RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 KCNK3O14649 394 aa10.65□□□□□ -0.7
TRIM28-210ENST00000597618 ENC1O14682 589 aa10.65□□□□□ -0.7
TRIM28-210ENST00000597618 MDM4O15151 490 aa10.65□□□□□ -0.7
TRIM28-210ENST00000597618 PHACTR2O75167 634 aa10.65□□□□□ -0.7
TRIM28-210ENST00000597618 STC2O76061 302 aa10.65□□□□□ -0.7
TRIM28-210ENST00000597618 BEST1O76090 585 aa10.65□□□□□ -0.7
TRIM28-210ENST00000597618 SEMA4FO95754 770 aa10.65□□□□□ -0.7
TRIM28-210ENST00000597618 CYBBP04839 570 aa10.65□□□□□ -0.7
TRIM28-210ENST00000597618 FAM200BP0CF97 657 aa10.65□□□□□ -0.7
TRIM28-210ENST00000597618 CCDC130P13994 396 aa10.65□□□□□ -0.7
TRIM28-210ENST00000597618 ACSL1P33121 698 aa10.65□□□□□ -0.7
TRIM28-210ENST00000597618 STAT6P42226 847 aa10.65□□□□□ -0.7
TRIM28-210ENST00000597618 BCAT1P54687 386 aa10.65□□□□□ -0.7
TRIM28-210ENST00000597618 C21orf59P57076 290 aa10.65□□□□□ -0.7
TRIM28-210ENST00000597618 IL9RQ01113 521 aa10.65□□□□□ -0.7
TRIM28-210ENST00000597618 CFHR1Q03591 330 aa10.65□□□□□ -0.7
TRIM28-210ENST00000597618 RTP5Q14D33 572 aa10.65□□□□□ -0.7
TRIM28-210ENST00000597618 ZNF699Q32M78 642 aa10.65□□□□□ -0.7
TRIM28-210ENST00000597618 ZNF667Q5HYK9 610 aa10.65□□□□□ -0.7
TRIM28-210ENST00000597618 C10orf120Q5SQS8 335 aa10.65□□□□□ -0.7
TRIM28-210ENST00000597618 LAYNQ6UX15 382 aa10.65□□□□□ -0.7
TRIM28-210ENST00000597618 SCARA5Q6ZMJ2 495 aa10.65□□□□□ -0.7
TRIM28-210ENST00000597618 ACOT1Q86TX2 421 aa10.65□□□□□ -0.7
TRIM28-210ENST00000597618 RDH13Q8NBN7 331 aa10.65□□□□□ -0.7
TRIM28-210ENST00000597618 BIRC7Q96CA5 298 aa10.65□□□□□ -0.7
TRIM28-210ENST00000597618 P2RY11Q96G91 374 aa10.65□□□□□ -0.7
TRIM28-210ENST00000597618 CDK5RAP1Q96SZ6 601 aaKnown RBP10.65□□□□□ -0.7
TRIM28-210ENST00000597618 ACE2Q9BYF1 805 aaPredicted RBP10.65□□□□□ -0.7
TRIM28-210ENST00000597618 DCLK3Q9C098 648 aa10.65□□□□□ -0.7
TRIM28-210ENST00000597618 BTBD1Q9H0C5 482 aa10.65□□□□□ -0.7
TRIM28-210ENST00000597618 FBRSQ9HAH7 460 aa10.65□□□□□ -0.7
TRIM28-210ENST00000597618 AGPAT3Q9NRZ7 376 aa10.65□□□□□ -0.7
TRIM28-210ENST00000597618 MTPAPQ9NVV4 582 aaKnown RBP eCLIP10.65□□□□□ -0.7
TRIM28-210ENST00000597618 PCDHA5Q9Y5H7 936 aa10.65□□□□□ -0.7
TRIM28-210ENST00000597618 MUC22E2RYF6 1773 aaPredicted RBP10.65□□□□□ -0.71
TRIM28-210ENST00000597618 A0A1B0GTQ1 180 aa10.64□□□□□ -0.71
TRIM28-210ENST00000597618 A0A1W2PQH9 124 aa10.64□□□□□ -0.71
TRIM28-210ENST00000597618 ERVH48-1M5A8F1 160 aa10.64□□□□□ -0.71
TRIM28-210ENST00000597618 EIF3DO15371 548 aaKnown RBP eCLIP10.64□□□□□ -0.71
TRIM28-210ENST00000597618 TIMM44O43615 452 aa10.64□□□□□ -0.71
TRIM28-210ENST00000597618 TSPAN3O60637 253 aa10.64□□□□□ -0.71
TRIM28-210ENST00000597618 FSBPO95073 299 aa10.64□□□□□ -0.71
TRIM28-210ENST00000597618 LDOC1O95751 146 aaPredicted RBP10.64□□□□□ -0.71
TRIM28-210ENST00000597618 C7P10643 843 aa10.64□□□□□ -0.71
TRIM28-210ENST00000597618 RARGP13631 454 aa10.64□□□□□ -0.71
TRIM28-210ENST00000597618 P4HA1P13674 534 aa10.64□□□□□ -0.71
TRIM28-210ENST00000597618 TRIM21P19474 475 aaKnown RBP10.64□□□□□ -0.71
TRIM28-210ENST00000597618 PSEN1P49768 467 aa10.64□□□□□ -0.71
TRIM28-210ENST00000597618 CYP2J2P51589 502 aa10.64□□□□□ -0.71
TRIM28-210ENST00000597618 ZBTB16Q05516 673 aa10.64□□□□□ -0.71
TRIM28-210ENST00000597618 TARDBPQ13148 414 aaKnown RBP eCLIP10.64□□□□□ -0.71
TRIM28-210ENST00000597618 BIRC3Q13489 604 aa10.64□□□□□ -0.71
TRIM28-210ENST00000597618 CAMK2GQ13555 558 aaPredicted RBP10.64□□□□□ -0.71
TRIM28-210ENST00000597618 BMT2Q1RMZ1 405 aa10.64□□□□□ -0.71
TRIM28-210ENST00000597618 TTC31Q49AM3 519 aaPredicted RBP10.64□□□□□ -0.71
TRIM28-210ENST00000597618 HES3Q5TGS1 186 aa10.64□□□□□ -0.71
TRIM28-210ENST00000597618 LARP1BQ659C4 914 aaKnown RBP10.64□□□□□ -0.71
TRIM28-210ENST00000597618 GPRIN1Q7Z2K8 1008 aa10.64□□□□□ -0.71
TRIM28-210ENST00000597618 XXYLT1Q8NBI6 393 aa10.64□□□□□ -0.71
TRIM28-210ENST00000597618 RBBP8NLQ8NC74 664 aaPredicted RBP10.64□□□□□ -0.71
TRIM28-210ENST00000597618 SORCS1Q8WY21 1168 aa10.64□□□□□ -0.71
TRIM28-210ENST00000597618 CNDP2Q96KP4 475 aaKnown RBP10.64□□□□□ -0.71
TRIM28-210ENST00000597618 SLC2A11Q9BYW1 496 aa10.64□□□□□ -0.71
TRIM28-210ENST00000597618 PNPLA8Q9NP80 782 aa10.64□□□□□ -0.71
TRIM28-210ENST00000597618 FBXO2Q9UK22 296 aaPredicted RBP10.64□□□□□ -0.71
TRIM28-210ENST00000597618 NAGPAQ9UK23 515 aa10.64□□□□□ -0.71
TRIM28-210ENST00000597618 SRPRBQ9Y5M8 271 aaKnown RBP10.64□□□□□ -0.71
TRIM28-210ENST00000597618 SHROOM3Q8TF72 1996 aa10.64□□□□□ -0.71
TRIM28-210ENST00000597618 CKAP5Q14008 2032 aa10.63□□□□□ -0.71
TRIM28-210ENST00000597618 COL5A1P20908 1838 aaPredicted RBP10.63□□□□□ -0.71
TRIM28-210ENST00000597618 COL6A6A6NMZ7 2263 aa10.63□□□□□ -0.71
TRIM28-210ENST00000597618 VILLO15195 856 aa10.63□□□□□ -0.71
TRIM28-210ENST00000597618 YKT6O15498 198 aa10.63□□□□□ -0.71
TRIM28-210ENST00000597618 KLKB1P03952 638 aa10.63□□□□□ -0.71
TRIM28-210ENST00000597618 RALAP11233 206 aa10.63□□□□□ -0.71
TRIM28-210ENST00000597618 ABCB4P21439 1286 aa10.63□□□□□ -0.71
TRIM28-210ENST00000597618 CORO1AP31146 461 aaKnown RBP10.63□□□□□ -0.71
TRIM28-210ENST00000597618 HOXD13P35453 343 aa10.63□□□□□ -0.71
TRIM28-210ENST00000597618 ACTN2P35609 894 aa10.63□□□□□ -0.71
TRIM28-210ENST00000597618 ACADVLP49748 655 aa10.63□□□□□ -0.71
TRIM28-210ENST00000597618 AP3M2P53677 418 aa10.63□□□□□ -0.71
TRIM28-210ENST00000597618 CLDN6P56747 220 aa10.63□□□□□ -0.71
TRIM28-210ENST00000597618 SNRPFP62306 86 aaKnown RBP10.63□□□□□ -0.71
TRIM28-210ENST00000597618 RACK1P63244 317 aaKnown RBP10.63□□□□□ -0.71
TRIM28-210ENST00000597618 COG7P83436 770 aa10.63□□□□□ -0.71
TRIM28-210ENST00000597618 TLE3Q04726 772 aa10.63□□□□□ -0.71
TRIM28-210ENST00000597618 NCOA4Q13772 614 aa10.63□□□□□ -0.71
TRIM28-210ENST00000597618 FNDC3BQ53EP0 1204 aaKnown RBP10.63□□□□□ -0.71
TRIM28-210ENST00000597618 KCNT1Q5JUK3 1230 aa10.63□□□□□ -0.71
TRIM28-210ENST00000597618 UNC93AQ86WB7 457 aa10.63□□□□□ -0.71
TRIM28-210ENST00000597618 CRYBG2Q8N1P7 616 aa10.63□□□□□ -0.71
TRIM28-210ENST00000597618 ZNF276Q8N554 614 aa10.63□□□□□ -0.71
TRIM28-210ENST00000597618 ZNF516Q92618 1163 aa10.63□□□□□ -0.71
TRIM28-210ENST00000597618 FGF11Q92914 225 aa10.63□□□□□ -0.71
TRIM28-210ENST00000597618 HPS3Q969F9 1004 aa10.63□□□□□ -0.71
TRIM28-210ENST00000597618 JAKMIP2Q96AA8 810 aa10.63□□□□□ -0.71
TRIM28-210ENST00000597618 SKA1Q96BD8 255 aa10.63□□□□□ -0.71
TRIM28-210ENST00000597618 TMEM176AQ96HP8 235 aa10.63□□□□□ -0.71
TRIM28-210ENST00000597618 TMX3Q96JJ7 454 aa10.63□□□□□ -0.71
TRIM28-210ENST00000597618 ELF4Q99607 663 aaPredicted RBP10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 153.1 ms