RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 NIPA2Q8N8Q9 360 aa14.92□□□□□ -0.02
VPS35-210ENST00000568784 CMTM5Q96DZ9 223 aa14.92□□□□□ -0.02
VPS35-210ENST00000568784 WDR55Q9H6Y2 383 aaPredicted RBP14.92□□□□□ -0.02
VPS35-210ENST00000568784 ZNF214Q9UL59 606 aaPredicted RBP14.92□□□□□ -0.02
VPS35-210ENST00000568784 PCDHGC3Q9UN70 934 aa14.92□□□□□ -0.02
VPS35-210ENST00000568784 MYOCOSA0A1B0GUC4 107 aa14.92□□□□□ -0.02
VPS35-210ENST00000568784 ABLIM1O14639 778 aa14.92□□□□□ -0.02
VPS35-210ENST00000568784 FKBP6O75344 327 aa14.92□□□□□ -0.02
VPS35-210ENST00000568784 NELFEP18615 380 aaKnown RBP14.92□□□□□ -0.02
VPS35-210ENST00000568784 AVPR1AP37288 418 aa14.92□□□□□ -0.02
VPS35-210ENST00000568784 SERPINB9P50453 376 aa14.92□□□□□ -0.02
VPS35-210ENST00000568784 TMEM132DQ14C87 1099 aa14.92□□□□□ -0.02
VPS35-210ENST00000568784 SATL1Q86VE3 508 aa14.92□□□□□ -0.02
VPS35-210ENST00000568784 PYROXD2Q8N2H3 581 aa14.92□□□□□ -0.02
VPS35-210ENST00000568784 PHTF2Q8N3S3 785 aa14.92□□□□□ -0.02
VPS35-210ENST00000568784 COLGALT1Q8NBJ5 622 aa14.92□□□□□ -0.02
VPS35-210ENST00000568784 NDRG1Q92597 394 aaKnown RBP14.92□□□□□ -0.02
VPS35-210ENST00000568784 DHRS4Q9BTZ2 278 aa14.92□□□□□ -0.02
VPS35-210ENST00000568784 PDGFDQ9GZP0 370 aaPredicted RBP14.92□□□□□ -0.02
VPS35-210ENST00000568784 CPSF3Q9UKF6 684 aaKnown RBP14.92□□□□□ -0.02
VPS35-210ENST00000568784 PSAT1Q9Y617 370 aa14.92□□□□□ -0.02
VPS35-210ENST00000568784 A0A087WZ62 844 aa14.92□□□□□ -0.02
VPS35-210ENST00000568784 PEX1O43933 1283 aa14.92□□□□□ -0.02
VPS35-210ENST00000568784 DHRS4L1P0CG22 281 aa14.92□□□□□ -0.02
VPS35-210ENST00000568784 GARSP41250 739 aaKnown RBP14.92□□□□□ -0.02
VPS35-210ENST00000568784 ART3Q13508 389 aa14.92□□□□□ -0.02
VPS35-210ENST00000568784 TTLL12Q14166 644 aaPredicted RBP14.92□□□□□ -0.02
VPS35-210ENST00000568784 GJC2Q5T442 439 aaPredicted RBP14.92□□□□□ -0.02
VPS35-210ENST00000568784 DCLK2Q8N568 766 aa14.92□□□□□ -0.02
VPS35-210ENST00000568784 NDNQ99608 321 aa14.92□□□□□ -0.02
VPS35-210ENST00000568784 FDXACB1Q9BRP7 624 aaPredicted RBP14.92□□□□□ -0.02
VPS35-210ENST00000568784 AP4E1Q9UPM8 1137 aa14.92□□□□□ -0.02
VPS35-210ENST00000568784 DYNC1I2Q13409 638 aaKnown RBP14.91□□□□□ -0.02
VPS35-210ENST00000568784 MXD4Q14582 209 aaPredicted RBP14.91□□□□□ -0.02
VPS35-210ENST00000568784 CES4AQ5XG92 561 aa14.91□□□□□ -0.02
VPS35-210ENST00000568784 MARK2Q7KZI7 788 aaKnown RBP14.91□□□□□ -0.02
VPS35-210ENST00000568784 MPP4Q96JB8 637 aa14.91□□□□□ -0.02
VPS35-210ENST00000568784 OLFM3Q96PB7 478 aa14.91□□□□□ -0.02
VPS35-210ENST00000568784 GORASP1Q9BQQ3 440 aa14.91□□□□□ -0.02
VPS35-210ENST00000568784 XYLT2Q9H1B5 865 aa14.91□□□□□ -0.02
VPS35-210ENST00000568784 ARHGEF4Q9NR80 690 aa14.91□□□□□ -0.02
VPS35-210ENST00000568784 RHBDL2Q9NX52 303 aa14.91□□□□□ -0.02
VPS35-210ENST00000568784 ADA2Q9NZK5 511 aa14.91□□□□□ -0.02
VPS35-210ENST00000568784 EFR3BQ9Y2G0 817 aa14.91□□□□□ -0.02
VPS35-210ENST00000568784 STYXL1Q9Y6J8 313 aa14.91□□□□□ -0.02
VPS35-210ENST00000568784 GLRA3O75311 464 aa14.91□□□□□ -0.02
VPS35-210ENST00000568784 VDRP11473 427 aa14.91□□□□□ -0.02
VPS35-210ENST00000568784 CPA3P15088 417 aa14.91□□□□□ -0.02
VPS35-210ENST00000568784 TPH1P17752 444 aa14.91□□□□□ -0.02
VPS35-210ENST00000568784 DLG2Q15700 870 aa14.91□□□□□ -0.02
VPS35-210ENST00000568784 PDCD2Q16342 344 aaPredicted RBP14.91□□□□□ -0.02
VPS35-210ENST00000568784 CLEC4CQ8WTT0 213 aa14.91□□□□□ -0.02
VPS35-210ENST00000568784 TRAPPC9Q96Q05 1148 aa14.91□□□□□ -0.02
VPS35-210ENST00000568784 MINDY3Q9H8M7 445 aa14.91□□□□□ -0.02
VPS35-210ENST00000568784 ANLNQ9NQW6 1124 aa14.91□□□□□ -0.02
VPS35-210ENST00000568784 HOXC10Q9NYD6 342 aa14.91□□□□□ -0.02
VPS35-210ENST00000568784 TMEM216Q9P0N5 145 aa14.91□□□□□ -0.02
VPS35-210ENST00000568784 GPR25O00155 361 aa14.91□□□□□ -0.02
VPS35-210ENST00000568784 PDK3Q15120 406 aa14.91□□□□□ -0.02
VPS35-210ENST00000568784 MAP1SQ66K74 1059 aaPredicted RBP14.91□□□□□ -0.02
VPS35-210ENST00000568784 PMF1Q6P1K2 205 aa14.91□□□□□ -0.02
VPS35-210ENST00000568784 ADGRF2Q8IZF7 708 aa14.91□□□□□ -0.02
VPS35-210ENST00000568784 GRIP2Q9C0E4 1043 aa14.91□□□□□ -0.02
VPS35-210ENST00000568784 FAM49AQ9H0Q0 323 aaPredicted RBP14.91□□□□□ -0.02
VPS35-210ENST00000568784 TMEM134Q9H6X4 195 aa14.91□□□□□ -0.02
VPS35-210ENST00000568784 NRDE2Q9H7Z3 1164 aa14.91□□□□□ -0.02
VPS35-210ENST00000568784 COPS7BQ9H9Q2 264 aaPredicted RBP14.91□□□□□ -0.02
VPS35-210ENST00000568784 USP29Q9HBJ7 922 aa14.91□□□□□ -0.02
VPS35-210ENST00000568784 FETUBQ9UGM5 382 aa14.91□□□□□ -0.02
VPS35-210ENST00000568784 MAFBQ9Y5Q3 323 aaPredicted RBP14.91□□□□□ -0.02
VPS35-210ENST00000568784 TCRBV5S1A1TA0A578 114 aa14.9□□□□□ -0.02
VPS35-210ENST00000568784 SERPINE1P05121 402 aa14.9□□□□□ -0.02
VPS35-210ENST00000568784 SOX11P35716 441 aa14.9□□□□□ -0.02
VPS35-210ENST00000568784 GPD2P43304 727 aa14.9□□□□□ -0.02
VPS35-210ENST00000568784 FLOT2Q14254 428 aa14.9□□□□□ -0.02
VPS35-210ENST00000568784 PPP1R26Q5T8A7 1209 aaPredicted RBP14.9□□□□□ -0.02
VPS35-210ENST00000568784 SNX32Q86XE0 403 aa14.9□□□□□ -0.02
VPS35-210ENST00000568784 ZSCAN18Q8TBC5 510 aaPredicted RBP14.9□□□□□ -0.02
VPS35-210ENST00000568784 TMEM174Q8WUU8 243 aa14.9□□□□□ -0.02
VPS35-210ENST00000568784 PPWD1Q96BP3 646 aaKnown RBP14.9□□□□□ -0.02
VPS35-210ENST00000568784 OXCT2Q9BYC2 517 aaPredicted RBP14.9□□□□□ -0.02
VPS35-210ENST00000568784 SLC39A10Q9ULF5 831 aa14.9□□□□□ -0.02
VPS35-210ENST00000568784 ARHGAP26Q9UNA1 814 aa14.9□□□□□ -0.02
VPS35-210ENST00000568784 TAF1LQ8IZX4 1826 aa14.9□□□□□ -0.02
VPS35-210ENST00000568784 NFASCO94856 1347 aa14.9□□□□□ -0.02
VPS35-210ENST00000568784 MT-CO1P00395 513 aa14.9□□□□□ -0.02
VPS35-210ENST00000568784 GOT1P17174 413 aa14.9□□□□□ -0.02
VPS35-210ENST00000568784 RAP1GDS1P52306 607 aa14.9□□□□□ -0.02
VPS35-210ENST00000568784 TMED1Q13445 227 aa14.9□□□□□ -0.02
VPS35-210ENST00000568784 DLK2Q6UY11 383 aa14.9□□□□□ -0.02
VPS35-210ENST00000568784 FBXO16Q8IX29 292 aaPredicted RBP14.9□□□□□ -0.02
VPS35-210ENST00000568784 ARHGAP18Q8N392 663 aa14.9□□□□□ -0.02
VPS35-210ENST00000568784 GATA6Q92908 595 aa14.9□□□□□ -0.02
VPS35-210ENST00000568784 CDRT15Q96T59 188 aa14.9□□□□□ -0.02
VPS35-210ENST00000568784 C2orf40Q9H1Z8 148 aa14.9□□□□□ -0.02
VPS35-210ENST00000568784 CDH22Q9UJ99 828 aa14.9□□□□□ -0.02
VPS35-210ENST00000568784 CNTN6Q9UQ52 1028 aa14.9□□□□□ -0.02
VPS35-210ENST00000568784 SDR42E2A6NKP2 422 aa14.9□□□□□ -0.02
VPS35-210ENST00000568784 F8W8V4 182 aa14.9□□□□□ -0.02
VPS35-210ENST00000568784 HCRTO43612 131 aa14.9□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms