RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 P2RY13Q9BPV8 354 aa9.5□□□□□ -0.89
UPF2-202ENST00000357604 PAAF1Q9BRP4 392 aa9.5□□□□□ -0.89
UPF2-202ENST00000357604 MEI4A8MW99 385 aa9.5□□□□□ -0.89
UPF2-202ENST00000357604 H3BQ06 376 aaPredicted RBP9.5□□□□□ -0.89
UPF2-202ENST00000357604 KRIT1O00522 736 aa9.5□□□□□ -0.89
UPF2-202ENST00000357604 SPTLC1O15269 473 aa9.5□□□□□ -0.89
UPF2-202ENST00000357604 PLEKP08567 350 aaPredicted RBP9.5□□□□□ -0.89
UPF2-202ENST00000357604 KCNMA1Q12791 1236 aa9.5□□□□□ -0.89
UPF2-202ENST00000357604 TDGQ13569 410 aa9.5□□□□□ -0.89
UPF2-202ENST00000357604 TEAD4Q15561 434 aa9.5□□□□□ -0.89
UPF2-202ENST00000357604 C11orf63Q6NUN7 778 aa9.5□□□□□ -0.89
UPF2-202ENST00000357604 RSPO2Q6UXX9 243 aaPredicted RBP9.5□□□□□ -0.89
UPF2-202ENST00000357604 XYLT1Q86Y38 959 aa9.5□□□□□ -0.89
UPF2-202ENST00000357604 ZDHHC14Q8IZN3 488 aa9.5□□□□□ -0.89
UPF2-202ENST00000357604 TSPYL1Q9H0U9 437 aa9.5□□□□□ -0.89
UPF2-202ENST00000357604 ASIC3Q9UHC3 531 aa9.5□□□□□ -0.89
UPF2-202ENST00000357604 DNAI1Q9UI46 699 aa9.5□□□□□ -0.89
UPF2-202ENST00000357604 ARHGAP26Q9UNA1 814 aa9.5□□□□□ -0.89
UPF2-202ENST00000357604 HCN4Q9Y3Q4 1203 aa9.5□□□□□ -0.89
UPF2-202ENST00000357604 PGRMC1O00264 195 aaKnown RBP9.5□□□□□ -0.89
UPF2-202ENST00000357604 SOAT2O75908 522 aa9.5□□□□□ -0.89
UPF2-202ENST00000357604 EDN1P05305 212 aa9.5□□□□□ -0.89
UPF2-202ENST00000357604 BMP6P22004 513 aa9.5□□□□□ -0.89
UPF2-202ENST00000357604 PTPN9P43378 593 aa9.5□□□□□ -0.89
UPF2-202ENST00000357604 RAP1GAP2Q684P5 730 aa9.5□□□□□ -0.89
UPF2-202ENST00000357604 SERPINA13PQ6UXR4 307 aa9.5□□□□□ -0.89
UPF2-202ENST00000357604 HS6ST3Q8IZP7 471 aa9.5□□□□□ -0.89
UPF2-202ENST00000357604 BORCS6Q96GS4 357 aa9.5□□□□□ -0.89
UPF2-202ENST00000357604 OMDQ99983 421 aa9.5□□□□□ -0.89
UPF2-202ENST00000357604 POLR2LP62875 67 aaKnown RBP9.49□□□□□ -0.89
UPF2-202ENST00000357604 GDAP1L1Q96MZ0 367 aa9.49□□□□□ -0.89
UPF2-202ENST00000357604 UHRF1Q96T88 793 aaPredicted RBP9.49□□□□□ -0.89
UPF2-202ENST00000357604 C1QTNF1Q9BXJ1 281 aa9.49□□□□□ -0.89
UPF2-202ENST00000357604 SLC2A11Q9BYW1 496 aa9.49□□□□□ -0.89
UPF2-202ENST00000357604 XYLT2Q9H1B5 865 aa9.49□□□□□ -0.89
UPF2-202ENST00000357604 SMOC2Q9H3U7 446 aa9.49□□□□□ -0.89
UPF2-202ENST00000357604 STAU2Q9NUL3 570 aaKnown RBP eCLIP9.49□□□□□ -0.89
UPF2-202ENST00000357604 CACNG4Q9UBN1 327 aa9.49□□□□□ -0.89
UPF2-202ENST00000357604 LIMD1Q9UGP4 676 aa9.49□□□□□ -0.89
UPF2-202ENST00000357604 LAMTOR5O43504 91 aa9.49□□□□□ -0.89
UPF2-202ENST00000357604 GLULP15104 373 aa9.49□□□□□ -0.89
UPF2-202ENST00000357604 DRD1P21728 446 aa9.49□□□□□ -0.89
UPF2-202ENST00000357604 NR2C2P49116 596 aa9.49□□□□□ -0.89
UPF2-202ENST00000357604 ATXN3P54252 364 aaPredicted RBP9.49□□□□□ -0.89
UPF2-202ENST00000357604 WHAMMP3Q1A5X7 153 aa9.49□□□□□ -0.89
UPF2-202ENST00000357604 PARP15Q460N3 678 aa9.49□□□□□ -0.89
UPF2-202ENST00000357604 ZC3H12AQ5D1E8 599 aaKnown RBP9.49□□□□□ -0.89
UPF2-202ENST00000357604 KLHDC10Q6PID8 442 aa9.49□□□□□ -0.89
UPF2-202ENST00000357604 SLC22A17Q8WUG5 538 aa9.49□□□□□ -0.89
UPF2-202ENST00000357604 SLC4A5Q9BY07 1137 aa9.49□□□□□ -0.89
UPF2-202ENST00000357604 GMEB2Q9UKD1 530 aa9.49□□□□□ -0.89
UPF2-202ENST00000357604 SAR1BQ9Y6B6 198 aa9.49□□□□□ -0.89
UPF2-202ENST00000357604 HACD1B0YJ81 288 aa9.49□□□□□ -0.89
UPF2-202ENST00000357604 WEE1P30291 646 aa9.49□□□□□ -0.89
UPF2-202ENST00000357604 BEND5Q7L4P6 421 aa9.49□□□□□ -0.89
UPF2-202ENST00000357604 ZNF571Q7Z3V5 609 aaPredicted RBP9.49□□□□□ -0.89
UPF2-202ENST00000357604 RABEPKQ7Z6M1 372 aa9.49□□□□□ -0.89
UPF2-202ENST00000357604 UBA2Q9UBT2 640 aaPredicted RBP9.49□□□□□ -0.89
UPF2-202ENST00000357604 SORCS3Q9UPU3 1222 aa9.49□□□□□ -0.89
UPF2-202ENST00000357604 NCANO14594 1321 aa9.49□□□□□ -0.89
UPF2-202ENST00000357604 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP9.49□□□□□ -0.89
UPF2-202ENST00000357604 KDM1AO60341 852 aa9.49□□□□□ -0.89
UPF2-202ENST00000357604 PALMO75781 387 aa9.49□□□□□ -0.89
UPF2-202ENST00000357604 ANXA9O76027 345 aa9.49□□□□□ -0.89
UPF2-202ENST00000357604 CEBPBP17676 345 aa9.49□□□□□ -0.89
UPF2-202ENST00000357604 GEMP55040 296 aa9.49□□□□□ -0.89
UPF2-202ENST00000357604 C21orf59P57076 290 aa9.49□□□□□ -0.89
UPF2-202ENST00000357604 KBTBD7Q8WVZ9 684 aa9.49□□□□□ -0.89
UPF2-202ENST00000357604 TSC1Q92574 1164 aa9.49□□□□□ -0.89
UPF2-202ENST00000357604 CAPZA3Q96KX2 299 aa9.49□□□□□ -0.89
UPF2-202ENST00000357604 RCOR3Q9P2K3 495 aaPredicted RBP9.49□□□□□ -0.89
UPF2-202ENST00000357604 NAALADL1Q9UQQ1 740 aa9.49□□□□□ -0.89
UPF2-202ENST00000357604 GPR15P49685 360 aa9.48□□□□□ -0.89
UPF2-202ENST00000357604 FMO1Q01740 532 aa9.48□□□□□ -0.89
UPF2-202ENST00000357604 SGCGQ13326 291 aa9.48□□□□□ -0.89
UPF2-202ENST00000357604 KIAA1324Q6UXG2 1013 aaKnown RBP9.48□□□□□ -0.89
UPF2-202ENST00000357604 ACRBPQ8NEB7 543 aa9.48□□□□□ -0.89
UPF2-202ENST00000357604 OSCP1Q8WVF1 389 aa9.48□□□□□ -0.89
UPF2-202ENST00000357604 TFB1MQ8WVM0 346 aaKnown RBP9.48□□□□□ -0.89
UPF2-202ENST00000357604 TEKT4Q8WW24 435 aa9.48□□□□□ -0.89
UPF2-202ENST00000357604 CCDC68Q9H2F9 335 aa9.48□□□□□ -0.89
UPF2-202ENST00000357604 STN1Q9H668 368 aaKnown RBP9.48□□□□□ -0.89
UPF2-202ENST00000357604 A0A1B0GVM2 712 aa9.48□□□□□ -0.89
UPF2-202ENST00000357604 GRID2IPA4D2P6 1211 aa9.48□□□□□ -0.89
UPF2-202ENST00000357604 TCAF2A6NFQ2 919 aa9.48□□□□□ -0.89
UPF2-202ENST00000357604 CBX4O00257 560 aa9.48□□□□□ -0.89
UPF2-202ENST00000357604 CHADO15335 359 aa9.48□□□□□ -0.89
UPF2-202ENST00000357604 MAP3K7O43318 606 aa9.48□□□□□ -0.89
UPF2-202ENST00000357604 CYP1A1P04798 512 aaPredicted RBP9.48□□□□□ -0.89
UPF2-202ENST00000357604 PCK1P35558 622 aa9.48□□□□□ -0.89
UPF2-202ENST00000357604 HLTFQ14527 1009 aaKnown RBP eCLIP9.48□□□□□ -0.89
UPF2-202ENST00000357604 ADHFE1Q8IWW8 467 aa9.48□□□□□ -0.89
UPF2-202ENST00000357604 FUKQ8N0W3 1084 aa9.48□□□□□ -0.89
UPF2-202ENST00000357604 DQX1Q8TE96 717 aaKnown RBP9.48□□□□□ -0.89
UPF2-202ENST00000357604 DESI2Q9BSY9 194 aa9.48□□□□□ -0.89
UPF2-202ENST00000357604 THAP2Q9H0W7 228 aa9.48□□□□□ -0.89
UPF2-202ENST00000357604 SPATA6Q9NWH7 488 aaPredicted RBP9.48□□□□□ -0.89
UPF2-202ENST00000357604 TPX2Q9ULW0 747 aaKnown RBP9.48□□□□□ -0.89
UPF2-202ENST00000357604 FAM170AA1A519 330 aa9.48□□□□□ -0.89
UPF2-202ENST00000357604 ECEL1O95672 775 aa9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms