RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 GZMAP12544 262 aa11.69□□□□□ -0.54
CLIP1-219ENST00000620786 CDH8P55286 799 aa11.69□□□□□ -0.54
CLIP1-219ENST00000620786 NME5P56597 212 aa11.69□□□□□ -0.54
CLIP1-219ENST00000620786 BOP1Q14137 746 aaKnown RBP11.69□□□□□ -0.54
CLIP1-219ENST00000620786 POU6F1Q14863 301 aa11.69□□□□□ -0.54
CLIP1-219ENST00000620786 NFIL3Q16649 462 aa11.69□□□□□ -0.54
CLIP1-219ENST00000620786 ARHGEF19Q8IW93 802 aa11.69□□□□□ -0.54
CLIP1-219ENST00000620786 BRSK2Q8IWQ3 736 aa11.69□□□□□ -0.54
CLIP1-219ENST00000620786 SCUBE3Q8IX30 993 aa11.69□□□□□ -0.54
CLIP1-219ENST00000620786 FTHL17Q9BXU8 183 aa11.69□□□□□ -0.54
CLIP1-219ENST00000620786 CYP39A1Q9NYL5 469 aa11.69□□□□□ -0.54
CLIP1-219ENST00000620786 ZMYM2Q9UBW7 1377 aa11.69□□□□□ -0.54
CLIP1-219ENST00000620786 SF3B1O75533 1304 aaKnown RBP eCLIP11.68□□□□□ -0.548e-7■■■■■ 170.2
CLIP1-219ENST00000620786 SLC9A3R1O14745 358 aaPredicted RBP11.68□□□□□ -0.54
CLIP1-219ENST00000620786 OR56A5P0C7T3 313 aa11.68□□□□□ -0.54
CLIP1-219ENST00000620786 UBE3AQ05086 875 aa11.68□□□□□ -0.54
CLIP1-219ENST00000620786 SETMARQ53H47 684 aaPredicted RBP11.68□□□□□ -0.54
CLIP1-219ENST00000620786 NOMO2Q5JPE7 1267 aa11.68□□□□□ -0.54
CLIP1-219ENST00000620786 CCDC60Q8IWA6 550 aaPredicted RBP11.68□□□□□ -0.54
CLIP1-219ENST00000620786 MRPS23Q9Y3D9 190 aaKnown RBP11.68□□□□□ -0.54
CLIP1-219ENST00000620786 ALDH9A1P49189 494 aa11.68□□□□□ -0.54
CLIP1-219ENST00000620786 SLC45A4Q5BKX6 768 aa11.68□□□□□ -0.54
CLIP1-219ENST00000620786 DEFB106AQ8N104 65 aa11.68□□□□□ -0.54
CLIP1-219ENST00000620786 EXD1Q8NHP7 514 aa11.68□□□□□ -0.54
CLIP1-219ENST00000620786 CXorf40AQ8TE69 158 aa11.68□□□□□ -0.54
CLIP1-219ENST00000620786 EME1Q96AY2 570 aa11.68□□□□□ -0.54
CLIP1-219ENST00000620786 THTPAQ9BU02 230 aa11.68□□□□□ -0.54
CLIP1-219ENST00000620786 EPN3Q9H201 632 aa11.68□□□□□ -0.54
CLIP1-219ENST00000620786 KCNF1Q9H3M0 494 aa11.68□□□□□ -0.54
CLIP1-219ENST00000620786 UBA2Q9UBT2 640 aaPredicted RBP11.68□□□□□ -0.54
CLIP1-219ENST00000620786 PHF20L1A8MW92 1017 aa11.68□□□□□ -0.54
CLIP1-219ENST00000620786 FKBP1BP68106 108 aa11.68□□□□□ -0.54
CLIP1-219ENST00000620786 C1QBPQ07021 282 aaKnown RBP11.68□□□□□ -0.54
CLIP1-219ENST00000620786 SLC29A2Q14542 456 aa11.68□□□□□ -0.54
CLIP1-219ENST00000620786 PLEKHM3Q6ZWE6 761 aa11.68□□□□□ -0.54
CLIP1-219ENST00000620786 SYTL1Q8IYJ3 562 aa11.68□□□□□ -0.54
CLIP1-219ENST00000620786 CENPLQ8N0S6 344 aaPredicted RBP11.68□□□□□ -0.54
CLIP1-219ENST00000620786 DTX3LQ8TDB6 740 aa11.68□□□□□ -0.54
CLIP1-219ENST00000620786 SPACA7Q96KW9 195 aa11.68□□□□□ -0.54
CLIP1-219ENST00000620786 ELOVL6Q9H5J4 265 aa11.68□□□□□ -0.54
CLIP1-219ENST00000620786 MIEF1Q9NQG6 463 aa11.68□□□□□ -0.54
CLIP1-219ENST00000620786 ABCC13Q9NSE7 274 aa11.68□□□□□ -0.54
CLIP1-219ENST00000620786 A0A0A6YYK5 440 aaPredicted RBP11.68□□□□□ -0.54
CLIP1-219ENST00000620786 C16orf96A6NNT2 1141 aa11.68□□□□□ -0.54
CLIP1-219ENST00000620786 RASSF9O75901 435 aa11.68□□□□□ -0.54
CLIP1-219ENST00000620786 LRRC8BQ6P9F7 803 aa11.68□□□□□ -0.54
CLIP1-219ENST00000620786 FRMPD4Q14CM0 1322 aa11.68□□□□□ -0.54
CLIP1-219ENST00000620786 TCF3P15923 654 aa11.68□□□□□ -0.54
CLIP1-219ENST00000620786 MAPK7Q13164 816 aa11.68□□□□□ -0.54
CLIP1-219ENST00000620786 C11orf63Q6NUN7 778 aa11.68□□□□□ -0.54
CLIP1-219ENST00000620786 TTI2Q6NXR4 508 aa11.68□□□□□ -0.54
CLIP1-219ENST00000620786 PRR23CQ6ZRP0 262 aa11.68□□□□□ -0.54
CLIP1-219ENST00000620786 PARP9Q8IXQ6 854 aa11.68□□□□□ -0.54
CLIP1-219ENST00000620786 IL17RAQ96F46 866 aa11.68□□□□□ -0.54
CLIP1-219ENST00000620786 ACOX2Q99424 681 aa11.68□□□□□ -0.54
CLIP1-219ENST00000620786 O00370 1275 aa11.67□□□□□ -0.54
CLIP1-219ENST00000620786 RPN2P04844 631 aa11.67□□□□□ -0.54
CLIP1-219ENST00000620786 TPH1P17752 444 aa11.67□□□□□ -0.54
CLIP1-219ENST00000620786 THOP1P52888 689 aa11.67□□□□□ -0.54
CLIP1-219ENST00000620786 MCL1Q07820 350 aa11.67□□□□□ -0.54
CLIP1-219ENST00000620786 ZBTB17Q13105 803 aa11.67□□□□□ -0.54
CLIP1-219ENST00000620786 ZNF268Q14587 947 aaPredicted RBP11.67□□□□□ -0.54
CLIP1-219ENST00000620786 NAA30Q147X3 362 aaPredicted RBP11.67□□□□□ -0.54
CLIP1-219ENST00000620786 KBTBD12Q3ZCT8 623 aa11.67□□□□□ -0.54
CLIP1-219ENST00000620786 ALFQ53S48 1182 aa11.67□□□□□ -0.54
CLIP1-219ENST00000620786 DEPDC1Q5TB30 811 aa11.67□□□□□ -0.54
CLIP1-219ENST00000620786 HLA-DQA1Q5Y7H0 255 aa11.67□□□□□ -0.54
CLIP1-219ENST00000620786 RBM23Q86U06 439 aaKnown RBP11.67□□□□□ -0.54
CLIP1-219ENST00000620786 TBL1YQ9BQ87 522 aa11.67□□□□□ -0.54
CLIP1-219ENST00000620786 TKTL2Q9H0I9 626 aa11.67□□□□□ -0.54
CLIP1-219ENST00000620786 NUDT5Q9UKK9 219 aa11.67□□□□□ -0.54
CLIP1-219ENST00000620786 GTF2A1LQ9UNN4 478 aa11.67□□□□□ -0.54
CLIP1-219ENST00000620786 FAM50BQ9Y247 325 aa11.67□□□□□ -0.54
CLIP1-219ENST00000620786 KRT8P05787 483 aa11.67□□□□□ -0.54
CLIP1-219ENST00000620786 RBP1P09455 135 aa11.67□□□□□ -0.54
CLIP1-219ENST00000620786 ATP5C1P36542 298 aaKnown RBP11.67□□□□□ -0.54
CLIP1-219ENST00000620786 LRRC36Q1X8D7 754 aa11.67□□□□□ -0.54
CLIP1-219ENST00000620786 ZNF557Q8N988 423 aaPredicted RBP11.67□□□□□ -0.54
CLIP1-219ENST00000620786 ZNF473Q8WTR7 871 aaKnown RBP11.67□□□□□ -0.54
CLIP1-219ENST00000620786 OSCP1Q8WVF1 389 aa11.67□□□□□ -0.54
CLIP1-219ENST00000620786 GAS2L1Q99501 681 aaPredicted RBP11.67□□□□□ -0.54
CLIP1-219ENST00000620786 POPDC2Q9HBU9 364 aa11.67□□□□□ -0.54
CLIP1-219ENST00000620786 SNX8Q9Y5X2 465 aa11.67□□□□□ -0.54
CLIP1-219ENST00000620786 PAEPP09466 180 aa11.67□□□□□ -0.54
CLIP1-219ENST00000620786 GTF2E2P29084 291 aaKnown RBP11.67□□□□□ -0.54
CLIP1-219ENST00000620786 SLC6A3Q01959 620 aa11.67□□□□□ -0.54
CLIP1-219ENST00000620786 LRRC6Q86X45 466 aa11.67□□□□□ -0.54
CLIP1-219ENST00000620786 MCOLN2Q8IZK6 566 aa11.67□□□□□ -0.54
CLIP1-219ENST00000620786 KCNB2Q92953 911 aa11.67□□□□□ -0.54
CLIP1-219ENST00000620786 LPPQ93052 612 aa11.67□□□□□ -0.54
CLIP1-219ENST00000620786 MIR1-1HGQ9H1L0 117 aa11.67□□□□□ -0.54
CLIP1-219ENST00000620786 ACTR8Q9H981 624 aa11.67□□□□□ -0.54
CLIP1-219ENST00000620786 LOC100653049A0A140TA62 436 aa11.67□□□□□ -0.54
CLIP1-219ENST00000620786 ERI2A8K979 691 aaKnown RBP11.67□□□□□ -0.54
CLIP1-219ENST00000620786 PPP1R37O75864 691 aa11.67□□□□□ -0.54
CLIP1-219ENST00000620786 CYP7B1O75881 506 aa11.67□□□□□ -0.54
CLIP1-219ENST00000620786 KRT34O76011 436 aa11.67□□□□□ -0.54
CLIP1-219ENST00000620786 PSMA3P25788 255 aa11.67□□□□□ -0.54
CLIP1-219ENST00000620786 POLR2LP62875 67 aaKnown RBP11.67□□□□□ -0.54
CLIP1-219ENST00000620786 DMTNQ08495 405 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 68.6 ms