RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 SLC2A14Q8TDB8 520 aa13.3□□□□□ -0.28
LDLR-207ENST00000558013 TEKT4Q8WW24 435 aa13.3□□□□□ -0.28
LDLR-207ENST00000558013 DCPSQ96C86 337 aaKnown RBP13.3□□□□□ -0.28
LDLR-207ENST00000558013 RNF39Q9H2S5 420 aa13.3□□□□□ -0.28
LDLR-207ENST00000558013 ZNF180Q9UJW8 692 aa13.3□□□□□ -0.28
LDLR-207ENST00000558013 CLDN5O00501 218 aa13.3□□□□□ -0.28
LDLR-207ENST00000558013 TRDMT1O14717 391 aaKnown RBP13.3□□□□□ -0.28
LDLR-207ENST00000558013 MFSD11O43934 449 aa13.3□□□□□ -0.28
LDLR-207ENST00000558013 PSMG1O95456 288 aa13.3□□□□□ -0.28
LDLR-207ENST00000558013 AMHP03971 560 aa13.3□□□□□ -0.28
LDLR-207ENST00000558013 MLH1P40692 756 aa13.3□□□□□ -0.28
LDLR-207ENST00000558013 NDUFV1P49821 464 aa13.3□□□□□ -0.28
LDLR-207ENST00000558013 PEX6Q13608 980 aa13.3□□□□□ -0.28
LDLR-207ENST00000558013 R3HDM1Q15032 1099 aaKnown RBP13.3□□□□□ -0.28
LDLR-207ENST00000558013 DPYSL2Q16555 572 aa13.3□□□□□ -0.28
LDLR-207ENST00000558013 VWA5B1Q5TIE3 1220 aa13.3□□□□□ -0.28
LDLR-207ENST00000558013 ERO1BQ86YB8 467 aa13.3□□□□□ -0.28
LDLR-207ENST00000558013 SCG3Q8WXD2 468 aaKnown RBP13.3□□□□□ -0.28
LDLR-207ENST00000558013 USP6NLQ92738 828 aa13.3□□□□□ -0.28
LDLR-207ENST00000558013 AZIN2Q96A70 460 aa13.3□□□□□ -0.28
LDLR-207ENST00000558013 FAM149B1Q96BN6 582 aa13.3□□□□□ -0.28
LDLR-207ENST00000558013 MPHOSPH6Q99547 160 aaKnown RBP13.3□□□□□ -0.28
LDLR-207ENST00000558013 SYT15Q9BQS2 421 aa13.3□□□□□ -0.28
LDLR-207ENST00000558013 THTPAQ9BU02 230 aa13.3□□□□□ -0.28
LDLR-207ENST00000558013 HBS1LQ9Y450 684 aaKnown RBP13.3□□□□□ -0.28
LDLR-207ENST00000558013 CITO14578 2027 aa13.29□□□□□ -0.28
LDLR-207ENST00000558013 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP13.29□□□□□ -0.28
LDLR-207ENST00000558013 TPP1O14773 563 aa13.29□□□□□ -0.28
LDLR-207ENST00000558013 KLF11O14901 512 aa13.29□□□□□ -0.28
LDLR-207ENST00000558013 GCATO75600 419 aa13.29□□□□□ -0.28
LDLR-207ENST00000558013 BEST1O76090 585 aa13.29□□□□□ -0.28
LDLR-207ENST00000558013 LINGO3P0C6S8 592 aa13.29□□□□□ -0.28
LDLR-207ENST00000558013 ERVK-10P10266 1014 aa13.29□□□□□ -0.28
LDLR-207ENST00000558013 ATP6V1C1P21283 382 aa13.29□□□□□ -0.28
LDLR-207ENST00000558013 TKTP29401 623 aaKnown RBP13.29□□□□□ -0.28
LDLR-207ENST00000558013 CCNFP41002 786 aa13.29□□□□□ -0.28
LDLR-207ENST00000558013 MAGEA6P43360 314 aa13.29□□□□□ -0.28
LDLR-207ENST00000558013 AP1B1Q10567 949 aa13.29□□□□□ -0.28
LDLR-207ENST00000558013 FASTKD1Q53R41 847 aaKnown RBP13.29□□□□□ -0.28
LDLR-207ENST00000558013 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP13.29□□□□□ -0.28
LDLR-207ENST00000558013 ADAM32Q8TC27 787 aa13.29□□□□□ -0.28
LDLR-207ENST00000558013 FBXO41Q8TF61 875 aa13.29□□□□□ -0.28
LDLR-207ENST00000558013 KBTBD7Q8WVZ9 684 aa13.29□□□□□ -0.28
LDLR-207ENST00000558013 ZNF333Q96JL9 665 aa13.29□□□□□ -0.28
LDLR-207ENST00000558013 C7orf26Q96N11 449 aa13.29□□□□□ -0.28
LDLR-207ENST00000558013 OSMRQ99650 979 aa13.29□□□□□ -0.28
LDLR-207ENST00000558013 C11orf84Q9BUA3 381 aaPredicted RBP13.29□□□□□ -0.28
LDLR-207ENST00000558013 BATF3Q9NR55 127 aa13.29□□□□□ -0.28
LDLR-207ENST00000558013 MOCS1Q9NZB8 636 aa13.29□□□□□ -0.28
LDLR-207ENST00000558013 PCDHA11Q9Y5I1 949 aa13.29□□□□□ -0.28
LDLR-207ENST00000558013 SPDYE5A6NIY4 337 aa13.29□□□□□ -0.28
LDLR-207ENST00000558013 KCNK1O00180 336 aa13.29□□□□□ -0.28
LDLR-207ENST00000558013 NVLO15381 856 aaKnown RBP13.29□□□□□ -0.28
LDLR-207ENST00000558013 CD1EP15812 388 aa13.29□□□□□ -0.28
LDLR-207ENST00000558013 PDE1CQ14123 709 aaPredicted RBP13.29□□□□□ -0.28
LDLR-207ENST00000558013 KRT72Q14CN4 511 aa13.29□□□□□ -0.28
LDLR-207ENST00000558013 GRIK4Q16099 956 aa13.29□□□□□ -0.28
LDLR-207ENST00000558013 N4BP2L1Q5TBK1 243 aaPredicted RBP13.29□□□□□ -0.28
LDLR-207ENST00000558013 RSPH3Q86UC2 560 aa13.29□□□□□ -0.28
LDLR-207ENST00000558013 EFCAB3Q8N7B9 438 aa13.29□□□□□ -0.28
LDLR-207ENST00000558013 COLGALT1Q8NBJ5 622 aa13.29□□□□□ -0.28
LDLR-207ENST00000558013 CCNYQ8ND76 341 aa13.29□□□□□ -0.28
LDLR-207ENST00000558013 SMC1BQ8NDV3 1235 aa13.29□□□□□ -0.28
LDLR-207ENST00000558013 HTR3CQ8WXA8 447 aa13.29□□□□□ -0.28
LDLR-207ENST00000558013 ARNTL2Q8WYA1 636 aa13.29□□□□□ -0.28
LDLR-207ENST00000558013 AGAP3Q96P47 875 aa13.29□□□□□ -0.28
LDLR-207ENST00000558013 KCNK4Q9NYG8 393 aa13.29□□□□□ -0.28
LDLR-207ENST00000558013 KIAA1257Q9ULG3 409 aa13.29□□□□□ -0.28
LDLR-207ENST00000558013 CREB3O43889 395 aa13.28□□□□□ -0.28
LDLR-207ENST00000558013 ACAT1P24752 427 aaKnown RBP13.28□□□□□ -0.28
LDLR-207ENST00000558013 GJA5P36382 358 aa13.28□□□□□ -0.28
LDLR-207ENST00000558013 IREB2P48200 963 aaKnown RBP13.28□□□□□ -0.28
LDLR-207ENST00000558013 CCNHP51946 323 aaPredicted RBP13.28□□□□□ -0.28
LDLR-207ENST00000558013 STX3Q13277 289 aa13.28□□□□□ -0.28
LDLR-207ENST00000558013 LGSNQ5TDP6 509 aa13.28□□□□□ -0.28
LDLR-207ENST00000558013 CMC1Q7Z7K0 106 aa13.28□□□□□ -0.28
LDLR-207ENST00000558013 CDKL3Q8IVW4 592 aaPredicted RBP13.28□□□□□ -0.28
LDLR-207ENST00000558013 MCUQ8NE86 351 aa13.28□□□□□ -0.28
LDLR-207ENST00000558013 OXCT2Q9BYC2 517 aaPredicted RBP13.28□□□□□ -0.28
LDLR-207ENST00000558013 YIPF3Q9GZM5 350 aa13.28□□□□□ -0.28
LDLR-207ENST00000558013 MRPL42Q9Y6G3 142 aaKnown RBP13.28□□□□□ -0.28
LDLR-207ENST00000558013 SNNO75324 88 aaPredicted RBP13.28□□□□□ -0.28
LDLR-207ENST00000558013 USP1O94782 785 aa13.28□□□□□ -0.28
LDLR-207ENST00000558013 C6orf222P0C671 652 aaPredicted RBP13.28□□□□□ -0.28
LDLR-207ENST00000558013 PSMB4P28070 264 aa13.28□□□□□ -0.28
LDLR-207ENST00000558013 CRHR1P34998 444 aa13.28□□□□□ -0.28
LDLR-207ENST00000558013 DCAF6Q58WW2 860 aa13.28□□□□□ -0.28
LDLR-207ENST00000558013 IFNLR1Q8IU57 520 aaPredicted RBP13.28□□□□□ -0.28
LDLR-207ENST00000558013 CRLF3Q8IUI8 442 aa13.28□□□□□ -0.28
LDLR-207ENST00000558013 TNS4Q8IZW8 715 aa13.28□□□□□ -0.28
LDLR-207ENST00000558013 DEFB106AQ8N104 65 aa13.28□□□□□ -0.28
LDLR-207ENST00000558013 QKIQ96PU8 341 aaKnown RBP eCLIP13.28□□□□□ -0.28
LDLR-207ENST00000558013 PNPOQ9NVS9 261 aa13.28□□□□□ -0.28
LDLR-207ENST00000558013 DNAJC16Q9Y2G8 782 aa13.28□□□□□ -0.28
LDLR-207ENST00000558013 RNF103O00237 685 aa13.28□□□□□ -0.28
LDLR-207ENST00000558013 RECQL4O94761 1208 aa13.28□□□□□ -0.28
LDLR-207ENST00000558013 GRM5P41594 1212 aa13.28□□□□□ -0.28
LDLR-207ENST00000558013 SLC25A3Q00325 362 aa13.28□□□□□ -0.28
LDLR-207ENST00000558013 SOX4Q06945 474 aaPredicted RBP13.28□□□□□ -0.28
LDLR-207ENST00000558013 NME3Q13232 169 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms