RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 FOSP01100 380 aaPredicted RBP10.53□□□□□ -0.72
VPS39-214ENST00000614932 H2AFZP0C0S5 128 aa10.53□□□□□ -0.72
VPS39-214ENST00000614932 ATICP31939 592 aa10.53□□□□□ -0.72
VPS39-214ENST00000614932 ARL1P40616 181 aaPredicted RBP10.53□□□□□ -0.72
VPS39-214ENST00000614932 HSPA13P48723 471 aa10.53□□□□□ -0.72
VPS39-214ENST00000614932 ESRRGP62508 458 aa10.53□□□□□ -0.72
VPS39-214ENST00000614932 KCNH2Q12809 1159 aa10.53□□□□□ -0.72
VPS39-214ENST00000614932 TRIP13Q15645 432 aaPredicted RBP10.53□□□□□ -0.72
VPS39-214ENST00000614932 NPTX1Q15818 432 aa10.53□□□□□ -0.72
VPS39-214ENST00000614932 DGKDQ16760 1214 aa10.53□□□□□ -0.72
VPS39-214ENST00000614932 PRR23CQ6ZRP0 262 aa10.53□□□□□ -0.72
VPS39-214ENST00000614932 H2AFVQ71UI9 128 aa10.53□□□□□ -0.72
VPS39-214ENST00000614932 OTOP1Q7RTM1 612 aa10.53□□□□□ -0.72
VPS39-214ENST00000614932 PLPP6Q8IY26 295 aa10.53□□□□□ -0.72
VPS39-214ENST00000614932 PRELID2Q8N945 189 aa10.53□□□□□ -0.72
VPS39-214ENST00000614932 CCDC89Q8N998 374 aa10.53□□□□□ -0.72
VPS39-214ENST00000614932 GLMNQ92990 594 aa10.53□□□□□ -0.72
VPS39-214ENST00000614932 FAM20AQ96MK3 541 aa10.53□□□□□ -0.72
VPS39-214ENST00000614932 C7orf26Q96N11 449 aa10.53□□□□□ -0.72
VPS39-214ENST00000614932 NAP1L4Q99733 375 aaKnown RBP10.53□□□□□ -0.72
VPS39-214ENST00000614932 NMUR2Q9GZQ4 415 aa10.53□□□□□ -0.72
VPS39-214ENST00000614932 CORINQ9Y5Q5 1042 aa10.53□□□□□ -0.72
VPS39-214ENST00000614932 FAM172BPA6NC97 362 aa10.53□□□□□ -0.72
VPS39-214ENST00000614932 NPM3O75607 178 aaKnown RBP10.53□□□□□ -0.72
VPS39-214ENST00000614932 EIF2AK2P19525 551 aaKnown RBP10.53□□□□□ -0.72
VPS39-214ENST00000614932 BMPR1AP36894 532 aa10.53□□□□□ -0.72
VPS39-214ENST00000614932 PHC1P78364 1004 aa10.53□□□□□ -0.72
VPS39-214ENST00000614932 KDSRQ06136 332 aa10.53□□□□□ -0.72
VPS39-214ENST00000614932 ZNF211Q13398 564 aaPredicted RBP10.53□□□□□ -0.72
VPS39-214ENST00000614932 PPP4R4Q6NUP7 873 aa10.53□□□□□ -0.72
VPS39-214ENST00000614932 RINT1Q6NUQ1 792 aa10.53□□□□□ -0.72
VPS39-214ENST00000614932 DLK2Q6UY11 383 aa10.53□□□□□ -0.72
VPS39-214ENST00000614932 BBOF1Q8ND07 529 aa10.53□□□□□ -0.72
VPS39-214ENST00000614932 CATSPER1Q8NEC5 780 aa10.53□□□□□ -0.72
VPS39-214ENST00000614932 CHURC1Q8WUH1 139 aa10.53□□□□□ -0.72
VPS39-214ENST00000614932 JDP2Q8WYK2 163 aa10.53□□□□□ -0.72
VPS39-214ENST00000614932 RSPH9Q9H1X1 276 aaPredicted RBP10.53□□□□□ -0.72
VPS39-214ENST00000614932 NINJ2Q9NZG7 142 aa10.53□□□□□ -0.72
VPS39-214ENST00000614932 SENP1Q9P0U3 644 aa10.53□□□□□ -0.72
VPS39-214ENST00000614932 GNEQ9Y223 722 aaKnown RBP10.53□□□□□ -0.72
VPS39-214ENST00000614932 HOXC11O43248 304 aaPredicted RBP10.53□□□□□ -0.72
VPS39-214ENST00000614932 CCNT2O60583 730 aaKnown RBP10.53□□□□□ -0.72
VPS39-214ENST00000614932 AKAP3O75969 853 aa10.53□□□□□ -0.72
VPS39-214ENST00000614932 TGDSO95455 350 aa10.53□□□□□ -0.72
VPS39-214ENST00000614932 MYCLP12524 364 aaPredicted RBP10.53□□□□□ -0.72
VPS39-214ENST00000614932 CTNNA2P26232 953 aa10.53□□□□□ -0.72
VPS39-214ENST00000614932 ARL4CP56559 192 aa10.53□□□□□ -0.72
VPS39-214ENST00000614932 SP4Q02446 784 aa10.53□□□□□ -0.72
VPS39-214ENST00000614932 C19orf57Q0VDD7 668 aa10.53□□□□□ -0.72
VPS39-214ENST00000614932 PDK1Q15118 436 aa10.53□□□□□ -0.72
VPS39-214ENST00000614932 ZBED5Q49AG3 693 aa10.53□□□□□ -0.72
VPS39-214ENST00000614932 PPM1LQ5SGD2 360 aa10.53□□□□□ -0.72
VPS39-214ENST00000614932 CIAPIN1Q6FI81 312 aa10.53□□□□□ -0.72
VPS39-214ENST00000614932 ZNF571Q7Z3V5 609 aaPredicted RBP10.53□□□□□ -0.72
VPS39-214ENST00000614932 CCDC105Q8IYK2 499 aa10.53□□□□□ -0.72
VPS39-214ENST00000614932 KCTD17Q8N5Z5 321 aa10.53□□□□□ -0.72
VPS39-214ENST00000614932 TTC13Q8NBP0 860 aa10.53□□□□□ -0.72
VPS39-214ENST00000614932 ALPK1Q96QP1 1244 aa10.53□□□□□ -0.72
VPS39-214ENST00000614932 RIC8BQ9NVN3 520 aa10.53□□□□□ -0.72
VPS39-214ENST00000614932 ABI2Q9NYB9 513 aaPredicted RBP10.53□□□□□ -0.72
VPS39-214ENST00000614932 WHRNQ9P202 907 aa10.53□□□□□ -0.72
VPS39-214ENST00000614932 CFL2Q9Y281 166 aa10.53□□□□□ -0.72
VPS39-214ENST00000614932 ARPC4-TTLL3A0A0A6YYG9 625 aa10.52□□□□□ -0.73
VPS39-214ENST00000614932 A0A1B0GTW7 788 aa10.52□□□□□ -0.73
VPS39-214ENST00000614932 TISP43B9A030 160 aa10.52□□□□□ -0.73
VPS39-214ENST00000614932 FAM13AO94988 1023 aa10.52□□□□□ -0.73
VPS39-214ENST00000614932 ATE1O95260 518 aa10.52□□□□□ -0.73
VPS39-214ENST00000614932 CYP2J2P51589 502 aa10.52□□□□□ -0.73
VPS39-214ENST00000614932 KNOP1Q1ED39 458 aaKnown RBP10.52□□□□□ -0.73
VPS39-214ENST00000614932 CEP55Q53EZ4 464 aa10.52□□□□□ -0.73
VPS39-214ENST00000614932 C6orf52Q5T4I8 152 aa10.52□□□□□ -0.73
VPS39-214ENST00000614932 CCBE1Q6UXH8 406 aaPredicted RBP10.52□□□□□ -0.73
VPS39-214ENST00000614932 AGMOQ6ZNB7 445 aa10.52□□□□□ -0.73
VPS39-214ENST00000614932 IGFN1Q86VF2 1251 aa10.52□□□□□ -0.73
VPS39-214ENST00000614932 CPNE9Q8IYJ1 553 aa10.52□□□□□ -0.73
VPS39-214ENST00000614932 SLC2A11Q9BYW1 496 aa10.52□□□□□ -0.73
VPS39-214ENST00000614932 DCLK3Q9C098 648 aa10.52□□□□□ -0.73
VPS39-214ENST00000614932 SEPT3Q9UH03 358 aa10.52□□□□□ -0.73
VPS39-214ENST00000614932 GIMAP1-GIMAP5A0A087WTJ2 511 aa10.52□□□□□ -0.73
VPS39-214ENST00000614932 FADS2P1A8MWK0 482 aa10.52□□□□□ -0.73
VPS39-214ENST00000614932 TAF4O00268 1085 aa10.52□□□□□ -0.73
VPS39-214ENST00000614932 TNPO2O14787 897 aaKnown RBP10.52□□□□□ -0.73
VPS39-214ENST00000614932 GIPC1O14908 333 aa10.52□□□□□ -0.73
VPS39-214ENST00000614932 SH3BP5O60239 455 aa10.52□□□□□ -0.73
VPS39-214ENST00000614932 ARHGEF15O94989 841 aa10.52□□□□□ -0.73
VPS39-214ENST00000614932 KRT5P13647 590 aa10.52□□□□□ -0.73
VPS39-214ENST00000614932 ITGB5P18084 799 aa10.52□□□□□ -0.73
VPS39-214ENST00000614932 BAG6P46379 1132 aa10.52□□□□□ -0.73
VPS39-214ENST00000614932 NDST2P52849 883 aa10.52□□□□□ -0.73
VPS39-214ENST00000614932 GJA9P57773 515 aa10.52□□□□□ -0.73
VPS39-214ENST00000614932 MTMR2Q13614 643 aa10.52□□□□□ -0.73
VPS39-214ENST00000614932 RARS2Q5T160 578 aaKnown RBP10.52□□□□□ -0.73
VPS39-214ENST00000614932 NDUFAF5Q5TEU4 345 aa10.52□□□□□ -0.73
VPS39-214ENST00000614932 NSMFQ6X4W1 530 aa10.52□□□□□ -0.73
VPS39-214ENST00000614932 CENPUQ71F23 418 aa10.52□□□□□ -0.73
VPS39-214ENST00000614932 TRIM59Q8IWR1 403 aa10.52□□□□□ -0.73
VPS39-214ENST00000614932 CLIP4Q8N3C7 705 aa10.52□□□□□ -0.73
VPS39-214ENST00000614932 SGCDQ92629 289 aa10.52□□□□□ -0.73
VPS39-214ENST00000614932 GIMAP5Q96F15 307 aa10.52□□□□□ -0.73
VPS39-214ENST00000614932 TSSK1BQ9BXA7 367 aa10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms