RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 KRT17Q04695 432 aa5.9□□□□□ -1.47
SCN1A-216ENST00000637968 ZNF33BQ06732 778 aa5.9□□□□□ -1.47
SCN1A-216ENST00000637968 ZNF267Q14586 743 aaPredicted RBP5.9□□□□□ -1.47
SCN1A-216ENST00000637968 EARS2Q5JPH6 523 aaKnown RBP5.9□□□□□ -1.47
SCN1A-216ENST00000637968 SLX4IPQ5VYV7 408 aa5.9□□□□□ -1.47
SCN1A-216ENST00000637968 PLEKHG7Q6ZR37 379 aa5.9□□□□□ -1.47
SCN1A-216ENST00000637968 SYDE1Q6ZW31 735 aaPredicted RBP5.9□□□□□ -1.47
SCN1A-216ENST00000637968 NEK8Q86SG6 692 aa5.9□□□□□ -1.47
SCN1A-216ENST00000637968 ARID3BQ8IVW6 561 aaPredicted RBP5.9□□□□□ -1.47
SCN1A-216ENST00000637968 FBXW8Q8N3Y1 598 aa5.9□□□□□ -1.47
SCN1A-216ENST00000637968 CYGBQ8WWM9 190 aa5.9□□□□□ -1.47
SCN1A-216ENST00000637968 SPOCK2Q92563 424 aa5.9□□□□□ -1.47
SCN1A-216ENST00000637968 DLG3Q92796 817 aa5.9□□□□□ -1.47
SCN1A-216ENST00000637968 CCDC120Q96HB5 630 aa5.9□□□□□ -1.47
SCN1A-216ENST00000637968 SNX18Q96RF0 628 aa5.9□□□□□ -1.47
SCN1A-216ENST00000637968 MED15Q96RN5 788 aa5.9□□□□□ -1.47
SCN1A-216ENST00000637968 MNTQ99583 582 aa5.9□□□□□ -1.47
SCN1A-216ENST00000637968 MLPHQ9BV36 600 aaPredicted RBP5.9□□□□□ -1.47
SCN1A-216ENST00000637968 TMEM168Q9H0V1 697 aa5.9□□□□□ -1.47
SCN1A-216ENST00000637968 TRMT6Q9UJA5 497 aaKnown RBP5.9□□□□□ -1.47
SCN1A-216ENST00000637968 SORCS3Q9UPU3 1222 aa5.9□□□□□ -1.47
SCN1A-216ENST00000637968 ARHGEF5Q12774 1597 aa5.9□□□□□ -1.47
SCN1A-216ENST00000637968 PI4KAP2A4QPH2 592 aa5.9□□□□□ -1.47
SCN1A-216ENST00000637968 PLK4O00444 970 aa5.9□□□□□ -1.47
SCN1A-216ENST00000637968 TRDMT1O14717 391 aaKnown RBP5.9□□□□□ -1.47
SCN1A-216ENST00000637968 KPNA5O15131 536 aa5.9□□□□□ -1.47
SCN1A-216ENST00000637968 TM9SF1O15321 606 aa5.9□□□□□ -1.47
SCN1A-216ENST00000637968 PSTPIP1O43586 416 aa5.9□□□□□ -1.47
SCN1A-216ENST00000637968 RFPL2O75678 378 aa5.9□□□□□ -1.47
SCN1A-216ENST00000637968 NELFEP18615 380 aaKnown RBP5.9□□□□□ -1.47
SCN1A-216ENST00000637968 ZNF76P36508 570 aa5.9□□□□□ -1.47
SCN1A-216ENST00000637968 SLC25A3Q00325 362 aa5.9□□□□□ -1.47
SCN1A-216ENST00000637968 UBE3AQ05086 875 aa5.9□□□□□ -1.47
SCN1A-216ENST00000637968 PTGDRQ13258 359 aa5.9□□□□□ -1.47
SCN1A-216ENST00000637968 SEMA3AQ14563 771 aa5.9□□□□□ -1.47
SCN1A-216ENST00000637968 NRF1Q16656 503 aa5.9□□□□□ -1.47
SCN1A-216ENST00000637968 LSM12Q3MHD2 195 aaKnown RBP5.9□□□□□ -1.47
SCN1A-216ENST00000637968 ZNF677Q86XU0 584 aa5.9□□□□□ -1.47
SCN1A-216ENST00000637968 CADM2Q8N3J6 435 aa5.9□□□□□ -1.47
SCN1A-216ENST00000637968 FBXL16Q8N461 479 aa5.9□□□□□ -1.47
SCN1A-216ENST00000637968 PI4KAP1Q8N8J0 262 aa5.9□□□□□ -1.47
SCN1A-216ENST00000637968 TTLQ8NG68 377 aa5.9□□□□□ -1.47
SCN1A-216ENST00000637968 TEX47Q8TBZ9 253 aa5.9□□□□□ -1.47
SCN1A-216ENST00000637968 TBC1D15Q8TC07 691 aa5.9□□□□□ -1.47
SCN1A-216ENST00000637968 PTCD3Q96EY7 689 aaKnown RBP5.9□□□□□ -1.47
SCN1A-216ENST00000637968 GAL3ST1Q99999 423 aa5.9□□□□□ -1.47
SCN1A-216ENST00000637968 SENP7Q9BQF6 1050 aa5.9□□□□□ -1.47
SCN1A-216ENST00000637968 METTL22Q9BUU2 404 aaPredicted RBP5.9□□□□□ -1.47
SCN1A-216ENST00000637968 REXO4Q9GZR2 422 aaKnown RBP5.9□□□□□ -1.47
SCN1A-216ENST00000637968 POLMQ9NP87 494 aaPredicted RBP5.9□□□□□ -1.47
SCN1A-216ENST00000637968 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP5.9□□□□□ -1.47
SCN1A-216ENST00000637968 COQ3Q9NZJ6 369 aa5.9□□□□□ -1.47
SCN1A-216ENST00000637968 DENND2AQ9ULE3 1009 aa5.9□□□□□ -1.47
SCN1A-216ENST00000637968 ARAP3Q8WWN8 1544 aa5.9□□□□□ -1.47
SCN1A-216ENST00000637968 MYOCOSA0A1B0GUC4 107 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 CLRN2A0PK11 232 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 SAGE2PA6NJ88 616 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 COPEO14579 308 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 HOXC11O43248 304 aaPredicted RBP5.89□□□□□ -1.47
SCN1A-216ENST00000637968 TSC22D2O75157 780 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 INHBAP08476 426 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 CD53P19397 219 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 NMT1P30419 496 aaKnown RBP5.89□□□□□ -1.47
SCN1A-216ENST00000637968 AP2S1P53680 142 aaPredicted RBP5.89□□□□□ -1.47
SCN1A-216ENST00000637968 OXA1LQ15070 435 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 PLA2G4EQ3MJ16 856 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 KLHL12Q53G59 568 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 ZBTB49Q6ZSB9 765 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 BEND5Q7L4P6 421 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 RNF135Q8IUD6 432 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 TDRD5Q8NAT2 981 aaKnown RBP5.89□□□□□ -1.47
SCN1A-216ENST00000637968 SLAIN1Q8ND83 568 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 ENKURQ8TC29 256 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 RAB2BQ8WUD1 216 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 PROX1Q92786 737 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 NCLNQ969V3 563 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 RBM14Q96PK6 669 aaKnown RBP5.89□□□□□ -1.47
SCN1A-216ENST00000637968 NUDT12Q9BQG2 462 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 CLPBQ9H078 707 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 ABCG4Q9H172 646 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 MAGEF1Q9HAY2 307 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 ZNF219Q9P2Y4 722 aaPredicted RBP5.89□□□□□ -1.47
SCN1A-216ENST00000637968 MBD2Q9UBB5 411 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 GMEB2Q9UKD1 530 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 ABCC1P33527 1531 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 CDC42BPAQ5VT25 1732 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 RIMBP3CA6NJZ7 1639 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 RIMBP3BA6NNM3 1639 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 RIMBP3Q9UFD9 1639 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 FRMPD4Q14CM0 1322 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 BTN3A3O00478 584 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 NFIBO00712 420 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 PLD2O14939 933 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 MSI1O43347 362 aaKnown RBP5.89□□□□□ -1.47
SCN1A-216ENST00000637968 DNAJB5O75953 348 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 PROCP04070 461 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 PSKH1P11801 424 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 GARTP22102 1010 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 SLC26A2P50443 739 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 PRKAA2P54646 552 aa5.89□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms