RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 C1orf220Q5T0J3 134 aa12.11□□□□□ -0.47
COL6A3-213ENST00000493475 FYB2Q5VWT5 728 aa12.11□□□□□ -0.47
COL6A3-213ENST00000493475 KIAA1211LQ6NV74 962 aa12.11□□□□□ -0.47
COL6A3-213ENST00000493475 SCD5Q86SK9 330 aa12.11□□□□□ -0.47
COL6A3-213ENST00000493475 PIP4P1Q86T03 277 aa12.11□□□□□ -0.47
COL6A3-213ENST00000493475 PIGZQ86VD9 579 aa12.11□□□□□ -0.47
COL6A3-213ENST00000493475 TMPRSS6Q8IU80 811 aa12.11□□□□□ -0.47
COL6A3-213ENST00000493475 ZCCHC14Q8WYQ9 949 aaKnown RBP12.11□□□□□ -0.47
COL6A3-213ENST00000493475 TOE1Q96GM8 510 aaKnown RBP12.11□□□□□ -0.47
COL6A3-213ENST00000493475 ACOX2Q99424 681 aa12.11□□□□□ -0.47
COL6A3-213ENST00000493475 DDX50Q9BQ39 737 aaKnown RBP12.11□□□□□ -0.47
COL6A3-213ENST00000493475 MIR1-1HGQ9H1L0 117 aa12.11□□□□□ -0.47
COL6A3-213ENST00000493475 ITM2CQ9NQX7 267 aa12.11□□□□□ -0.47
COL6A3-213ENST00000493475 ABCC13Q9NSE7 274 aa12.11□□□□□ -0.47
COL6A3-213ENST00000493475 ELOVL2Q9NXB9 296 aa12.11□□□□□ -0.47
COL6A3-213ENST00000493475 AGO1Q9UL18 857 aaKnown RBP12.11□□□□□ -0.47
COL6A3-213ENST00000493475 MSRB2Q9Y3D2 182 aa12.11□□□□□ -0.47
COL6A3-213ENST00000493475 SPAARA0A1B0GVQ0 90 aa12.1□□□□□ -0.47
COL6A3-213ENST00000493475 ANTXRLA6NF34 631 aa12.1□□□□□ -0.47
COL6A3-213ENST00000493475 ZNF202O95125 648 aa12.1□□□□□ -0.47
COL6A3-213ENST00000493475 SLC11A2P49281 568 aa12.1□□□□□ -0.47
COL6A3-213ENST00000493475 PGFP49763 221 aa12.1□□□□□ -0.47
COL6A3-213ENST00000493475 ZBTB16Q05516 673 aa12.1□□□□□ -0.47
COL6A3-213ENST00000493475 LRRC63Q05C16 580 aa12.1□□□□□ -0.47
COL6A3-213ENST00000493475 PKP1Q13835 747 aa12.1□□□□□ -0.47
COL6A3-213ENST00000493475 STILQ15468 1287 aa12.1□□□□□ -0.47
COL6A3-213ENST00000493475 TRIP6Q15654 476 aaKnown RBP12.1□□□□□ -0.47
COL6A3-213ENST00000493475 GOLGA7BQ2TAP0 167 aa12.1□□□□□ -0.47
COL6A3-213ENST00000493475 INAVAQ3KP66 663 aa12.1□□□□□ -0.47
COL6A3-213ENST00000493475 TTC31Q49AM3 519 aaPredicted RBP12.1□□□□□ -0.47
COL6A3-213ENST00000493475 FNDC3BQ53EP0 1204 aaKnown RBP12.1□□□□□ -0.47
COL6A3-213ENST00000493475 SLC41A1Q8IVJ1 513 aa12.1□□□□□ -0.47
COL6A3-213ENST00000493475 UNC45BQ8IWX7 931 aa12.1□□□□□ -0.47
COL6A3-213ENST00000493475 AHI1Q8N157 1196 aa12.1□□□□□ -0.47
COL6A3-213ENST00000493475 SLC4A11Q8NBS3 891 aa12.1□□□□□ -0.47
COL6A3-213ENST00000493475 WBP2Q969T9 261 aa12.1□□□□□ -0.47
COL6A3-213ENST00000493475 SKA1Q96BD8 255 aa12.1□□□□□ -0.47
COL6A3-213ENST00000493475 GSDMAQ96QA5 445 aa12.1□□□□□ -0.47
COL6A3-213ENST00000493475 TRIM62Q9BVG3 475 aa12.1□□□□□ -0.47
COL6A3-213ENST00000493475 GPR174Q9BXC1 333 aa12.1□□□□□ -0.47
COL6A3-213ENST00000493475 METTL14Q9HCE5 456 aaKnown RBP12.1□□□□□ -0.47
COL6A3-213ENST00000493475 USP36Q9P275 1121 aaKnown RBP12.1□□□□□ -0.47
COL6A3-213ENST00000493475 ARMCX3Q9UH62 379 aaPredicted RBP12.1□□□□□ -0.47
COL6A3-213ENST00000493475 PLXND1Q9Y4D7 1925 aa12.09□□□□□ -0.47
COL6A3-213ENST00000493475 FAM208BQ5VWN6 2430 aa12.09□□□□□ -0.47
COL6A3-213ENST00000493475 MYH10P35580 1976 aa12.09□□□□□ -0.47
COL6A3-213ENST00000493475 PSMA7O14818 248 aa12.09□□□□□ -0.47
COL6A3-213ENST00000493475 BCAT2O15382 392 aaPredicted RBP12.09□□□□□ -0.47
COL6A3-213ENST00000493475 IRAK2O43187 625 aa12.09□□□□□ -0.47
COL6A3-213ENST00000493475 HYAL3O43820 417 aaPredicted RBP12.09□□□□□ -0.47
COL6A3-213ENST00000493475 RNASEH1O60930 286 aaKnown RBP12.09□□□□□ -0.47
COL6A3-213ENST00000493475 DNTTP04053 509 aa12.09□□□□□ -0.47
COL6A3-213ENST00000493475 VDRP11473 427 aa12.09□□□□□ -0.47
COL6A3-213ENST00000493475 SPINK2P20155 84 aa12.09□□□□□ -0.47
COL6A3-213ENST00000493475 MATKP42679 507 aa12.09□□□□□ -0.47
COL6A3-213ENST00000493475 TPMTP51580 245 aa12.09□□□□□ -0.47
COL6A3-213ENST00000493475 AFF3P51826 1226 aaKnown RBP12.09□□□□□ -0.47
COL6A3-213ENST00000493475 RAD23BP54727 409 aa12.09□□□□□ -0.47
COL6A3-213ENST00000493475 ST8SIA6P61647 398 aa12.09□□□□□ -0.47
COL6A3-213ENST00000493475 GRIK2Q13002 908 aa12.09□□□□□ -0.47
COL6A3-213ENST00000493475 CUL2Q13617 745 aa12.09□□□□□ -0.47
COL6A3-213ENST00000493475 ZNF234Q14588 700 aa12.09□□□□□ -0.47
COL6A3-213ENST00000493475 GEN1Q17RS7 908 aa12.09□□□□□ -0.47
COL6A3-213ENST00000493475 RAB41Q5JT25 222 aa12.09□□□□□ -0.47
COL6A3-213ENST00000493475 NUGGCQ68CJ6 796 aa12.09□□□□□ -0.47
COL6A3-213ENST00000493475 PM20D1Q6GTS8 502 aa12.09□□□□□ -0.47
COL6A3-213ENST00000493475 FMNL3Q8IVF7 1028 aa12.09□□□□□ -0.47
COL6A3-213ENST00000493475 NAXDQ8IW45 347 aa12.09□□□□□ -0.47
COL6A3-213ENST00000493475 DNASE2BQ8WZ79 361 aa12.09□□□□□ -0.47
COL6A3-213ENST00000493475 TMA16Q96EY4 203 aaKnown RBP12.09□□□□□ -0.47
COL6A3-213ENST00000493475 CDC6Q99741 560 aa12.09□□□□□ -0.47
COL6A3-213ENST00000493475 CNGB3Q9NQW8 809 aa12.09□□□□□ -0.47
COL6A3-213ENST00000493475 WSB2Q9NYS7 404 aaPredicted RBP12.09□□□□□ -0.47
COL6A3-213ENST00000493475 TSPAN16Q9UKR8 245 aa12.09□□□□□ -0.47
COL6A3-213ENST00000493475 NCKAP1Q9Y2A7 1128 aa12.09□□□□□ -0.47
COL6A3-213ENST00000493475 SART1O43290 800 aaKnown RBP12.08□□□□□ -0.48
COL6A3-213ENST00000493475 KLKB1P03952 638 aa12.08□□□□□ -0.48
COL6A3-213ENST00000493475 ZNF883P0CG24 379 aa12.08□□□□□ -0.48
COL6A3-213ENST00000493475 IL12RB1P42701 662 aa12.08□□□□□ -0.48
COL6A3-213ENST00000493475 ADIGQ0VDE8 80 aa12.08□□□□□ -0.48
COL6A3-213ENST00000493475 ENPP2Q13822 863 aa12.08□□□□□ -0.48
COL6A3-213ENST00000493475 TRIP4Q15650 581 aaPredicted RBP12.08□□□□□ -0.48
COL6A3-213ENST00000493475 ZCWPW2Q504Y3 356 aa12.08□□□□□ -0.48
COL6A3-213ENST00000493475 ADGRF1Q5T601 910 aa12.08□□□□□ -0.48
COL6A3-213ENST00000493475 ZNF658Q5TYW1 1059 aaPredicted RBP12.08□□□□□ -0.48
COL6A3-213ENST00000493475 DCAF12L1Q5VU92 463 aa12.08□□□□□ -0.48
COL6A3-213ENST00000493475 LRSAM1Q6UWE0 723 aa12.08□□□□□ -0.48
COL6A3-213ENST00000493475 ZCCHC9Q8N567 271 aaKnown RBP12.08□□□□□ -0.48
COL6A3-213ENST00000493475 OR2T3Q8NH03 318 aa12.08□□□□□ -0.48
COL6A3-213ENST00000493475 SETD7Q8WTS6 366 aaKnown RBP12.08□□□□□ -0.48
COL6A3-213ENST00000493475 IRGQQ8WZA9 623 aa12.08□□□□□ -0.48
COL6A3-213ENST00000493475 SNX19Q92543 992 aa12.08□□□□□ -0.48
COL6A3-213ENST00000493475 SMARCE1Q969G3 411 aa12.08□□□□□ -0.48
COL6A3-213ENST00000493475 ERLEC1Q96DZ1 483 aa12.08□□□□□ -0.48
COL6A3-213ENST00000493475 PIWIL1Q96J94 861 aaKnown RBP12.08□□□□□ -0.48
COL6A3-213ENST00000493475 ARID3AQ99856 593 aa12.08□□□□□ -0.48
COL6A3-213ENST00000493475 ULBP1Q9BZM6 244 aa12.08□□□□□ -0.48
COL6A3-213ENST00000493475 LHX5Q9H2C1 402 aa12.08□□□□□ -0.48
COL6A3-213ENST00000493475 CD248Q9HCU0 757 aa12.08□□□□□ -0.48
COL6A3-213ENST00000493475 SUN2Q9UH99 717 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms