RNA–Protein interactions for RNA: ENST00000634712.2

LINC00339-207, long intergenic non-protein coding RNA 339, humanhuman

TSL 5

Gene LINC00339, Length 1,388 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-207ENST00000634712 LSM8O95777 96 aaKnown RBP16.32■□□□□ 0.2
LINC00339-207ENST00000634712 TRUB2O95900 331 aaKnown RBP16.32■□□□□ 0.2
LINC00339-207ENST00000634712 IGLV3-27P01718 113 aa16.32■□□□□ 0.2
LINC00339-207ENST00000634712 ERBB2P04626 1255 aa16.32■□□□□ 0.2
LINC00339-207ENST00000634712 CISD3P0C7P0 127 aa16.32■□□□□ 0.2
LINC00339-207ENST00000634712 HOXC13P31276 330 aa16.32■□□□□ 0.2
LINC00339-207ENST00000634712 TAF5Q15542 800 aa16.32■□□□□ 0.2
LINC00339-207ENST00000634712 CRY1Q16526 586 aa16.32■□□□□ 0.2
LINC00339-207ENST00000634712 PTPN20Q4JDL3 420 aa16.32■□□□□ 0.2
LINC00339-207ENST00000634712 TAC4Q86UU9 113 aa16.32■□□□□ 0.2
LINC00339-207ENST00000634712 DEFB106AQ8N104 65 aa16.32■□□□□ 0.2
LINC00339-207ENST00000634712 SUMF1Q8NBK3 374 aa16.32■□□□□ 0.2
LINC00339-207ENST00000634712 UCMAQ8WVF2 138 aa16.32■□□□□ 0.2
LINC00339-207ENST00000634712 RUBCNQ92622 972 aa16.32■□□□□ 0.2
LINC00339-207ENST00000634712 C18orf8Q96DM3 657 aa16.32■□□□□ 0.2
LINC00339-207ENST00000634712 SLC2A11Q9BYW1 496 aa16.32■□□□□ 0.2
LINC00339-207ENST00000634712 FAM204AQ9H8W3 233 aa16.32■□□□□ 0.2
LINC00339-207ENST00000634712 STOML2Q9UJZ1 356 aa16.32■□□□□ 0.2
LINC00339-207ENST00000634712 FBXO10Q9UK96 956 aa16.32■□□□□ 0.2
LINC00339-207ENST00000634712 SMG5Q9UPR3 1016 aaKnown RBP16.32■□□□□ 0.2
LINC00339-207ENST00000634712 SLC27A6Q9Y2P4 619 aa16.32■□□□□ 0.2
LINC00339-207ENST00000634712 STARD13Q9Y3M8 1113 aa16.32■□□□□ 0.2
LINC00339-207ENST00000634712 USP34Q70CQ2 3546 aa16.31■□□□□ 0.2
LINC00339-207ENST00000634712 PTPRZ1P23471 2315 aaPredicted RBP16.31■□□□□ 0.2
LINC00339-207ENST00000634712 SYNJ2BP-COX16A0A087WUM0 186 aa16.31■□□□□ 0.2
LINC00339-207ENST00000634712 SGK1O00141 431 aa16.31■□□□□ 0.2
LINC00339-207ENST00000634712 EPHB6O15197 1021 aa16.31■□□□□ 0.2
LINC00339-207ENST00000634712 IRAK2O43187 625 aa16.31■□□□□ 0.2
LINC00339-207ENST00000634712 MOCS2O96007 188 aaPredicted RBP16.31■□□□□ 0.2
LINC00339-207ENST00000634712 MMEP08473 750 aa16.31■□□□□ 0.2
LINC00339-207ENST00000634712 CDH5P33151 784 aaPredicted RBP16.31■□□□□ 0.2
LINC00339-207ENST00000634712 JAM2P57087 298 aa16.31■□□□□ 0.2
LINC00339-207ENST00000634712 RNASE9P60153 205 aaKnown RBP16.31■□□□□ 0.2
LINC00339-207ENST00000634712 ARID5AQ03989 594 aa16.31■□□□□ 0.2
LINC00339-207ENST00000634712 E2F5Q15329 346 aa16.31■□□□□ 0.2
LINC00339-207ENST00000634712 APTXQ7Z2E3 356 aaKnown RBP16.31■□□□□ 0.2
LINC00339-207ENST00000634712 CCDC117Q8IWD4 279 aaPredicted RBP16.31■□□□□ 0.2
LINC00339-207ENST00000634712 CHPFQ8IZ52 775 aa16.31■□□□□ 0.2
LINC00339-207ENST00000634712 EPS8L1Q8TE68 723 aa16.31■□□□□ 0.2
LINC00339-207ENST00000634712 DDX1Q92499 740 aaKnown RBP16.31■□□□□ 0.2
LINC00339-207ENST00000634712 PIWIL1Q96J94 861 aaKnown RBP16.31■□□□□ 0.2
LINC00339-207ENST00000634712 FCRL2Q96LA5 508 aaPredicted RBP16.31■□□□□ 0.2
LINC00339-207ENST00000634712 FUCA2Q9BTY2 467 aa16.31■□□□□ 0.2
LINC00339-207ENST00000634712 IRX2Q9BZI1 471 aaPredicted RBP16.31■□□□□ 0.2
LINC00339-207ENST00000634712 ZDHHC4Q9NPG8 344 aa16.31■□□□□ 0.2
LINC00339-207ENST00000634712 COX16Q9P0S2 106 aa16.31■□□□□ 0.2
LINC00339-207ENST00000634712 EBF1Q9UH73 591 aa16.31■□□□□ 0.2
LINC00339-207ENST00000634712 GMEB2Q9UKD1 530 aa16.31■□□□□ 0.2
LINC00339-207ENST00000634712 RIF1Q5UIP0 2472 aaKnown RBP16.3■□□□□ 0.2
LINC00339-207ENST00000634712 GOLGA6L7A0A1B0GV03 622 aa16.3■□□□□ 0.2
LINC00339-207ENST00000634712 PRRT4C9JH25 899 aa16.3■□□□□ 0.2
LINC00339-207ENST00000634712 RPP40O75818 363 aaKnown RBP16.3■□□□□ 0.2
LINC00339-207ENST00000634712 SERPINC1P01008 464 aa16.3■□□□□ 0.2
LINC00339-207ENST00000634712 CCDC172P0C7W6 258 aa16.3■□□□□ 0.2
LINC00339-207ENST00000634712 SLC2A3P11169 496 aa16.3■□□□□ 0.2
LINC00339-207ENST00000634712 NTSR1P30989 418 aa16.3■□□□□ 0.2
LINC00339-207ENST00000634712 CDR2Q01850 454 aa16.3■□□□□ 0.2
LINC00339-207ENST00000634712 SRSF5Q13243 272 aaKnown RBP16.3■□□□□ 0.2
LINC00339-207ENST00000634712 LPAL2Q16609 132 aa16.3■□□□□ 0.2
LINC00339-207ENST00000634712 ZC3H12AQ5D1E8 599 aaKnown RBP16.3■□□□□ 0.2
LINC00339-207ENST00000634712 NAA35Q5VZE5 725 aa16.3■□□□□ 0.2
LINC00339-207ENST00000634712 ANO7Q6IWH7 933 aa16.3■□□□□ 0.2
LINC00339-207ENST00000634712 RFWD3Q6PCD5 774 aa16.3■□□□□ 0.2
LINC00339-207ENST00000634712 OLFML1Q6UWY5 402 aa16.3■□□□□ 0.2
LINC00339-207ENST00000634712 SLC26A9Q7LBE3 791 aa16.3■□□□□ 0.2
LINC00339-207ENST00000634712 ANKS1BQ7Z6G8 1248 aa16.3■□□□□ 0.2
LINC00339-207ENST00000634712 PGBD3Q8N328 593 aa16.3■□□□□ 0.2
LINC00339-207ENST00000634712 ATP6V0D2Q8N8Y2 350 aa16.3■□□□□ 0.2
LINC00339-207ENST00000634712 CPA5Q8WXQ8 436 aa16.3■□□□□ 0.2
LINC00339-207ENST00000634712 SLC39A13Q96H72 371 aa16.3■□□□□ 0.2
LINC00339-207ENST00000634712 SLC2A13Q96QE2 648 aa16.3■□□□□ 0.2
LINC00339-207ENST00000634712 RTN4Q9NQC3 1192 aaKnown RBP16.3■□□□□ 0.2
LINC00339-207ENST00000634712 SLTMQ9NWH9 1034 aaKnown RBP eCLIP16.3■□□□□ 0.22e-6■■□□□ 13.8
LINC00339-207ENST00000634712 DDIT4Q9NX09 232 aa16.3■□□□□ 0.2
LINC00339-207ENST00000634712 BCCIPQ9P287 314 aaKnown RBP eCLIP16.3■□□□□ 0.2
LINC00339-207ENST00000634712 MYO18AQ92614 2054 aaKnown RBP16.3■□□□□ 0.2
LINC00339-207ENST00000634712 KIAA1549LQ6ZVL6 1849 aa16.29■□□□□ 0.2
LINC00339-207ENST00000634712 FAM170AA1A519 330 aa16.29■□□□□ 0.2
LINC00339-207ENST00000634712 GOLGA6L19H0YKK7 550 aa16.29■□□□□ 0.2
LINC00339-207ENST00000634712 TEX33O43247 280 aa16.29■□□□□ 0.2
LINC00339-207ENST00000634712 TBL1XO60907 577 aa16.29■□□□□ 0.2
LINC00339-207ENST00000634712 CAVIN2O95810 425 aa16.29■□□□□ 0.2
LINC00339-207ENST00000634712 ABCB4P21439 1286 aa16.29■□□□□ 0.2
LINC00339-207ENST00000634712 NOS2P35228 1153 aa16.29■□□□□ 0.2
LINC00339-207ENST00000634712 WASP42768 502 aa16.29■□□□□ 0.2
LINC00339-207ENST00000634712 GABRB2P47870 512 aa16.29■□□□□ 0.2
LINC00339-207ENST00000634712 IQCB1Q15051 598 aa16.29■□□□□ 0.2
LINC00339-207ENST00000634712 USP39Q53GS9 565 aaKnown RBP16.29■□□□□ 0.2
LINC00339-207ENST00000634712 PIK3R6Q5UE93 754 aa16.29■□□□□ 0.2
LINC00339-207ENST00000634712 EGFLAMQ63HQ2 1017 aa16.29■□□□□ 0.2
LINC00339-207ENST00000634712 TMEM92Q6UXU6 159 aa16.29■□□□□ 0.2
LINC00339-207ENST00000634712 TRIM72Q6ZMU5 477 aa16.29■□□□□ 0.2
LINC00339-207ENST00000634712 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.29■□□□□ 0.2
LINC00339-207ENST00000634712 ZNF557Q8N988 423 aaPredicted RBP16.29■□□□□ 0.2
LINC00339-207ENST00000634712 ZNF397Q8NF99 534 aaPredicted RBP16.29■□□□□ 0.2
LINC00339-207ENST00000634712 SLC20A1Q8WUM9 679 aa16.29■□□□□ 0.2
LINC00339-207ENST00000634712 GAB3Q8WWW8 586 aa16.29■□□□□ 0.2
LINC00339-207ENST00000634712 BTN2A3PQ96KV6 586 aa16.29■□□□□ 0.2
LINC00339-207ENST00000634712 RRN3Q9NYV6 651 aa16.29■□□□□ 0.2
LINC00339-207ENST00000634712 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms