RNA–Protein interactions for RNA: ENST00000549271.1

DDX54-206, Transcript of DEAD-box helicase 54, humanhuman

TSL 2

Gene DDX54, Length 756 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX54-206ENST00000549271 GOLGA5Q8TBA6 731 aa12.87□□□□□ -0.35
DDX54-206ENST00000549271 ZFRQ96KR1 1074 aaKnown RBP12.87□□□□□ -0.35
DDX54-206ENST00000549271 GPR174Q9BXC1 333 aa12.87□□□□□ -0.35
DDX54-206ENST00000549271 ZNF518BQ9C0D4 1074 aa12.87□□□□□ -0.35
DDX54-206ENST00000549271 MIR1-1HGQ9H1L0 117 aa12.87□□□□□ -0.35
DDX54-206ENST00000549271 DPEP3Q9H4B8 488 aa12.87□□□□□ -0.35
DDX54-206ENST00000549271 SPHK2Q9NRA0 654 aa12.87□□□□□ -0.35
DDX54-206ENST00000549271 COMMD8Q9NX08 183 aa12.87□□□□□ -0.35
DDX54-206ENST00000549271 DNMT3LQ9UJW3 386 aa12.87□□□□□ -0.35
DDX54-206ENST00000549271 METTL12A8MUP2 240 aa12.86□□□□□ -0.35
DDX54-206ENST00000549271 KCNJ18B7U540 433 aa12.86□□□□□ -0.35
DDX54-206ENST00000549271 EXOC3O60645 756 aa12.86□□□□□ -0.35
DDX54-206ENST00000549271 ZDHHC11BP0C7U3 371 aa12.86□□□□□ -0.35
DDX54-206ENST00000549271 MBL2P11226 248 aaPredicted RBP12.86□□□□□ -0.35
DDX54-206ENST00000549271 CASP4P49662 377 aa12.86□□□□□ -0.35
DDX54-206ENST00000549271 TUBP50607 506 aa12.86□□□□□ -0.35
DDX54-206ENST00000549271 KCNC4Q03721 635 aa12.86□□□□□ -0.35
DDX54-206ENST00000549271 SRSF1Q07955 248 aaKnown RBP eCLIP12.86□□□□□ -0.35
DDX54-206ENST00000549271 RTP5Q14D33 572 aa12.86□□□□□ -0.35
DDX54-206ENST00000549271 C6orf118Q5T5N4 469 aa12.86□□□□□ -0.35
DDX54-206ENST00000549271 KIAA1324Q6UXG2 1013 aaKnown RBP12.86□□□□□ -0.35
DDX54-206ENST00000549271 PAQR9Q6ZVX9 377 aa12.86□□□□□ -0.35
DDX54-206ENST00000549271 TMEM25Q86YD3 366 aa12.86□□□□□ -0.35
DDX54-206ENST00000549271 PARD3BQ8TEW8 1205 aa12.86□□□□□ -0.35
DDX54-206ENST00000549271 WBP1Q96G27 269 aa12.86□□□□□ -0.35
DDX54-206ENST00000549271 HNRNPABQ99729 332 aaKnown RBP12.86□□□□□ -0.35
DDX54-206ENST00000549271 ITM2CQ9NQX7 267 aa12.86□□□□□ -0.35
DDX54-206ENST00000549271 GMIPQ9P107 970 aa12.86□□□□□ -0.35
DDX54-206ENST00000549271 TRAF3IP3Q9Y228 551 aa12.86□□□□□ -0.35
DDX54-206ENST00000549271 ATP8B3O60423 1300 aa12.86□□□□□ -0.35
DDX54-206ENST00000549271 UBR5O95071 2799 aaPredicted RBP12.86□□□□□ -0.35
DDX54-206ENST00000549271 CKAP5Q14008 2032 aa12.85□□□□□ -0.35
DDX54-206ENST00000549271 A0A1B0GVT2 93 aa12.85□□□□□ -0.35
DDX54-206ENST00000549271 LRRIQ3A6PVS8 624 aaPredicted RBP12.85□□□□□ -0.35
DDX54-206ENST00000549271 PRRT4C9JH25 899 aa12.85□□□□□ -0.35
DDX54-206ENST00000549271 GFRA2O00451 464 aa12.85□□□□□ -0.35
DDX54-206ENST00000549271 CLDN5O00501 218 aa12.85□□□□□ -0.35
DDX54-206ENST00000549271 PCDHGA12O60330 932 aa12.85□□□□□ -0.35
DDX54-206ENST00000549271 ABL1P00519 1130 aa12.85□□□□□ -0.35
DDX54-206ENST00000549271 NR3C1P04150 777 aa12.85□□□□□ -0.35
DDX54-206ENST00000549271 TLE3Q04726 772 aa12.85□□□□□ -0.35
DDX54-206ENST00000549271 KIF19Q2TAC6 998 aa12.85□□□□□ -0.35
DDX54-206ENST00000549271 CCDC157Q569K6 752 aa12.85□□□□□ -0.35
DDX54-206ENST00000549271 HECTD3Q5T447 861 aa12.85□□□□□ -0.35
DDX54-206ENST00000549271 GRAMD4Q6IC98 578 aa12.85□□□□□ -0.35
DDX54-206ENST00000549271 BBS7Q8IWZ6 715 aa12.85□□□□□ -0.35
DDX54-206ENST00000549271 BAP1Q92560 729 aa12.85□□□□□ -0.35
DDX54-206ENST00000549271 TNIP3Q96KP6 325 aa12.85□□□□□ -0.35
DDX54-206ENST00000549271 NRSN2Q9GZP1 204 aa12.85□□□□□ -0.35
DDX54-206ENST00000549271 NXF1Q9UBU9 619 aaKnown RBP12.85□□□□□ -0.35
DDX54-206ENST00000549271 EIF2B4Q9UI10 523 aaKnown RBP12.85□□□□□ -0.35
DDX54-206ENST00000549271 MAPK8IP1Q9UQF2 711 aa12.85□□□□□ -0.35
DDX54-206ENST00000549271 PCDHGA1Q9Y5H4 931 aa12.85□□□□□ -0.35
DDX54-206ENST00000549271 NUMA1Q14980 2115 aa12.85□□□□□ -0.35
DDX54-206ENST00000549271 WASH3PC4AMC7 463 aa12.84□□□□□ -0.35
DDX54-206ENST00000549271 PYCARD-AS1I3L0S3 204 aa12.84□□□□□ -0.35
DDX54-206ENST00000549271 COCHO43405 550 aa12.84□□□□□ -0.35
DDX54-206ENST00000549271 CACNG3O60359 315 aa12.84□□□□□ -0.35
DDX54-206ENST00000549271 PHACTR2O75167 634 aa12.84□□□□□ -0.35
DDX54-206ENST00000549271 IGLV3-19P01714 112 aa12.84□□□□□ -0.35
DDX54-206ENST00000549271 C4BPAP04003 597 aaKnown RBP12.84□□□□□ -0.35
DDX54-206ENST00000549271 CSNK1EP49674 416 aaKnown RBP12.84□□□□□ -0.35
DDX54-206ENST00000549271 DLG4P78352 724 aa12.84□□□□□ -0.35
DDX54-206ENST00000549271 PNOCQ13519 176 aa12.84□□□□□ -0.35
DDX54-206ENST00000549271 NCOA4Q13772 614 aa12.84□□□□□ -0.35
DDX54-206ENST00000549271 NFIL3Q16649 462 aa12.84□□□□□ -0.35
DDX54-206ENST00000549271 ANO4Q32M45 955 aa12.84□□□□□ -0.35
DDX54-206ENST00000549271 FUT11Q495W5 492 aa12.84□□□□□ -0.35
DDX54-206ENST00000549271 ZNF667Q5HYK9 610 aa12.84□□□□□ -0.35
DDX54-206ENST00000549271 C1orf220Q5T0J3 134 aa12.84□□□□□ -0.35
DDX54-206ENST00000549271 FAM35AQ86V20 835 aa12.84□□□□□ -0.35
DDX54-206ENST00000549271 GUF1Q8N442 669 aaKnown RBP12.84□□□□□ -0.35
DDX54-206ENST00000549271 FAM181AQ8N9Y4 354 aa12.84□□□□□ -0.35
DDX54-206ENST00000549271 FBXO32Q969P5 355 aa12.84□□□□□ -0.35
DDX54-206ENST00000549271 CCDC47Q96A33 483 aaKnown RBP12.84□□□□□ -0.35
DDX54-206ENST00000549271 SMARCD1Q96GM5 515 aa12.84□□□□□ -0.35
DDX54-206ENST00000549271 KCNK16Q96T55 309 aa12.84□□□□□ -0.35
DDX54-206ENST00000549271 SEMA4CQ9C0C4 833 aa12.84□□□□□ -0.35
DDX54-206ENST00000549271 MKRN2Q9H000 416 aaKnown RBP12.84□□□□□ -0.35
DDX54-206ENST00000549271 SMYD3Q9H7B4 428 aa12.84□□□□□ -0.35
DDX54-206ENST00000549271 CSNK1G1Q9HCP0 422 aa12.84□□□□□ -0.35
DDX54-206ENST00000549271 DMAP1Q9NPF5 467 aaPredicted RBP12.84□□□□□ -0.35
DDX54-206ENST00000549271 DNAJC17Q9NVM6 304 aaKnown RBP12.84□□□□□ -0.35
DDX54-206ENST00000549271 SNX11Q9Y5W9 270 aa12.84□□□□□ -0.35
DDX54-206ENST00000549271 SLCO1B1Q9Y6L6 691 aa12.84□□□□□ -0.35
DDX54-206ENST00000549271 TEX15Q9BXT5 2789 aa12.83□□□□□ -0.36
DDX54-206ENST00000549271 GOLGA6L4A6NEF3 574 aa12.83□□□□□ -0.36
DDX54-206ENST00000549271 B8ZZF3 427 aa12.83□□□□□ -0.36
DDX54-206ENST00000549271 PAPSS1O43252 624 aaPredicted RBP12.83□□□□□ -0.36
DDX54-206ENST00000549271 CALUO43852 315 aaPredicted RBP12.83□□□□□ -0.36
DDX54-206ENST00000549271 WISP1O95388 367 aa12.83□□□□□ -0.36
DDX54-206ENST00000549271 VNN1O95497 513 aa12.83□□□□□ -0.36
DDX54-206ENST00000549271 JUPP14923 745 aa12.83□□□□□ -0.36
DDX54-206ENST00000549271 OXTRP30559 389 aa12.83□□□□□ -0.36
DDX54-206ENST00000549271 HNF1BP35680 557 aa12.83□□□□□ -0.36
DDX54-206ENST00000549271 TPMTP51580 245 aa12.83□□□□□ -0.36
DDX54-206ENST00000549271 AFF3P51826 1226 aaKnown RBP12.83□□□□□ -0.36
DDX54-206ENST00000549271 SLC5A3P53794 718 aa12.83□□□□□ -0.36
DDX54-206ENST00000549271 CDH8P55286 799 aa12.83□□□□□ -0.36
DDX54-206ENST00000549271 CLDN6P56747 220 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms