RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 GOLGA8HP0CJ92 632 aa6.59□□□□□ -1.35
VPS53-212ENST00000572259 RAP1GAPP47736 663 aa6.59□□□□□ -1.35
VPS53-212ENST00000572259 PTPN14Q15678 1187 aa6.59□□□□□ -1.35
VPS53-212ENST00000572259 WDR72Q3MJ13 1102 aa6.59□□□□□ -1.35
VPS53-212ENST00000572259 KIAA1841Q6NSI8 718 aa6.59□□□□□ -1.35
VPS53-212ENST00000572259 TRMT10BQ6PF06 316 aaKnown RBP6.59□□□□□ -1.35
VPS53-212ENST00000572259 CHST3Q7LGC8 479 aa6.59□□□□□ -1.35
VPS53-212ENST00000572259 KDELC2Q7Z4H8 507 aa6.59□□□□□ -1.35
VPS53-212ENST00000572259 CXorf67Q86X51 503 aaPredicted RBP6.59□□□□□ -1.35
VPS53-212ENST00000572259 MB21D2Q8IYB1 491 aaPredicted RBP6.59□□□□□ -1.35
VPS53-212ENST00000572259 ADGRF4Q8IZF3 695 aa6.59□□□□□ -1.35
VPS53-212ENST00000572259 ATG16L2Q8NAA4 619 aa6.59□□□□□ -1.35
VPS53-212ENST00000572259 BHLHE22Q8NFJ8 381 aaPredicted RBP6.59□□□□□ -1.35
VPS53-212ENST00000572259 ADAMTS15Q8TE58 950 aa6.59□□□□□ -1.35
VPS53-212ENST00000572259 FNIP1Q8TF40 1166 aa6.59□□□□□ -1.35
VPS53-212ENST00000572259 RFFLQ8WZ73 363 aa6.59□□□□□ -1.35
VPS53-212ENST00000572259 PYM1Q9BRP8 204 aaKnown RBP6.59□□□□□ -1.35
VPS53-212ENST00000572259 UNKQ9C0B0 810 aaKnown RBP6.59□□□□□ -1.35
VPS53-212ENST00000572259 SEMA4AQ9H3S1 761 aa6.59□□□□□ -1.35
VPS53-212ENST00000572259 ABHD16BQ9H3Z7 469 aa6.59□□□□□ -1.35
VPS53-212ENST00000572259 VAT1LQ9HCJ6 419 aa6.59□□□□□ -1.35
VPS53-212ENST00000572259 CEP72Q9P209 647 aa6.59□□□□□ -1.35
VPS53-212ENST00000572259 LRFN1Q9P244 771 aa6.59□□□□□ -1.35
VPS53-212ENST00000572259 MTRRQ9UBK8 725 aa6.59□□□□□ -1.35
VPS53-212ENST00000572259 TUBD1Q9UJT1 453 aa6.59□□□□□ -1.35
VPS53-212ENST00000572259 RIPK3Q9Y572 518 aa6.59□□□□□ -1.35
VPS53-212ENST00000572259 NR2E3Q9Y5X4 410 aa6.59□□□□□ -1.35
VPS53-212ENST00000572259 ZNF536O15090 1300 aa6.58□□□□□ -1.36
VPS53-212ENST00000572259 BRCA2P51587 3418 aa6.58□□□□□ -1.36
VPS53-212ENST00000572259 CCDC196A0A1B0GTZ2 297 aa6.58□□□□□ -1.36
VPS53-212ENST00000572259 KBTBD13C9JR72 458 aa6.58□□□□□ -1.36
VPS53-212ENST00000572259 DAPK3O43293 454 aa6.58□□□□□ -1.36
VPS53-212ENST00000572259 USO1O60763 962 aaKnown RBP6.58□□□□□ -1.36
VPS53-212ENST00000572259 RARBP10826 455 aa6.58□□□□□ -1.36
VPS53-212ENST00000572259 AKR1A1P14550 325 aa6.58□□□□□ -1.36
VPS53-212ENST00000572259 CCND3P30281 292 aaPredicted RBP6.58□□□□□ -1.36
VPS53-212ENST00000572259 THBS2P35442 1172 aa6.58□□□□□ -1.36
VPS53-212ENST00000572259 ATP6V1E1P36543 226 aa6.58□□□□□ -1.36
VPS53-212ENST00000572259 TUBP50607 506 aa6.58□□□□□ -1.36
VPS53-212ENST00000572259 ZNF132P52740 706 aa6.58□□□□□ -1.36
VPS53-212ENST00000572259 SLC16A1P53985 500 aa6.58□□□□□ -1.36
VPS53-212ENST00000572259 BCAR1P56945 870 aa6.58□□□□□ -1.36
VPS53-212ENST00000572259 SNAP25P60880 206 aa6.58□□□□□ -1.36
VPS53-212ENST00000572259 IL13RA1P78552 427 aa6.58□□□□□ -1.36
VPS53-212ENST00000572259 SRSF2Q01130 221 aaKnown RBP6.58□□□□□ -1.36
VPS53-212ENST00000572259 TRPC3Q13507 836 aa6.58□□□□□ -1.36
VPS53-212ENST00000572259 GRM4Q14833 912 aa6.58□□□□□ -1.36
VPS53-212ENST00000572259 MYBPC3Q14896 1274 aa6.58□□□□□ -1.36
VPS53-212ENST00000572259 NOLC1Q14978 699 aaKnown RBP eCLIP6.58□□□□□ -1.36
VPS53-212ENST00000572259 PDCD1Q15116 288 aa6.58□□□□□ -1.36
VPS53-212ENST00000572259 PPP2R5BQ15173 497 aa6.58□□□□□ -1.36
VPS53-212ENST00000572259 PFKFB4Q16877 469 aa6.58□□□□□ -1.36
VPS53-212ENST00000572259 UGT8Q16880 541 aa6.58□□□□□ -1.36
VPS53-212ENST00000572259 USH1GQ495M9 461 aa6.58□□□□□ -1.36
VPS53-212ENST00000572259 CT83Q5H943 113 aa6.58□□□□□ -1.36
VPS53-212ENST00000572259 UBXN11Q5T124 520 aa6.58□□□□□ -1.36
VPS53-212ENST00000572259 CCDC62Q6P9F0 684 aa6.58□□□□□ -1.36
VPS53-212ENST00000572259 BLOC1S2Q6QNY1 142 aa6.58□□□□□ -1.36
VPS53-212ENST00000572259 MAMDC4Q6UXC1 1216 aa6.58□□□□□ -1.36
VPS53-212ENST00000572259 RNF207Q6ZRF8 634 aa6.58□□□□□ -1.36
VPS53-212ENST00000572259 CXXC5Q7LFL8 322 aaKnown RBP6.58□□□□□ -1.36
VPS53-212ENST00000572259 CENPTQ96BT3 561 aa6.58□□□□□ -1.36
VPS53-212ENST00000572259 CGRRF1Q99675 332 aa6.58□□□□□ -1.36
VPS53-212ENST00000572259 NCAPGQ9BPX3 1015 aa6.58□□□□□ -1.36
VPS53-212ENST00000572259 CNPPD1Q9BV87 410 aa6.58□□□□□ -1.36
VPS53-212ENST00000572259 SORBS1Q9BX66 1292 aaKnown RBP6.58□□□□□ -1.36
VPS53-212ENST00000572259 STK33Q9BYT3 514 aa6.58□□□□□ -1.36
VPS53-212ENST00000572259 L2HGDHQ9H9P8 463 aa6.58□□□□□ -1.36
VPS53-212ENST00000572259 CYP4F11Q9HBI6 524 aa6.58□□□□□ -1.36
VPS53-212ENST00000572259 A1CFQ9NQ94 594 aaKnown RBP6.58□□□□□ -1.36
VPS53-212ENST00000572259 KCND1Q9NSA2 647 aa6.58□□□□□ -1.36
VPS53-212ENST00000572259 FLRT1Q9NZU1 646 aa6.58□□□□□ -1.36
VPS53-212ENST00000572259 SEC63Q9UGP8 760 aaKnown RBP6.58□□□□□ -1.36
VPS53-212ENST00000572259 ZHX1Q9UKY1 873 aaPredicted RBP6.58□□□□□ -1.36
VPS53-212ENST00000572259 OGDHLQ9ULD0 1010 aa6.58□□□□□ -1.36
VPS53-212ENST00000572259 FAM184BQ9ULE4 1060 aa6.58□□□□□ -1.36
VPS53-212ENST00000572259 STXBP5LQ9Y2K9 1186 aa6.58□□□□□ -1.36
VPS53-212ENST00000572259 MKI67P46013 3256 aaKnown RBP6.58□□□□□ -1.36
VPS53-212ENST00000572259 PRSS38A1L453 326 aa6.57□□□□□ -1.36
VPS53-212ENST00000572259 H0Y858 1186 aa6.57□□□□□ -1.36
VPS53-212ENST00000572259 SH2B2O14492 632 aaPredicted RBP6.57□□□□□ -1.36
VPS53-212ENST00000572259 APOL1O14791 398 aa6.57□□□□□ -1.36
VPS53-212ENST00000572259 ZBTB5O15062 677 aa6.57□□□□□ -1.36
VPS53-212ENST00000572259 URI1O94763 535 aaPredicted RBP6.57□□□□□ -1.36
VPS53-212ENST00000572259 HSPA4LO95757 839 aa6.57□□□□□ -1.36
VPS53-212ENST00000572259 TSPAN15O95858 294 aa6.57□□□□□ -1.36
VPS53-212ENST00000572259 CLEC2LP0C7M8 214 aa6.57□□□□□ -1.36
VPS53-212ENST00000572259 CYBAP13498 195 aa6.57□□□□□ -1.36
VPS53-212ENST00000572259 ENPP1P22413 925 aa6.57□□□□□ -1.36
VPS53-212ENST00000572259 CALML3P27482 149 aa6.57□□□□□ -1.36
VPS53-212ENST00000572259 HSPA4P34932 840 aa6.57□□□□□ -1.36
VPS53-212ENST00000572259 ITGA8P53708 1063 aa6.57□□□□□ -1.36
VPS53-212ENST00000572259 NR1H2P55055 460 aa6.57□□□□□ -1.36
VPS53-212ENST00000572259 MANFP55145 182 aaKnown RBP6.57□□□□□ -1.36
VPS53-212ENST00000572259 RNASE9P60153 205 aaKnown RBP6.57□□□□□ -1.36
VPS53-212ENST00000572259 VAMP2P63027 116 aa6.57□□□□□ -1.36
VPS53-212ENST00000572259 CD83Q01151 205 aa6.57□□□□□ -1.36
VPS53-212ENST00000572259 TROAPQ12815 778 aa6.57□□□□□ -1.36
VPS53-212ENST00000572259 NFATC3Q12968 1075 aa6.57□□□□□ -1.36
VPS53-212ENST00000572259 CUL4AQ13619 759 aa6.57□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms