RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 SOX13Q9UN79 622 aa11.16□□□□□ -0.62
CLK3-226ENST00000569406 COL4A3BPQ9Y5P4 624 aa11.16□□□□□ -0.62
CLK3-226ENST00000569406 ASTN1O14525 1302 aa11.16□□□□□ -0.62
CLK3-226ENST00000569406 H0YIN7 160 aa11.16□□□□□ -0.62
CLK3-226ENST00000569406 TBX3O15119 743 aa11.16□□□□□ -0.62
CLK3-226ENST00000569406 RSL1D1O76021 490 aaKnown RBP11.16□□□□□ -0.62
CLK3-226ENST00000569406 FKBP3Q00688 224 aaKnown RBP11.16□□□□□ -0.62
CLK3-226ENST00000569406 ULK2Q8IYT8 1036 aa11.16□□□□□ -0.62
CLK3-226ENST00000569406 CATSPER1Q8NEC5 780 aa11.16□□□□□ -0.62
CLK3-226ENST00000569406 FIG4Q92562 907 aa11.16□□□□□ -0.62
CLK3-226ENST00000569406 C12orf43Q96C57 262 aaKnown RBP11.16□□□□□ -0.62
CLK3-226ENST00000569406 ZBED3Q96IU2 234 aaPredicted RBP11.16□□□□□ -0.62
CLK3-226ENST00000569406 SERPINB12Q96P63 405 aa11.16□□□□□ -0.62
CLK3-226ENST00000569406 PACSIN1Q9BY11 444 aa11.16□□□□□ -0.62
CLK3-226ENST00000569406 INPP5FQ9Y2H2 1132 aa11.16□□□□□ -0.62
CLK3-226ENST00000569406 LRRIQ4A6NIV6 560 aa11.16□□□□□ -0.62
CLK3-226ENST00000569406 FAM228BP0C875 321 aa11.16□□□□□ -0.62
CLK3-226ENST00000569406 HNF1BP35680 557 aa11.16□□□□□ -0.62
CLK3-226ENST00000569406 WDR4P57081 412 aaKnown RBP11.16□□□□□ -0.62
CLK3-226ENST00000569406 OTUD4Q01804 1114 aaKnown RBP11.16□□□□□ -0.62
CLK3-226ENST00000569406 TRIP13Q15645 432 aaPredicted RBP11.16□□□□□ -0.62
CLK3-226ENST00000569406 NAB2Q15742 525 aa11.16□□□□□ -0.62
CLK3-226ENST00000569406 SPDYAQ5MJ70 313 aa11.16□□□□□ -0.62
CLK3-226ENST00000569406 GPBP1Q86WP2 473 aa11.16□□□□□ -0.62
CLK3-226ENST00000569406 TCAIMQ8N3R3 496 aa11.16□□□□□ -0.62
CLK3-226ENST00000569406 PTCD3Q96EY7 689 aaKnown RBP11.16□□□□□ -0.62
CLK3-226ENST00000569406 KLC2Q9H0B6 622 aa11.16□□□□□ -0.62
CLK3-226ENST00000569406 HPS4Q9NQG7 708 aa11.16□□□□□ -0.62
CLK3-226ENST00000569406 SLC35C2Q9NQQ7 365 aa11.16□□□□□ -0.62
CLK3-226ENST00000569406 ZDHHC18Q9NUE0 388 aa11.16□□□□□ -0.62
CLK3-226ENST00000569406 WDR70Q9NW82 654 aa11.16□□□□□ -0.62
CLK3-226ENST00000569406 MRPL39Q9NYK5 338 aaKnown RBP11.16□□□□□ -0.62
CLK3-226ENST00000569406 PLK2Q9NYY3 685 aa11.16□□□□□ -0.62
CLK3-226ENST00000569406 NR2E1Q9Y466 385 aa11.16□□□□□ -0.62
CLK3-226ENST00000569406 AP4B1Q9Y6B7 739 aa11.16□□□□□ -0.62
CLK3-226ENST00000569406 KDM3AQ9Y4C1 1321 aa11.15□□□□□ -0.62
CLK3-226ENST00000569406 GPC4O75487 556 aa11.15□□□□□ -0.62
CLK3-226ENST00000569406 PSMD10O75832 226 aa11.15□□□□□ -0.62
CLK3-226ENST00000569406 MFN2O95140 757 aa11.15□□□□□ -0.62
CLK3-226ENST00000569406 ICAM2P13598 275 aa11.15□□□□□ -0.62
CLK3-226ENST00000569406 M6PRP20645 277 aa11.15□□□□□ -0.62
CLK3-226ENST00000569406 BLVRAP53004 296 aa11.15□□□□□ -0.62
CLK3-226ENST00000569406 EPHB1P54762 984 aa11.15□□□□□ -0.62
CLK3-226ENST00000569406 DNASE1L3Q13609 305 aa11.15□□□□□ -0.62
CLK3-226ENST00000569406 CORO6Q6QEF8 472 aa11.15□□□□□ -0.62
CLK3-226ENST00000569406 OTOP1Q7RTM1 612 aa11.15□□□□□ -0.62
CLK3-226ENST00000569406 NUDCD3Q8IVD9 361 aa11.15□□□□□ -0.62
CLK3-226ENST00000569406 MARVELD2Q8N4S9 558 aa11.15□□□□□ -0.62
CLK3-226ENST00000569406 FBXO27Q8NI29 283 aa11.15□□□□□ -0.62
CLK3-226ENST00000569406 SLC2A11Q9BYW1 496 aa11.15□□□□□ -0.62
CLK3-226ENST00000569406 SLC38A10Q9HBR0 1119 aa11.15□□□□□ -0.62
CLK3-226ENST00000569406 TMX2Q9Y320 296 aa11.15□□□□□ -0.62
CLK3-226ENST00000569406 A0A1W2PPW3 197 aa11.15□□□□□ -0.62
CLK3-226ENST00000569406 C2CD2LO14523 706 aa11.15□□□□□ -0.62
CLK3-226ENST00000569406 EDF1O60869 148 aaKnown RBP11.15□□□□□ -0.62
CLK3-226ENST00000569406 BMP3P12645 472 aa11.15□□□□□ -0.62
CLK3-226ENST00000569406 BMPR1AP36894 532 aa11.15□□□□□ -0.62
CLK3-226ENST00000569406 STX1BP61266 288 aa11.15□□□□□ -0.62
CLK3-226ENST00000569406 MRPS15P82914 257 aaKnown RBP11.15□□□□□ -0.62
CLK3-226ENST00000569406 TAGLNQ01995 201 aaKnown RBP11.15□□□□□ -0.62
CLK3-226ENST00000569406 BMT2Q1RMZ1 405 aa11.15□□□□□ -0.62
CLK3-226ENST00000569406 MFSD5Q6N075 450 aa11.15□□□□□ -0.62
CLK3-226ENST00000569406 PRR23BQ6ZRT6 265 aa11.15□□□□□ -0.62
CLK3-226ENST00000569406 FBXO11Q86XK2 927 aa11.15□□□□□ -0.62
CLK3-226ENST00000569406 DCP2Q8IU60 420 aaKnown RBP11.15□□□□□ -0.62
CLK3-226ENST00000569406 GALNT13Q8IUC8 556 aa11.15□□□□□ -0.62
CLK3-226ENST00000569406 SGF29Q96ES7 293 aa11.15□□□□□ -0.62
CLK3-226ENST00000569406 TARS2Q9BW92 718 aaKnown RBP11.15□□□□□ -0.62
CLK3-226ENST00000569406 MOV10Q9HCE1 1003 aaKnown RBP11.15□□□□□ -0.62
CLK3-226ENST00000569406 SIX2Q9NPC8 291 aa11.15□□□□□ -0.62
CLK3-226ENST00000569406 HERC5Q9UII4 1024 aaKnown RBP11.15□□□□□ -0.62
CLK3-226ENST00000569406 APOBEC2Q9Y235 224 aaKnown RBP11.15□□□□□ -0.62
CLK3-226ENST00000569406 POC1B-GALNT4F8VUJ3 575 aa11.15□□□□□ -0.63
CLK3-226ENST00000569406 TGFB1I1O43294 461 aa11.15□□□□□ -0.63
CLK3-226ENST00000569406 SLITRK3O94933 977 aa11.15□□□□□ -0.63
CLK3-226ENST00000569406 POLR2MP0CAP2 368 aa11.15□□□□□ -0.63
CLK3-226ENST00000569406 RARBP10826 455 aa11.15□□□□□ -0.63
CLK3-226ENST00000569406 ATF6P18850 670 aa11.15□□□□□ -0.63
CLK3-226ENST00000569406 PIK3CAP42336 1068 aa11.15□□□□□ -0.63
CLK3-226ENST00000569406 ESRRGP62508 458 aa11.15□□□□□ -0.63
CLK3-226ENST00000569406 COG2Q14746 738 aa11.15□□□□□ -0.63
CLK3-226ENST00000569406 ANO4Q32M45 955 aa11.15□□□□□ -0.63
CLK3-226ENST00000569406 C6orf52Q5T4I8 152 aa11.15□□□□□ -0.63
CLK3-226ENST00000569406 METTL2BQ6P1Q9 378 aaKnown RBP11.15□□□□□ -0.63
CLK3-226ENST00000569406 OTOAQ7RTW8 1153 aa11.15□□□□□ -0.63
CLK3-226ENST00000569406 TTC7BQ86TV6 843 aa11.15□□□□□ -0.63
CLK3-226ENST00000569406 AKAP14Q86UN6 197 aa11.15□□□□□ -0.63
CLK3-226ENST00000569406 AHI1Q8N157 1196 aa11.15□□□□□ -0.63
CLK3-226ENST00000569406 TBC1D15Q8TC07 691 aa11.15□□□□□ -0.63
CLK3-226ENST00000569406 KCTD4Q8WVF5 259 aa11.15□□□□□ -0.63
CLK3-226ENST00000569406 ZFYVE19Q96K21 471 aa11.15□□□□□ -0.63
CLK3-226ENST00000569406 GDAP2Q9NXN4 497 aa11.15□□□□□ -0.63
CLK3-226ENST00000569406 DNAJB4Q9UDY4 337 aa11.15□□□□□ -0.63
CLK3-226ENST00000569406 AP3M1Q9Y2T2 418 aa11.15□□□□□ -0.63
CLK3-226ENST00000569406 FAM47DPA6NHR8 397 aa11.14□□□□□ -0.63
CLK3-226ENST00000569406 POLR1CO15160 346 aaPredicted RBP11.14□□□□□ -0.63
CLK3-226ENST00000569406 DNAJA2O60884 412 aa11.14□□□□□ -0.63
CLK3-226ENST00000569406 AKAP3O75969 853 aa11.14□□□□□ -0.63
CLK3-226ENST00000569406 MAP3K6O95382 1288 aa11.14□□□□□ -0.63
CLK3-226ENST00000569406 PRAMEP78395 509 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms