RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 BBS12Q6ZW61 710 aa13□□□□□ -0.33
USP53-209ENST00000514665 ZNF333Q96JL9 665 aa13□□□□□ -0.33
USP53-209ENST00000514665 SNRNP25Q9BV90 132 aaKnown RBP13□□□□□ -0.33
USP53-209ENST00000514665 RNPEPL1Q9HAU8 725 aa13□□□□□ -0.33
USP53-209ENST00000514665 ETNK2Q9NVF9 386 aa13□□□□□ -0.33
USP53-209ENST00000514665 CDKN2AIPQ9NXV6 580 aaPredicted RBP13□□□□□ -0.33
USP53-209ENST00000514665 ZNF229Q9UJW7 825 aa13□□□□□ -0.33
USP53-209ENST00000514665 APPL1Q9UKG1 709 aa13□□□□□ -0.33
USP53-209ENST00000514665 PNMA8BQ9ULN7 279 aaPredicted RBP13□□□□□ -0.33
USP53-209ENST00000514665 C16orf96A6NNT2 1141 aa13□□□□□ -0.33
USP53-209ENST00000514665 PRPF4O43172 522 aaKnown RBP eCLIP13□□□□□ -0.33
USP53-209ENST00000514665 AVILO75366 819 aa13□□□□□ -0.33
USP53-209ENST00000514665 BAIAP3O94812 1187 aa13□□□□□ -0.33
USP53-209ENST00000514665 FBXO21O94952 628 aa13□□□□□ -0.33
USP53-209ENST00000514665 CCNE2O96020 404 aa13□□□□□ -0.33
USP53-209ENST00000514665 SERPIND1P05546 499 aa13□□□□□ -0.33
USP53-209ENST00000514665 ATP6V1E1P36543 226 aa13□□□□□ -0.33
USP53-209ENST00000514665 MMP13P45452 471 aa13□□□□□ -0.33
USP53-209ENST00000514665 NAGLUP54802 743 aa13□□□□□ -0.33
USP53-209ENST00000514665 LRRC38Q5VT99 294 aa13□□□□□ -0.33
USP53-209ENST00000514665 SNX32Q86XE0 403 aa13□□□□□ -0.33
USP53-209ENST00000514665 C12orf29Q8N999 325 aa13□□□□□ -0.33
USP53-209ENST00000514665 ADARB2Q9NS39 739 aaKnown RBP13□□□□□ -0.33
USP53-209ENST00000514665 GPRC5DQ9NZD1 345 aa13□□□□□ -0.33
USP53-209ENST00000514665 DRG1Q9Y295 367 aaKnown RBP13□□□□□ -0.33
USP53-209ENST00000514665 LRCH1Q9Y2L9 728 aa13□□□□□ -0.33
USP53-209ENST00000514665 UBDO15205 165 aa12.99□□□□□ -0.33
USP53-209ENST00000514665 DDX3YO15523 660 aaKnown RBP12.99□□□□□ -0.33
USP53-209ENST00000514665 PSMC3P17980 439 aa12.99□□□□□ -0.33
USP53-209ENST00000514665 PSMA4P25789 261 aaKnown RBP12.99□□□□□ -0.33
USP53-209ENST00000514665 HOXD10P28358 340 aa12.99□□□□□ -0.33
USP53-209ENST00000514665 EML3Q32P44 896 aa12.99□□□□□ -0.33
USP53-209ENST00000514665 CRY2Q49AN0 593 aa12.99□□□□□ -0.33
USP53-209ENST00000514665 ZC3H12AQ5D1E8 599 aaKnown RBP12.99□□□□□ -0.33
USP53-209ENST00000514665 LRRC74BQ6ZQY2 392 aa12.99□□□□□ -0.33
USP53-209ENST00000514665 RRM2BQ7LG56 351 aa12.99□□□□□ -0.33
USP53-209ENST00000514665 SNX31Q8N9S9 440 aa12.99□□□□□ -0.33
USP53-209ENST00000514665 JOSD2Q8TAC2 188 aa12.99□□□□□ -0.33
USP53-209ENST00000514665 SNRNP27Q8WVK2 155 aaKnown RBP12.99□□□□□ -0.33
USP53-209ENST00000514665 ULBP1Q9BZM6 244 aa12.99□□□□□ -0.33
USP53-209ENST00000514665 KLHL4Q9C0H6 718 aa12.99□□□□□ -0.33
USP53-209ENST00000514665 hCG_1818297A0A087WSY0 165 aa12.99□□□□□ -0.33
USP53-209ENST00000514665 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP12.99□□□□□ -0.33
USP53-209ENST00000514665 CLPTM1O96005 669 aa12.99□□□□□ -0.33
USP53-209ENST00000514665 ALADP13716 330 aa12.99□□□□□ -0.33
USP53-209ENST00000514665 PAX7P23759 505 aa12.99□□□□□ -0.33
USP53-209ENST00000514665 CD151P48509 253 aa12.99□□□□□ -0.33
USP53-209ENST00000514665 TGFB2P61812 414 aa12.99□□□□□ -0.33
USP53-209ENST00000514665 ZNF177Q13360 481 aaPredicted RBP12.99□□□□□ -0.33
USP53-209ENST00000514665 TMEM132BQ14DG7 1078 aa12.99□□□□□ -0.33
USP53-209ENST00000514665 OASLQ15646 514 aaKnown RBP12.99□□□□□ -0.33
USP53-209ENST00000514665 PDK4Q16654 411 aa12.99□□□□□ -0.33
USP53-209ENST00000514665 MARC1Q5VT66 337 aa12.99□□□□□ -0.33
USP53-209ENST00000514665 ZBTB49Q6ZSB9 765 aa12.99□□□□□ -0.33
USP53-209ENST00000514665 LRRC57Q8N9N7 239 aa12.99□□□□□ -0.33
USP53-209ENST00000514665 PYDC1Q8WXC3 89 aa12.99□□□□□ -0.33
USP53-209ENST00000514665 CCDC126Q96EE4 140 aa12.99□□□□□ -0.33
USP53-209ENST00000514665 PGLYRP2Q96PD5 576 aa12.99□□□□□ -0.33
USP53-209ENST00000514665 WWOXQ9NZC7 414 aa12.99□□□□□ -0.33
USP53-209ENST00000514665 SYNPO2Q9UMS6 1093 aa12.99□□□□□ -0.33
USP53-209ENST00000514665 TBC1D4O60343 1298 aa12.99□□□□□ -0.33
USP53-209ENST00000514665 SMNDC1O75940 238 aaKnown RBP eCLIP12.99□□□□□ -0.33
USP53-209ENST00000514665 LCA5LO95447 670 aa12.99□□□□□ -0.33
USP53-209ENST00000514665 ADORA2AP29274 412 aa12.99□□□□□ -0.33
USP53-209ENST00000514665 LHX1P48742 406 aa12.99□□□□□ -0.33
USP53-209ENST00000514665 SCNN1BP51168 640 aa12.99□□□□□ -0.33
USP53-209ENST00000514665 PKNOX1P55347 436 aa12.99□□□□□ -0.33
USP53-209ENST00000514665 CCDC85BQ15834 202 aaPredicted RBP12.99□□□□□ -0.33
USP53-209ENST00000514665 WLSQ5T9L3 541 aa12.99□□□□□ -0.33
USP53-209ENST00000514665 NAIF1Q69YI7 327 aaPredicted RBP12.99□□□□□ -0.33
USP53-209ENST00000514665 PHF13Q86YI8 300 aaPredicted RBP12.99□□□□□ -0.33
USP53-209ENST00000514665 OR52K1Q8NGK4 314 aa12.99□□□□□ -0.33
USP53-209ENST00000514665 OTULINQ96BN8 352 aa12.99□□□□□ -0.33
USP53-209ENST00000514665 RNF157Q96PX1 679 aa12.99□□□□□ -0.33
USP53-209ENST00000514665 CDRT15Q96T59 188 aa12.99□□□□□ -0.33
USP53-209ENST00000514665 TMEM134Q9H6X4 195 aa12.99□□□□□ -0.33
USP53-209ENST00000514665 FBXO6Q9NRD1 293 aaPredicted RBP12.99□□□□□ -0.33
USP53-209ENST00000514665 CHCHD3Q9NX63 227 aaKnown RBP12.99□□□□□ -0.33
USP53-209ENST00000514665 BLOC1S6Q9UL45 172 aa12.99□□□□□ -0.33
USP53-209ENST00000514665 STARD13Q9Y3M8 1113 aa12.99□□□□□ -0.33
USP53-209ENST00000514665 ROBO3Q96MS0 1386 aa12.99□□□□□ -0.33
USP53-209ENST00000514665 C2orf81A6NN90 581 aa12.99□□□□□ -0.33
USP53-209ENST00000514665 NCAM2O15394 837 aa12.99□□□□□ -0.33
USP53-209ENST00000514665 ASS1P00966 412 aaKnown RBP12.99□□□□□ -0.33
USP53-209ENST00000514665 RBP1P09455 135 aa12.99□□□□□ -0.33
USP53-209ENST00000514665 USP17L7P0C7H9 530 aa12.99□□□□□ -0.33
USP53-209ENST00000514665 PSMB4P28070 264 aa12.99□□□□□ -0.33
USP53-209ENST00000514665 FKBP1AP62942 108 aaKnown RBP12.99□□□□□ -0.33
USP53-209ENST00000514665 PRKAA1Q13131 559 aa12.99□□□□□ -0.33
USP53-209ENST00000514665 NFYCQ13952 458 aa12.99□□□□□ -0.33
USP53-209ENST00000514665 ACAP1Q15027 740 aa12.99□□□□□ -0.33
USP53-209ENST00000514665 OVOS1Q6IE37 1185 aa12.99□□□□□ -0.33
USP53-209ENST00000514665 FAM183BPQ6ZVS7 135 aa12.99□□□□□ -0.33
USP53-209ENST00000514665 ADCK2Q7Z695 626 aa12.99□□□□□ -0.33
USP53-209ENST00000514665 RASGEF1CQ8N431 466 aa12.99□□□□□ -0.33
USP53-209ENST00000514665 SAR1AQ9NR31 198 aa12.99□□□□□ -0.33
USP53-209ENST00000514665 VPS26AO75436 327 aa12.98□□□□□ -0.33
USP53-209ENST00000514665 ZMPSTE24O75844 475 aa12.98□□□□□ -0.33
USP53-209ENST00000514665 LGALS2P05162 132 aa12.98□□□□□ -0.33
USP53-209ENST00000514665 PGAM1P18669 254 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms