RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 WBP2Q969T9 261 aa20.17■□□□□ 0.82
UPF1-212ENST00000601689 NUP58Q9BVL2 599 aa20.17■□□□□ 0.82
UPF1-212ENST00000601689 IRX2Q9BZI1 471 aaPredicted RBP20.17■□□□□ 0.82
UPF1-212ENST00000601689 RRN3Q9NYV6 651 aa20.17■□□□□ 0.82
UPF1-212ENST00000601689 MYO6Q9UM54 1294 aa20.17■□□□□ 0.82
UPF1-212ENST00000601689 NAALADL1Q9UQQ1 740 aa20.17■□□□□ 0.82
UPF1-212ENST00000601689 A0A1B0GTH6 734 aa20.16■□□□□ 0.82
UPF1-212ENST00000601689 CHURC1-FNTBB4DL54 471 aa20.16■□□□□ 0.82
UPF1-212ENST00000601689 GREM1O60565 184 aa20.16■□□□□ 0.82
UPF1-212ENST00000601689 MMEP08473 750 aa20.16■□□□□ 0.82
UPF1-212ENST00000601689 DGKGP49619 791 aa20.16■□□□□ 0.82
UPF1-212ENST00000601689 ARID5AQ03989 594 aa20.16■□□□□ 0.82
UPF1-212ENST00000601689 ADGRF1Q5T601 910 aa20.16■□□□□ 0.82
UPF1-212ENST00000601689 ZNF557Q8N988 423 aaPredicted RBP20.16■□□□□ 0.82
UPF1-212ENST00000601689 RPLP0P6Q8NHW5 317 aa20.16■□□□□ 0.82
UPF1-212ENST00000601689 KCNV2Q8TDN2 545 aa20.16■□□□□ 0.82
UPF1-212ENST00000601689 DQX1Q8TE96 717 aaKnown RBP20.16■□□□□ 0.82
UPF1-212ENST00000601689 RNF34Q969K3 372 aa20.16■□□□□ 0.82
UPF1-212ENST00000601689 AZIN2Q96A70 460 aa20.16■□□□□ 0.82
UPF1-212ENST00000601689 FAM204AQ9H8W3 233 aa20.16■□□□□ 0.82
UPF1-212ENST00000601689 FBRSL1Q9HCM7 1045 aaKnown RBP20.16■□□□□ 0.82
UPF1-212ENST00000601689 PRMT8Q9NR22 394 aaPredicted RBP20.16■□□□□ 0.82
UPF1-212ENST00000601689 SEPT11Q9NVA2 429 aaKnown RBP20.16■□□□□ 0.82
UPF1-212ENST00000601689 ZSCAN32Q9NX65 697 aa20.16■□□□□ 0.82
UPF1-212ENST00000601689 STAP1Q9ULZ2 295 aa20.16■□□□□ 0.82
UPF1-212ENST00000601689 IRAK2O43187 625 aa20.15■□□□□ 0.82
UPF1-212ENST00000601689 TEX33O43247 280 aa20.15■□□□□ 0.82
UPF1-212ENST00000601689 MSI1O43347 362 aaKnown RBP20.15■□□□□ 0.82
UPF1-212ENST00000601689 CACNG3O60359 315 aa20.15■□□□□ 0.82
UPF1-212ENST00000601689 TULP3O75386 442 aa20.15■□□□□ 0.82
UPF1-212ENST00000601689 KLKB1P03952 638 aa20.15■□□□□ 0.82
UPF1-212ENST00000601689 SLC6A11P48066 632 aa20.15■□□□□ 0.82
UPF1-212ENST00000601689 FANCCQ00597 558 aa20.15■□□□□ 0.82
UPF1-212ENST00000601689 KDSRQ06136 332 aa20.15■□□□□ 0.82
UPF1-212ENST00000601689 NFKBIBQ15653 356 aa20.15■□□□□ 0.82
UPF1-212ENST00000601689 PTPN20Q4JDL3 420 aa20.15■□□□□ 0.82
UPF1-212ENST00000601689 PPP1R2P3Q6NXS1 205 aa20.15■□□□□ 0.82
UPF1-212ENST00000601689 Q6ZS52 159 aa20.15■□□□□ 0.82
UPF1-212ENST00000601689 FAM183BPQ6ZVS7 135 aa20.15■□□□□ 0.82
UPF1-212ENST00000601689 SND1Q7KZF4 910 aaKnown RBP eCLIP20.15■□□□□ 0.82
UPF1-212ENST00000601689 ZNF397Q8NF99 534 aaPredicted RBP20.15■□□□□ 0.82
UPF1-212ENST00000601689 DDX1Q92499 740 aaKnown RBP20.15■□□□□ 0.82
UPF1-212ENST00000601689 IQCDQ96DY2 449 aa20.15■□□□□ 0.82
UPF1-212ENST00000601689 TMA16Q96EY4 203 aaKnown RBP20.15■□□□□ 0.82
UPF1-212ENST00000601689 TSPY26PQ9H489 355 aa20.15■□□□□ 0.82
UPF1-212ENST00000601689 SLTMQ9NWH9 1034 aaKnown RBP eCLIP20.15■□□□□ 0.82
UPF1-212ENST00000601689 PAXBP1Q9Y5B6 917 aa20.15■□□□□ 0.82
UPF1-212ENST00000601689 PCDHGA2Q9Y5H1 932 aa20.15■□□□□ 0.82
UPF1-212ENST00000601689 EPHB6O15197 1021 aa20.14■□□□□ 0.81
UPF1-212ENST00000601689 ZBTB24O43167 697 aaPredicted RBP20.14■□□□□ 0.81
UPF1-212ENST00000601689 PAPSS2O95340 614 aaPredicted RBP20.14■□□□□ 0.81
UPF1-212ENST00000601689 TRUB2O95900 331 aaKnown RBP20.14■□□□□ 0.81
UPF1-212ENST00000601689 ERBB2P04626 1255 aa20.14■□□□□ 0.81
UPF1-212ENST00000601689 NOS2P35228 1153 aa20.14■□□□□ 0.81
UPF1-212ENST00000601689 SCNN1AP37088 669 aa20.14■□□□□ 0.81
UPF1-212ENST00000601689 NSFP46459 744 aaKnown RBP20.14■□□□□ 0.81
UPF1-212ENST00000601689 SEC13P55735 322 aa20.14■□□□□ 0.81
UPF1-212ENST00000601689 GAB4Q2WGN9 574 aa20.14■□□□□ 0.81
UPF1-212ENST00000601689 NAA35Q5VZE5 725 aa20.14■□□□□ 0.81
UPF1-212ENST00000601689 SDE2Q6IQ49 451 aa20.14■□□□□ 0.81
UPF1-212ENST00000601689 SLC26A9Q7LBE3 791 aa20.14■□□□□ 0.81
UPF1-212ENST00000601689 ETFBKMTQ8IXQ9 262 aa20.14■□□□□ 0.81
UPF1-212ENST00000601689 DEFB106AQ8N104 65 aa20.14■□□□□ 0.81
UPF1-212ENST00000601689 CAMKK1Q8N5S9 505 aa20.14■□□□□ 0.81
UPF1-212ENST00000601689 ATP6V0D2Q8N8Y2 350 aa20.14■□□□□ 0.81
UPF1-212ENST00000601689 TERB1Q8NA31 727 aa20.14■□□□□ 0.81
UPF1-212ENST00000601689 UCMAQ8WVF2 138 aa20.14■□□□□ 0.81
UPF1-212ENST00000601689 BHMTQ93088 406 aa20.14■□□□□ 0.81
UPF1-212ENST00000601689 SLC2A11Q9BYW1 496 aa20.14■□□□□ 0.81
UPF1-212ENST00000601689 EDEM3Q9BZQ6 932 aa20.14■□□□□ 0.81
UPF1-212ENST00000601689 FAM86C1Q9NVL1 165 aa20.14■□□□□ 0.81
UPF1-212ENST00000601689 TJP2Q9UDY2 1190 aa20.14■□□□□ 0.81
UPF1-212ENST00000601689 A0A0A0MRY4 1105 aa20.13■□□□□ 0.81
UPF1-212ENST00000601689 ACSL4O60488 711 aa20.13■□□□□ 0.81
UPF1-212ENST00000601689 ABCB4P21439 1286 aa20.13■□□□□ 0.81
UPF1-212ENST00000601689 NBL1P41271 181 aa20.13■□□□□ 0.81
UPF1-212ENST00000601689 GABRB2P47870 512 aa20.13■□□□□ 0.81
UPF1-212ENST00000601689 RNASE9P60153 205 aaKnown RBP20.13■□□□□ 0.81
UPF1-212ENST00000601689 SATB1Q01826 763 aa20.13■□□□□ 0.81
UPF1-212ENST00000601689 GAS6Q14393 721 aa20.13■□□□□ 0.81
UPF1-212ENST00000601689 NR1I3Q14994 352 aa20.13■□□□□ 0.81
UPF1-212ENST00000601689 C2orf27AQ580R0 203 aa20.13■□□□□ 0.81
UPF1-212ENST00000601689 EOGTQ5NDL2 527 aa20.13■□□□□ 0.81
UPF1-212ENST00000601689 FAM102AQ5T9C2 384 aaPredicted RBP20.13■□□□□ 0.81
UPF1-212ENST00000601689 LRSAM1Q6UWE0 723 aa20.13■□□□□ 0.81
UPF1-212ENST00000601689 OLFML1Q6UWY5 402 aa20.13■□□□□ 0.81
UPF1-212ENST00000601689 SYT13Q7L8C5 426 aa20.13■□□□□ 0.81
UPF1-212ENST00000601689 TAC4Q86UU9 113 aa20.13■□□□□ 0.81
UPF1-212ENST00000601689 C12orf40Q86WS4 652 aa20.13■□□□□ 0.81
UPF1-212ENST00000601689 CPA5Q8WXQ8 436 aa20.13■□□□□ 0.81
UPF1-212ENST00000601689 NKD2Q969F2 451 aaPredicted RBP20.13■□□□□ 0.81
UPF1-212ENST00000601689 NUCKS1Q9H1E3 243 aaKnown RBP20.13■□□□□ 0.81
UPF1-212ENST00000601689 PLK2Q9NYY3 685 aa20.13■□□□□ 0.81
UPF1-212ENST00000601689 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP20.13■□□□□ 0.81
UPF1-212ENST00000601689 NOCTQ9UK39 431 aaKnown RBP20.13■□□□□ 0.81
UPF1-212ENST00000601689 K7EQS6 105 aa20.12■□□□□ 0.81
UPF1-212ENST00000601689 CBFA2T2O43439 604 aa20.12■□□□□ 0.81
UPF1-212ENST00000601689 DAB1O75553 588 aa20.12■□□□□ 0.81
UPF1-212ENST00000601689 GRAP2O75791 330 aa20.12■□□□□ 0.81
UPF1-212ENST00000601689 ALDH1A2O94788 518 aa20.12■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms