RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 CCDC40Q4G0X9 1142 aa19.82■□□□□ 0.76
CDX1-202ENST00000616154 PM20D1Q6GTS8 502 aa19.82■□□□□ 0.76
CDX1-202ENST00000616154 RSRC2Q7L4I2 434 aaKnown RBP19.82■□□□□ 0.76
CDX1-202ENST00000616154 ANKS1BQ7Z6G8 1248 aa19.82■□□□□ 0.76
CDX1-202ENST00000616154 FAM217AQ8IXS0 508 aa19.82■□□□□ 0.76
CDX1-202ENST00000616154 MINDY1Q8N5J2 469 aa19.82■□□□□ 0.76
CDX1-202ENST00000616154 UCMAQ8WVF2 138 aa19.82■□□□□ 0.76
CDX1-202ENST00000616154 FOXJ1Q92949 421 aa19.82■□□□□ 0.76
CDX1-202ENST00000616154 PIWIL1Q96J94 861 aaKnown RBP19.82■□□□□ 0.76
CDX1-202ENST00000616154 SCNM1Q9BWG6 230 aa19.82■□□□□ 0.76
CDX1-202ENST00000616154 SUSD2Q9UGT4 822 aa19.82■□□□□ 0.76
CDX1-202ENST00000616154 RWDD2AQ9UIY3 292 aa19.82■□□□□ 0.76
CDX1-202ENST00000616154 FAM208BQ5VWN6 2430 aa19.82■□□□□ 0.76
CDX1-202ENST00000616154 SLC12A8A0AV02 714 aa19.81■□□□□ 0.76
CDX1-202ENST00000616154 ZBED1O96006 694 aa19.81■□□□□ 0.76
CDX1-202ENST00000616154 CYBBP04839 570 aa19.81■□□□□ 0.76
CDX1-202ENST00000616154 SYPP08247 313 aa19.81■□□□□ 0.76
CDX1-202ENST00000616154 CD6P30203 668 aa19.81■□□□□ 0.76
CDX1-202ENST00000616154 IL12RB1P42701 662 aa19.81■□□□□ 0.76
CDX1-202ENST00000616154 TKTL1P51854 596 aa19.81■□□□□ 0.76
CDX1-202ENST00000616154 YWHAEP62258 255 aaKnown RBP19.81■□□□□ 0.76
CDX1-202ENST00000616154 EIF4HQ15056 248 aaKnown RBP19.81■□□□□ 0.76
CDX1-202ENST00000616154 E2F5Q15329 346 aa19.81■□□□□ 0.76
CDX1-202ENST00000616154 SYCP2LQ5T4T6 812 aa19.81■□□□□ 0.76
CDX1-202ENST00000616154 DENND1CQ8IV53 801 aa19.81■□□□□ 0.76
CDX1-202ENST00000616154 KDF1Q8NAX2 398 aaPredicted RBP19.81■□□□□ 0.76
CDX1-202ENST00000616154 PLD4Q96BZ4 506 aa19.81■□□□□ 0.76
CDX1-202ENST00000616154 MED15Q96RN5 788 aa19.81■□□□□ 0.76
CDX1-202ENST00000616154 SLC2A11Q9BYW1 496 aa19.81■□□□□ 0.76
CDX1-202ENST00000616154 PRDM16Q9HAZ2 1276 aa19.81■□□□□ 0.76
CDX1-202ENST00000616154 DNAAF2Q9NVR5 837 aaKnown RBP19.81■□□□□ 0.76
CDX1-202ENST00000616154 USP36Q9P275 1121 aaKnown RBP19.81■□□□□ 0.76
CDX1-202ENST00000616154 SPAARA0A1B0GVQ0 90 aa19.8■□□□□ 0.76
CDX1-202ENST00000616154 XPO1O14980 1071 aaKnown RBP19.8■□□□□ 0.76
CDX1-202ENST00000616154 BCAT1P54687 386 aa19.8■□□□□ 0.76
CDX1-202ENST00000616154 STX17P56962 302 aa19.8■□□□□ 0.76
CDX1-202ENST00000616154 GOLGA7BQ2TAP0 167 aa19.8■□□□□ 0.76
CDX1-202ENST00000616154 WDR45BQ5MNZ6 344 aa19.8■□□□□ 0.76
CDX1-202ENST00000616154 BHLHA9Q7RTU4 235 aa19.8■□□□□ 0.76
CDX1-202ENST00000616154 RGL4Q8IZJ4 473 aa19.8■□□□□ 0.76
CDX1-202ENST00000616154 MLKLQ8NB16 471 aa19.8■□□□□ 0.76
CDX1-202ENST00000616154 RBBP8NLQ8NC74 664 aaPredicted RBP19.8■□□□□ 0.76
CDX1-202ENST00000616154 GATA6Q92908 595 aa19.8■□□□□ 0.76
CDX1-202ENST00000616154 ULBP1Q9BZM6 244 aa19.8■□□□□ 0.76
CDX1-202ENST00000616154 MKRN2Q9H000 416 aaKnown RBP19.8■□□□□ 0.76
CDX1-202ENST00000616154 ITM2CQ9NQX7 267 aa19.8■□□□□ 0.76
CDX1-202ENST00000616154 TSPAN16Q9UKR8 245 aa19.8■□□□□ 0.76
CDX1-202ENST00000616154 ZZEF1O43149 2961 aa19.8■□□□□ 0.76
CDX1-202ENST00000616154 TMEM8BA6NDV4 472 aa19.79■□□□□ 0.76
CDX1-202ENST00000616154 TULP2O00295 520 aa19.79■□□□□ 0.76
CDX1-202ENST00000616154 FGFR1OPO95684 399 aaKnown RBP19.79■□□□□ 0.76
CDX1-202ENST00000616154 GNSP15586 552 aa19.79■□□□□ 0.76
CDX1-202ENST00000616154 SIM1P81133 766 aaPredicted RBP19.79■□□□□ 0.76
CDX1-202ENST00000616154 GCNT1Q02742 428 aa19.79■□□□□ 0.76
CDX1-202ENST00000616154 PDE4CQ08493 712 aa19.79■□□□□ 0.76
CDX1-202ENST00000616154 CETN1Q12798 172 aa19.79■□□□□ 0.76
CDX1-202ENST00000616154 TRIP4Q15650 581 aaPredicted RBP19.79■□□□□ 0.76
CDX1-202ENST00000616154 OR2I1PQ8NGU4 316 aa19.79■□□□□ 0.76
CDX1-202ENST00000616154 DDI1Q8WTU0 396 aa19.79■□□□□ 0.76
CDX1-202ENST00000616154 TOE1Q96GM8 510 aaKnown RBP19.79■□□□□ 0.76
CDX1-202ENST00000616154 NT5C1BQ96P26 610 aa19.79■□□□□ 0.76
CDX1-202ENST00000616154 SRRTQ9BXP5 876 aaKnown RBP19.79■□□□□ 0.76
CDX1-202ENST00000616154 OLA1Q9NTK5 396 aaKnown RBP19.79■□□□□ 0.76
CDX1-202ENST00000616154 ELOVL2Q9NXB9 296 aa19.79■□□□□ 0.76
CDX1-202ENST00000616154 WSB2Q9NYS7 404 aaPredicted RBP19.79■□□□□ 0.76
CDX1-202ENST00000616154 KIAA1257Q9ULG3 409 aa19.79■□□□□ 0.76
CDX1-202ENST00000616154 ZMIZ1Q9ULJ6 1067 aa19.79■□□□□ 0.76
CDX1-202ENST00000616154 CLEC4EQ9ULY5 219 aa19.79■□□□□ 0.76
CDX1-202ENST00000616154 NFE2L3Q9Y4A8 694 aa19.79■□□□□ 0.76
CDX1-202ENST00000616154 NEUROG3Q9Y4Z2 214 aa19.79■□□□□ 0.76
CDX1-202ENST00000616154 MUC22E2RYF6 1773 aaPredicted RBP19.79■□□□□ 0.76
CDX1-202ENST00000616154 LETM1O95202 739 aaPredicted RBP19.78■□□□□ 0.76
CDX1-202ENST00000616154 CD59P13987 128 aa19.78■□□□□ 0.76
CDX1-202ENST00000616154 BST2Q10589 180 aaKnown RBP19.78■□□□□ 0.76
CDX1-202ENST00000616154 KCNH2Q12809 1159 aa19.78■□□□□ 0.76
CDX1-202ENST00000616154 HNRNPDQ14103 355 aaKnown RBP19.78■□□□□ 0.76
CDX1-202ENST00000616154 ZNF234Q14588 700 aa19.78■□□□□ 0.76
CDX1-202ENST00000616154 PLEKHG6Q3KR16 790 aa19.78■□□□□ 0.76
CDX1-202ENST00000616154 SGO2Q562F6 1265 aa19.78■□□□□ 0.76
CDX1-202ENST00000616154 DNASE2BQ8WZ79 361 aa19.78■□□□□ 0.76
CDX1-202ENST00000616154 NDRG1Q92597 394 aaKnown RBP19.78■□□□□ 0.76
CDX1-202ENST00000616154 LRRC4Q9HBW1 653 aa19.78■□□□□ 0.76
CDX1-202ENST00000616154 HESX1Q9UBX0 185 aa19.78■□□□□ 0.76
CDX1-202ENST00000616154 HBS1LQ9Y450 684 aaKnown RBP19.78■□□□□ 0.76
CDX1-202ENST00000616154 WDFY3Q8IZQ1 3526 aa19.78■□□□□ 0.76
CDX1-202ENST00000616154 TIMM44O43615 452 aa19.77■□□□□ 0.76
CDX1-202ENST00000616154 HYAL3O43820 417 aaPredicted RBP19.77■□□□□ 0.76
CDX1-202ENST00000616154 SYNCRIPO60506 623 aaKnown RBP19.77■□□□□ 0.76
CDX1-202ENST00000616154 GJB3O75712 270 aa19.77■□□□□ 0.76
CDX1-202ENST00000616154 IGLV3-19P01714 112 aa19.77■□□□□ 0.76
CDX1-202ENST00000616154 AFPP02771 609 aaKnown RBP19.77■□□□□ 0.76
CDX1-202ENST00000616154 PAEPP09466 180 aa19.77■□□□□ 0.76
CDX1-202ENST00000616154 OXTRP30559 389 aa19.77■□□□□ 0.76
CDX1-202ENST00000616154 ADIGQ0VDE8 80 aa19.77■□□□□ 0.76
CDX1-202ENST00000616154 SLC14A1Q13336 389 aa19.77■□□□□ 0.76
CDX1-202ENST00000616154 ZSCAN23Q3MJ62 389 aa19.77■□□□□ 0.76
CDX1-202ENST00000616154 TMPRSS6Q8IU80 811 aa19.77■□□□□ 0.76
CDX1-202ENST00000616154 FMNL3Q8IVF7 1028 aa19.77■□□□□ 0.76
CDX1-202ENST00000616154 CADM4Q8NFZ8 388 aa19.77■□□□□ 0.76
CDX1-202ENST00000616154 SIPA1Q96FS4 1042 aa19.77■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms