RNA–Protein interactions for RNA: ENST00000553683.1

VRK1-202, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 247 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-202ENST00000553683 TTLL2Q9BWV7 592 aa3.82□□□□□ -1.8
VRK1-202ENST00000553683 AGO4Q9HCK5 861 aaKnown RBP3.82□□□□□ -1.8
VRK1-202ENST00000553683 FBXO28Q9NVF7 368 aa3.82□□□□□ -1.8
VRK1-202ENST00000553683 RNF7Q9UBF6 113 aa3.82□□□□□ -1.8
VRK1-202ENST00000553683 CACNA1IQ9P0X4 2223 aa3.82□□□□□ -1.8
VRK1-202ENST00000553683 SOCS2O14508 198 aa3.81□□□□□ -1.8
VRK1-202ENST00000553683 PRYO14603 147 aa3.81□□□□□ -1.8
VRK1-202ENST00000553683 ANXA6P08133 673 aa3.81□□□□□ -1.8
VRK1-202ENST00000553683 ITGA5P08648 1049 aa3.81□□□□□ -1.8
VRK1-202ENST00000553683 IFIT2P09913 472 aaKnown RBP3.81□□□□□ -1.8
VRK1-202ENST00000553683 TFEBP19484 476 aa3.81□□□□□ -1.8
VRK1-202ENST00000553683 NDUFS1P28331 727 aa3.81□□□□□ -1.8
VRK1-202ENST00000553683 SLC8A1P32418 973 aa3.81□□□□□ -1.8
VRK1-202ENST00000553683 TECP42680 631 aa3.81□□□□□ -1.8
VRK1-202ENST00000553683 NEK3P51956 506 aa3.81□□□□□ -1.8
VRK1-202ENST00000553683 POLE2P56282 527 aa3.81□□□□□ -1.8
VRK1-202ENST00000553683 DMWDQ09019 674 aa3.81□□□□□ -1.8
VRK1-202ENST00000553683 BFSP2Q13515 415 aa3.81□□□□□ -1.8
VRK1-202ENST00000553683 STIM1Q13586 685 aa3.81□□□□□ -1.8
VRK1-202ENST00000553683 KPNB1Q14974 876 aaKnown RBP3.81□□□□□ -1.8
VRK1-202ENST00000553683 ETFDHQ16134 617 aa3.81□□□□□ -1.8
VRK1-202ENST00000553683 MAP9Q49MG5 647 aa3.81□□□□□ -1.8
VRK1-202ENST00000553683 Q4G0T1 1027 aa3.81□□□□□ -1.8
VRK1-202ENST00000553683 ARHGAP15Q53QZ3 475 aa3.81□□□□□ -1.8
VRK1-202ENST00000553683 AWAT1Q58HT5 328 aa3.81□□□□□ -1.8
VRK1-202ENST00000553683 MSANTD2Q6P1R3 559 aa3.81□□□□□ -1.8
VRK1-202ENST00000553683 SYTL1Q8IYJ3 562 aa3.81□□□□□ -1.8
VRK1-202ENST00000553683 ADPRHL1Q8NDY3 354 aa3.81□□□□□ -1.8
VRK1-202ENST00000553683 PARD3BQ8TEW8 1205 aa3.81□□□□□ -1.8
VRK1-202ENST00000553683 KIAA1191Q96A73 305 aa3.81□□□□□ -1.8
VRK1-202ENST00000553683 EID2BQ96D98 161 aa3.81□□□□□ -1.8
VRK1-202ENST00000553683 ZFYVE19Q96K21 471 aa3.81□□□□□ -1.8
VRK1-202ENST00000553683 FCRL5Q96RD9 977 aa3.81□□□□□ -1.8
VRK1-202ENST00000553683 TRMOQ9BU70 441 aa3.81□□□□□ -1.8
VRK1-202ENST00000553683 TP63Q9H3D4 680 aaPredicted RBP3.81□□□□□ -1.8
VRK1-202ENST00000553683 SLC39A10Q9ULF5 831 aa3.81□□□□□ -1.8
VRK1-202ENST00000553683 PCDHB7Q9Y5E2 793 aa3.81□□□□□ -1.8
VRK1-202ENST00000553683 HEMK1Q9Y5R4 338 aaPredicted RBP3.81□□□□□ -1.8
VRK1-202ENST00000553683 EMSYQ7Z589 1322 aa3.8□□□□□ -1.8
VRK1-202ENST00000553683 ZNF521Q96K83 1311 aa3.8□□□□□ -1.8
VRK1-202ENST00000553683 LY6G6EA0A0G2JKS1 128 aa3.8□□□□□ -1.8
VRK1-202ENST00000553683 C3orf70A6NLC5 250 aaPredicted RBP3.8□□□□□ -1.8
VRK1-202ENST00000553683 J3KTA2 159 aa3.8□□□□□ -1.8
VRK1-202ENST00000553683 RRHO14718 337 aa3.8□□□□□ -1.8
VRK1-202ENST00000553683 NKX2-8O15522 239 aa3.8□□□□□ -1.8
VRK1-202ENST00000553683 PRPF4O43172 522 aaKnown RBP eCLIP3.8□□□□□ -1.8
VRK1-202ENST00000553683 TAF5LO75529 589 aa3.8□□□□□ -1.8
VRK1-202ENST00000553683 IGFBP2P18065 325 aa3.8□□□□□ -1.8
VRK1-202ENST00000553683 IDUAP35475 653 aa3.8□□□□□ -1.8
VRK1-202ENST00000553683 PPM1AP35813 382 aa3.8□□□□□ -1.8
VRK1-202ENST00000553683 NR4A2P43354 598 aa3.8□□□□□ -1.8
VRK1-202ENST00000553683 ALDH18A1P54886 795 aaKnown RBP3.8□□□□□ -1.8
VRK1-202ENST00000553683 B4GALNT1Q00973 533 aa3.8□□□□□ -1.8
VRK1-202ENST00000553683 TLE3Q04726 772 aa3.8□□□□□ -1.8
VRK1-202ENST00000553683 ELF2Q15723 593 aa3.8□□□□□ -1.8
VRK1-202ENST00000553683 TRIM60Q495X7 471 aa3.8□□□□□ -1.8
VRK1-202ENST00000553683 KRTAP5-3Q6L8H2 238 aa3.8□□□□□ -1.8
VRK1-202ENST00000553683 TMEM88Q6PEY1 159 aa3.8□□□□□ -1.8
VRK1-202ENST00000553683 KYAT3Q6YP21 454 aaKnown RBP3.8□□□□□ -1.8
VRK1-202ENST00000553683 FAM57BQ71RH2 274 aa3.8□□□□□ -1.8
VRK1-202ENST00000553683 PIP4P1Q86T03 277 aa3.8□□□□□ -1.8
VRK1-202ENST00000553683 TRABD2AQ86V40 505 aa3.8□□□□□ -1.8
VRK1-202ENST00000553683 ANKRD13BQ86YJ7 626 aa3.8□□□□□ -1.8
VRK1-202ENST00000553683 GATAD2AQ86YP4 633 aa3.8□□□□□ -1.8
VRK1-202ENST00000553683 RFX6Q8HWS3 928 aa3.8□□□□□ -1.8
VRK1-202ENST00000553683 FAM47BQ8NA70 645 aa3.8□□□□□ -1.8
VRK1-202ENST00000553683 SRFBP1Q8NEF9 429 aaKnown RBP3.8□□□□□ -1.8
VRK1-202ENST00000553683 PIGKQ92643 395 aa3.8□□□□□ -1.8
VRK1-202ENST00000553683 KAT2BQ92831 832 aa3.8□□□□□ -1.8
VRK1-202ENST00000553683 CELF1Q92879 486 aaKnown RBP3.8□□□□□ -1.8
VRK1-202ENST00000553683 ZNF48Q96MX3 618 aaPredicted RBP3.8□□□□□ -1.8
VRK1-202ENST00000553683 TUBB6Q9BUF5 446 aa3.8□□□□□ -1.8
VRK1-202ENST00000553683 TM2D2Q9BX73 214 aa3.8□□□□□ -1.8
VRK1-202ENST00000553683 TRIM2Q9C040 744 aa3.8□□□□□ -1.8
VRK1-202ENST00000553683 CHST12Q9NRB3 414 aa3.8□□□□□ -1.8
VRK1-202ENST00000553683 ASNSD1Q9NWL6 643 aa3.8□□□□□ -1.8
VRK1-202ENST00000553683 TRNAU1APQ9NX07 287 aaKnown RBP3.8□□□□□ -1.8
VRK1-202ENST00000553683 ELOVL5Q9NYP7 299 aa3.8□□□□□ -1.8
VRK1-202ENST00000553683 LOC105369274A0A096LPK9 316 aa3.79□□□□□ -1.8
VRK1-202ENST00000553683 LOC102723532A0A0G2JNH3 316 aa3.79□□□□□ -1.8
VRK1-202ENST00000553683 C2CD4BA6NLJ0 364 aa3.79□□□□□ -1.8
VRK1-202ENST00000553683 C16orf96A6NNT2 1141 aa3.79□□□□□ -1.8
VRK1-202ENST00000553683 PCDH17O14917 1159 aa3.79□□□□□ -1.8
VRK1-202ENST00000553683 FFAR2O15552 330 aa3.79□□□□□ -1.8
VRK1-202ENST00000553683 CYP3A4P08684 503 aa3.79□□□□□ -1.8
VRK1-202ENST00000553683 SETSIPP0DME0 302 aa3.79□□□□□ -1.8
VRK1-202ENST00000553683 HOXA7P31268 230 aaPredicted RBP3.79□□□□□ -1.8
VRK1-202ENST00000553683 SOX2P48431 317 aa3.79□□□□□ -1.8
VRK1-202ENST00000553683 AGTR2P50052 363 aa3.79□□□□□ -1.8
VRK1-202ENST00000553683 YPEL5P62699 121 aa3.79□□□□□ -1.8
VRK1-202ENST00000553683 HNRNPA0Q13151 305 aaKnown RBP3.79□□□□□ -1.8
VRK1-202ENST00000553683 PTK2BQ14289 1009 aa3.79□□□□□ -1.8
VRK1-202ENST00000553683 RBMS2Q15434 407 aaKnown RBP3.79□□□□□ -1.8
VRK1-202ENST00000553683 WDR93Q6P2C0 686 aa3.79□□□□□ -1.8
VRK1-202ENST00000553683 PGBD2Q6P3X8 592 aa3.79□□□□□ -1.8
VRK1-202ENST00000553683 SHC4Q6S5L8 630 aa3.79□□□□□ -1.8
VRK1-202ENST00000553683 ZNF474Q6S9Z5 364 aaPredicted RBP3.79□□□□□ -1.8
VRK1-202ENST00000553683 KRT27Q7Z3Y8 459 aa3.79□□□□□ -1.8
VRK1-202ENST00000553683 TFAP2DQ7Z6R9 452 aa3.79□□□□□ -1.8
VRK1-202ENST00000553683 CCDC146Q8IYE0 955 aa3.79□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms