RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 SNX25Q9H3E2 840 aa13.17□□□□□ -0.3
SHMT2-230ENST00000557427 METTL14Q9HCE5 456 aaKnown RBP13.17□□□□□ -0.3
SHMT2-230ENST00000557427 FRMD4BQ9Y2L6 1034 aa13.17□□□□□ -0.3
SHMT2-230ENST00000557427 EPN1Q9Y6I3 576 aaPredicted RBP13.17□□□□□ -0.3
SHMT2-230ENST00000557427 ANAPC1Q9H1A4 1944 aa13.17□□□□□ -0.3
SHMT2-230ENST00000557427 TRAV19A0A0A6YYK7 116 aa13.16□□□□□ -0.3
SHMT2-230ENST00000557427 NDUFA10O95299 355 aa13.16□□□□□ -0.3
SHMT2-230ENST00000557427 C4BPAP04003 597 aaKnown RBP13.16□□□□□ -0.3
SHMT2-230ENST00000557427 CKMP06732 381 aa13.16□□□□□ -0.3
SHMT2-230ENST00000557427 CSH1P0DML2 217 aa13.16□□□□□ -0.3
SHMT2-230ENST00000557427 CSH2P0DML3 217 aa13.16□□□□□ -0.3
SHMT2-230ENST00000557427 TCF3P15923 654 aa13.16□□□□□ -0.3
SHMT2-230ENST00000557427 NR2F2P24468 414 aa13.16□□□□□ -0.3
SHMT2-230ENST00000557427 PCSK1P29120 753 aa13.16□□□□□ -0.3
SHMT2-230ENST00000557427 CYLC1P35663 651 aaPredicted RBP13.16□□□□□ -0.3
SHMT2-230ENST00000557427 KLK7P49862 253 aa13.16□□□□□ -0.3
SHMT2-230ENST00000557427 TNNC1P63316 161 aa13.16□□□□□ -0.3
SHMT2-230ENST00000557427 BNC1Q01954 994 aa13.16□□□□□ -0.3
SHMT2-230ENST00000557427 WDR59Q6PJI9 974 aa13.16□□□□□ -0.3
SHMT2-230ENST00000557427 DBX2Q6ZNG2 339 aa13.16□□□□□ -0.3
SHMT2-230ENST00000557427 ZNF662Q6ZS27 426 aa13.16□□□□□ -0.3
SHMT2-230ENST00000557427 SCN4BQ8IWT1 228 aa13.16□□□□□ -0.3
SHMT2-230ENST00000557427 CCDC170Q8IYT3 715 aa13.16□□□□□ -0.3
SHMT2-230ENST00000557427 PHTF2Q8N3S3 785 aa13.16□□□□□ -0.3
SHMT2-230ENST00000557427 MYRFLQ96LU7 910 aa13.16□□□□□ -0.3
SHMT2-230ENST00000557427 FCRL3Q96P31 734 aaPredicted RBP13.16□□□□□ -0.3
SHMT2-230ENST00000557427 PNKPQ96T60 521 aa13.16□□□□□ -0.3
SHMT2-230ENST00000557427 CHP1Q99653 195 aa13.16□□□□□ -0.3
SHMT2-230ENST00000557427 SYT15Q9BQS2 421 aa13.16□□□□□ -0.3
SHMT2-230ENST00000557427 PRDM16Q9HAZ2 1276 aa13.16□□□□□ -0.3
SHMT2-230ENST00000557427 CD248Q9HCU0 757 aa13.16□□□□□ -0.3
SHMT2-230ENST00000557427 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.16□□□□□ -0.3
SHMT2-230ENST00000557427 DNAI1Q9UI46 699 aa13.16□□□□□ -0.3
SHMT2-230ENST00000557427 UTP18Q9Y5J1 556 aaKnown RBP eCLIP13.16□□□□□ -0.3
SHMT2-230ENST00000557427 MYOFQ9NZM1 2061 aa13.16□□□□□ -0.3
SHMT2-230ENST00000557427 A0A1W2PQF6 199 aa13.15□□□□□ -0.3
SHMT2-230ENST00000557427 GOLGA8CPA6NN73 597 aa13.15□□□□□ -0.3
SHMT2-230ENST00000557427 NOL4O94818 638 aa13.15□□□□□ -0.3
SHMT2-230ENST00000557427 SLU7O95391 586 aaKnown RBP13.15□□□□□ -0.3
SHMT2-230ENST00000557427 WARSP23381 471 aaKnown RBP13.15□□□□□ -0.3
SHMT2-230ENST00000557427 CASQ1P31415 396 aa13.15□□□□□ -0.3
SHMT2-230ENST00000557427 AP3M2P53677 418 aa13.15□□□□□ -0.3
SHMT2-230ENST00000557427 CDH8P55286 799 aa13.15□□□□□ -0.3
SHMT2-230ENST00000557427 GNG11P61952 73 aa13.15□□□□□ -0.3
SHMT2-230ENST00000557427 CYP27A1Q02318 531 aa13.15□□□□□ -0.3
SHMT2-230ENST00000557427 SRSF1Q07955 248 aaKnown RBP eCLIP13.15□□□□□ -0.3
SHMT2-230ENST00000557427 KCNMA1Q12791 1236 aa13.15□□□□□ -0.3
SHMT2-230ENST00000557427 DHCR24Q15392 516 aa13.15□□□□□ -0.3
SHMT2-230ENST00000557427 SMAD1Q15797 465 aaKnown RBP13.15□□□□□ -0.3
SHMT2-230ENST00000557427 TDRD10Q5VZ19 366 aaKnown RBP13.15□□□□□ -0.3
SHMT2-230ENST00000557427 FAM171BQ6P995 826 aa13.15□□□□□ -0.3
SHMT2-230ENST00000557427 LIMS2Q7Z4I7 341 aa13.15□□□□□ -0.3
SHMT2-230ENST00000557427 GALNT15Q8N3T1 639 aa13.15□□□□□ -0.3
SHMT2-230ENST00000557427 NEK11Q8NG66 645 aa13.15□□□□□ -0.3
SHMT2-230ENST00000557427 TRMT2BQ96GJ1 504 aaKnown RBP13.15□□□□□ -0.3
SHMT2-230ENST00000557427 PKMYT1Q99640 499 aa13.15□□□□□ -0.3
SHMT2-230ENST00000557427 NUCKS1Q9H1E3 243 aaKnown RBP13.15□□□□□ -0.3
SHMT2-230ENST00000557427 CLMPQ9H6B4 373 aa13.15□□□□□ -0.3
SHMT2-230ENST00000557427 MMRN2Q9H8L6 949 aa13.15□□□□□ -0.3
SHMT2-230ENST00000557427 CRTAC1Q9NQ79 661 aa13.15□□□□□ -0.3
SHMT2-230ENST00000557427 MYO1AQ9UBC5 1043 aa13.15□□□□□ -0.3
SHMT2-230ENST00000557427 CDH9Q9ULB4 789 aa13.15□□□□□ -0.3
SHMT2-230ENST00000557427 ARHGAP26Q9UNA1 814 aa13.15□□□□□ -0.3
SHMT2-230ENST00000557427 CYP8B1Q9UNU6 501 aa13.15□□□□□ -0.3
SHMT2-230ENST00000557427 BTBD3Q9Y2F9 522 aa13.15□□□□□ -0.3
SHMT2-230ENST00000557427 FNDC3AQ9Y2H6 1198 aaKnown RBP13.15□□□□□ -0.3
SHMT2-230ENST00000557427 A8MXQ7 604 aa13.14□□□□□ -0.31
SHMT2-230ENST00000557427 EIF3CLB5ME19 914 aaKnown RBP13.14□□□□□ -0.31
SHMT2-230ENST00000557427 PLK4O00444 970 aa13.14□□□□□ -0.31
SHMT2-230ENST00000557427 SCAMP3O14828 347 aaKnown RBP13.14□□□□□ -0.31
SHMT2-230ENST00000557427 KIF5CO60282 957 aa13.14□□□□□ -0.31
SHMT2-230ENST00000557427 VNN1O95497 513 aa13.14□□□□□ -0.31
SHMT2-230ENST00000557427 APODP05090 189 aa13.14□□□□□ -0.31
SHMT2-230ENST00000557427 EPB41P11171 864 aaKnown RBP13.14□□□□□ -0.31
SHMT2-230ENST00000557427 HDCP19113 662 aa13.14□□□□□ -0.31
SHMT2-230ENST00000557427 BDNFP23560 247 aa13.14□□□□□ -0.31
SHMT2-230ENST00000557427 ATICP31939 592 aa13.14□□□□□ -0.31
SHMT2-230ENST00000557427 GRIK1P39086 918 aa13.14□□□□□ -0.31
SHMT2-230ENST00000557427 RPL10AP62906 217 aaKnown RBP13.14□□□□□ -0.31
SHMT2-230ENST00000557427 KRT83P78385 493 aa13.14□□□□□ -0.31
SHMT2-230ENST00000557427 KDSRQ06136 332 aa13.14□□□□□ -0.31
SHMT2-230ENST00000557427 NCOA4Q13772 614 aa13.14□□□□□ -0.31
SHMT2-230ENST00000557427 ZNF699Q32M78 642 aa13.14□□□□□ -0.31
SHMT2-230ENST00000557427 MDH1BQ5I0G3 518 aa13.14□□□□□ -0.31
SHMT2-230ENST00000557427 RHBDF2Q6PJF5 856 aa13.14□□□□□ -0.31
SHMT2-230ENST00000557427 MIB1Q86YT6 1006 aa13.14□□□□□ -0.31
SHMT2-230ENST00000557427 RGL4Q8IZJ4 473 aa13.14□□□□□ -0.31
SHMT2-230ENST00000557427 ACRBPQ8NEB7 543 aa13.14□□□□□ -0.31
SHMT2-230ENST00000557427 SPATA18Q8TC71 538 aa13.14□□□□□ -0.31
SHMT2-230ENST00000557427 TMC2Q8TDI7 906 aa13.14□□□□□ -0.31
SHMT2-230ENST00000557427 SYN2Q92777 582 aaPredicted RBP13.14□□□□□ -0.31
SHMT2-230ENST00000557427 MYLPFQ96A32 169 aa13.14□□□□□ -0.31
SHMT2-230ENST00000557427 ERLEC1Q96DZ1 483 aa13.14□□□□□ -0.31
SHMT2-230ENST00000557427 EIF3CQ99613 913 aaKnown RBP13.14□□□□□ -0.31
SHMT2-230ENST00000557427 XYLT2Q9H1B5 865 aa13.14□□□□□ -0.31
SHMT2-230ENST00000557427 FAM124BQ9H5Z6 455 aaPredicted RBP13.14□□□□□ -0.31
SHMT2-230ENST00000557427 ARMCX3Q9UH62 379 aaPredicted RBP13.14□□□□□ -0.31
SHMT2-230ENST00000557427 NME7Q9Y5B8 376 aa13.14□□□□□ -0.31
SHMT2-230ENST00000557427 LEFTY2O00292 366 aa13.13□□□□□ -0.31
SHMT2-230ENST00000557427 CAPN9O14815 690 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms