RBP20.25■□□□□ 0.83
CLN3-262ENST00000637699 FAM149AA5PLN7 773 aa20.25■□□□□ 0.83
CLN3-262ENST00000637699 TULP2O00295 520 aa20.25■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms