RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 SRGAP2O75044 1071 aa10.65□□□□□ -0.7
SS18-210ENST00000578700 PAPSS2O95340 614 aaPredicted RBP10.65□□□□□ -0.7
SS18-210ENST00000578700 VNN2O95498 520 aa10.65□□□□□ -0.7
SS18-210ENST00000578700 PAX3P23760 479 aa10.65□□□□□ -0.7
SS18-210ENST00000578700 MCM3P25205 808 aa10.65□□□□□ -0.7
SS18-210ENST00000578700 BRD2P25440 801 aaKnown RBP10.65□□□□□ -0.7
SS18-210ENST00000578700 RAP1GAPP47736 663 aa10.65□□□□□ -0.7
SS18-210ENST00000578700 DNA2P51530 1060 aa10.65□□□□□ -0.7
SS18-210ENST00000578700 GUCY2FP51841 1108 aa10.65□□□□□ -0.7
SS18-210ENST00000578700 LIMK1P53667 647 aa10.65□□□□□ -0.7
SS18-210ENST00000578700 NOMO3P69849 1222 aa10.65□□□□□ -0.7
SS18-210ENST00000578700 FCHO2Q0JRZ9 810 aa10.65□□□□□ -0.7
SS18-210ENST00000578700 INCA1Q0VD86 236 aa10.65□□□□□ -0.7
SS18-210ENST00000578700 COL9A2Q14055 689 aaPredicted RBP10.65□□□□□ -0.7
SS18-210ENST00000578700 TAF12Q16514 161 aa10.65□□□□□ -0.7
SS18-210ENST00000578700 RNF43Q68DV7 783 aa10.65□□□□□ -0.7
SS18-210ENST00000578700 GAREM2Q75VX8 874 aa10.65□□□□□ -0.7
SS18-210ENST00000578700 SLFN11Q7Z7L1 901 aa10.65□□□□□ -0.7
SS18-210ENST00000578700 UNC93AQ86WB7 457 aa10.65□□□□□ -0.7
SS18-210ENST00000578700 ERICH1Q86X53 443 aa10.65□□□□□ -0.7
SS18-210ENST00000578700 DNAAF5Q86Y56 855 aa10.65□□□□□ -0.7
SS18-210ENST00000578700 TTC9BQ8N6N2 239 aa10.65□□□□□ -0.7
SS18-210ENST00000578700 LRRC57Q8N9N7 239 aa10.65□□□□□ -0.7
SS18-210ENST00000578700 OLIG1Q8TAK6 271 aa10.65□□□□□ -0.7
SS18-210ENST00000578700 CXorf38Q8TB03 319 aa10.65□□□□□ -0.7
SS18-210ENST00000578700 IPO4Q8TEX9 1081 aaKnown RBP10.65□□□□□ -0.7
SS18-210ENST00000578700 ARHGEF26Q96DR7 871 aa10.65□□□□□ -0.7
SS18-210ENST00000578700 TMEM209Q96SK2 561 aa10.65□□□□□ -0.7
SS18-210ENST00000578700 NAP1L3Q99457 506 aaPredicted RBP10.65□□□□□ -0.7
SS18-210ENST00000578700 LHX5Q9H2C1 402 aa10.65□□□□□ -0.7
SS18-210ENST00000578700 OSGEPQ9NPF4 335 aa10.65□□□□□ -0.7
SS18-210ENST00000578700 GKN1Q9NS71 199 aa10.65□□□□□ -0.7
SS18-210ENST00000578700 THG1LQ9NWX6 298 aaKnown RBP10.65□□□□□ -0.7
SS18-210ENST00000578700 HESX1Q9UBX0 185 aa10.65□□□□□ -0.7
SS18-210ENST00000578700 SBDSQ9Y3A5 250 aaKnown RBP eCLIP10.65□□□□□ -0.7
SS18-210ENST00000578700 ZNF638Q14966 1978 aaKnown RBP10.65□□□□□ -0.71
SS18-210ENST00000578700 IGF2RP11717 2491 aa10.64□□□□□ -0.71
SS18-210ENST00000578700 OR6C75A6NL08 312 aa10.64□□□□□ -0.71
SS18-210ENST00000578700 C1QTNF9BB2RNN3 333 aa10.64□□□□□ -0.71
SS18-210ENST00000578700 MYO1FO00160 1098 aa10.64□□□□□ -0.71
SS18-210ENST00000578700 EPN2O95208 641 aa10.64□□□□□ -0.71
SS18-210ENST00000578700 PRAMEF12O95522 483 aa10.64□□□□□ -0.71
SS18-210ENST00000578700 PROS1P07225 676 aa10.64□□□□□ -0.71
SS18-210ENST00000578700 FAM163BP0C2L3 166 aa10.64□□□□□ -0.71
SS18-210ENST00000578700 C1QTNF9P0C862 333 aa10.64□□□□□ -0.71
SS18-210ENST00000578700 DESP17661 470 aa10.64□□□□□ -0.71
SS18-210ENST00000578700 SPINK2P20155 84 aa10.64□□□□□ -0.71
SS18-210ENST00000578700 MPLP40238 635 aa10.64□□□□□ -0.71
SS18-210ENST00000578700 SLC1A1P43005 524 aa10.64□□□□□ -0.71
SS18-210ENST00000578700 NOVA1P51513 510 aaKnown RBP10.64□□□□□ -0.71
SS18-210ENST00000578700 NDST1P52848 882 aa10.64□□□□□ -0.71
SS18-210ENST00000578700 RAD23BP54727 409 aa10.64□□□□□ -0.71
SS18-210ENST00000578700 CDH8P55286 799 aa10.64□□□□□ -0.71
SS18-210ENST00000578700 GRSF1Q12849 480 aaKnown RBP eCLIP10.64□□□□□ -0.71
SS18-210ENST00000578700 FOXC1Q12948 553 aa10.64□□□□□ -0.71
SS18-210ENST00000578700 CCINQ13939 588 aa10.64□□□□□ -0.71
SS18-210ENST00000578700 MESDQ14696 234 aa10.64□□□□□ -0.71
SS18-210ENST00000578700 CNGA2Q16280 664 aa10.64□□□□□ -0.71
SS18-210ENST00000578700 ERCC6LQ2NKX8 1250 aa10.64□□□□□ -0.71
SS18-210ENST00000578700 ITPRIPL2Q3MIP1 535 aa10.64□□□□□ -0.71
SS18-210ENST00000578700 MGAT5BQ3V5L5 792 aa10.64□□□□□ -0.71
SS18-210ENST00000578700 TRIM68Q6AZZ1 485 aa10.64□□□□□ -0.71
SS18-210ENST00000578700 OVOS1Q6IE37 1185 aa10.64□□□□□ -0.71
SS18-210ENST00000578700 TCEAL6Q6IPX3 200 aa10.64□□□□□ -0.71
SS18-210ENST00000578700 DNAJC24Q6P3W2 148 aa10.64□□□□□ -0.71
SS18-210ENST00000578700 MMS22LQ6ZRQ5 1243 aa10.64□□□□□ -0.71
SS18-210ENST00000578700 MON1BQ7L1V2 547 aa10.64□□□□□ -0.71
SS18-210ENST00000578700 DPH6Q7L8W6 267 aa10.64□□□□□ -0.71
SS18-210ENST00000578700 SYNPOQ8N3V7 929 aa10.64□□□□□ -0.71
SS18-210ENST00000578700 SLC4A11Q8NBS3 891 aa10.64□□□□□ -0.71
SS18-210ENST00000578700 TTC16Q8NEE8 873 aa10.64□□□□□ -0.71
SS18-210ENST00000578700 OR6B3Q8NGW1 331 aa10.64□□□□□ -0.71
SS18-210ENST00000578700 GIPC2Q8TF65 315 aa10.64□□□□□ -0.71
SS18-210ENST00000578700 TCEAL3Q969E4 200 aa10.64□□□□□ -0.71
SS18-210ENST00000578700 LOXL4Q96JB6 756 aa10.64□□□□□ -0.71
SS18-210ENST00000578700 TNIP3Q96KP6 325 aa10.64□□□□□ -0.71
SS18-210ENST00000578700 GCNAQ96QF7 691 aa10.64□□□□□ -0.71
SS18-210ENST00000578700 HHIPQ96QV1 700 aa10.64□□□□□ -0.71
SS18-210ENST00000578700 PSMB7Q99436 277 aa10.64□□□□□ -0.71
SS18-210ENST00000578700 SEPT5Q99719 369 aaPredicted RBP10.64□□□□□ -0.71
SS18-210ENST00000578700 LPIN3Q9BQK8 851 aa10.64□□□□□ -0.71
SS18-210ENST00000578700 C11orf70Q9BRQ4 267 aa10.64□□□□□ -0.71
SS18-210ENST00000578700 WDR35Q9P2L0 1181 aa10.64□□□□□ -0.71
SS18-210ENST00000578700 NOL12Q9UGY1 213 aaKnown RBP eCLIP10.64□□□□□ -0.71
SS18-210ENST00000578700 ZMIZ1Q9ULJ6 1067 aa10.64□□□□□ -0.71
SS18-210ENST00000578700 INVSQ9Y283 1065 aa10.64□□□□□ -0.71
SS18-210ENST00000578700 V9GYY5 206 aaPredicted RBP10.64□□□□□ -0.71
SS18-210ENST00000578700 DENND4CQ5VZ89 1909 aa10.64□□□□□ -0.71
SS18-210ENST00000578700 FAM170AA1A519 330 aa10.63□□□□□ -0.71
SS18-210ENST00000578700 CCDC66A2RUB6 948 aa10.63□□□□□ -0.71
SS18-210ENST00000578700 MTMR11A4FU01 709 aa10.63□□□□□ -0.71
SS18-210ENST00000578700 A8MXQ7 604 aa10.63□□□□□ -0.71
SS18-210ENST00000578700 M0QZQ0 153 aa10.63□□□□□ -0.71
SS18-210ENST00000578700 PGRMC1O00264 195 aaKnown RBP10.63□□□□□ -0.71
SS18-210ENST00000578700 PIRO00625 290 aa10.63□□□□□ -0.71
SS18-210ENST00000578700 GIPC1O14908 333 aa10.63□□□□□ -0.71
SS18-210ENST00000578700 DCLK1O15075 740 aa10.63□□□□□ -0.71
SS18-210ENST00000578700 ATMINO43313 823 aaPredicted RBP10.63□□□□□ -0.71
SS18-210ENST00000578700 CEP104O60308 925 aa10.63□□□□□ -0.71
SS18-210ENST00000578700 ATG13O75143 517 aa10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms