RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), human

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-233	ENST00000531141	TCEA3	O75764	348 aa		4.39	□□□□□ -1.71
CD44-233	ENST00000531141	RNF8	O76064	485 aa		4.39	□□□□□ -1.71
CD44-233	ENST00000531141	TNFRSF6B	O95407	300 aa		4.39	□□□□□ -1.71
CD44-233	ENST00000531141	MBP	P02686	304 aa	Predicted RBP	4.39	□□□□□ -1.71
CD44-233	ENST00000531141	DUSP1	P28562	367 aa		4.39	□□□□□ -1.71
CD44-233	ENST00000531141	CD38	P28907	300 aa		4.39	□□□□□ -1.71
CD44-233	ENST00000531141	AKT1	P31749	480 aa		4.39	□□□□□ -1.71
CD44-233	ENST00000531141	GALNS	P34059	522 aa		4.39	□□□□□ -1.71
CD44-233	ENST00000531141	SERPINF1	P36955	418 aa		4.39	□□□□□ -1.71
CD44-233	ENST00000531141	WDR5	P61964	334 aa	Known RBP	4.39	□□□□□ -1.71
CD44-233	ENST00000531141	TFF2	Q03403	129 aa		4.39	□□□□□ -1.71
CD44-233	ENST00000531141	GRM4	Q14833	912 aa		4.39	□□□□□ -1.71
CD44-233	ENST00000531141	MFSD13A	Q14CX5	517 aa		4.39	□□□□□ -1.71
CD44-233	ENST00000531141	ELF2	Q15723	593 aa		4.39	□□□□□ -1.71
CD44-233	ENST00000531141	CCDC38	Q502W7	563 aa		4.39	□□□□□ -1.71
CD44-233	ENST00000531141	LIN54	Q6MZP7	749 aa		4.39	□□□□□ -1.71
CD44-233	ENST00000531141	RINT1	Q6NUQ1	792 aa		4.39	□□□□□ -1.71
CD44-233	ENST00000531141	GGT6	Q6P531	493 aa		4.39	□□□□□ -1.71
CD44-233	ENST00000531141	TRABD2A	Q86V40	505 aa		4.39	□□□□□ -1.71
CD44-233	ENST00000531141	CHSY1	Q86X52	802 aa		4.39	□□□□□ -1.71
CD44-233	ENST00000531141	PNLDC1	Q8NA58	520 aa	Known RBP	4.39	□□□□□ -1.71
CD44-233	ENST00000531141	ATG16L2	Q8NAA4	619 aa		4.39	□□□□□ -1.71
CD44-233	ENST00000531141	GLMP	Q8WWB7	406 aa		4.39	□□□□□ -1.71
CD44-233	ENST00000531141	CCDC17	Q96LX7	622 aa		4.39	□□□□□ -1.71
CD44-233	ENST00000531141	RTKN	Q9BST9	563 aa		4.39	□□□□□ -1.71
CD44-233	ENST00000531141	ADGRE3	Q9BY15	652 aa		4.39	□□□□□ -1.71
CD44-233	ENST00000531141	EPS8L2	Q9H6S3	715 aa		4.39	□□□□□ -1.71
CD44-233	ENST00000531141	ABHD10	Q9NUJ1	306 aa		4.39	□□□□□ -1.71
CD44-233	ENST00000531141	PCDHB2	Q9Y5E7	798 aa		4.39	□□□□□ -1.71
CD44-233	ENST00000531141	hCG_1642624	A0A1W2PR95	340 aa		4.38	□□□□□ -1.71
CD44-233	ENST00000531141	IFRD1	O00458	451 aa	Predicted RBP	4.38	□□□□□ -1.71
CD44-233	ENST00000531141	FCHO1	O14526	889 aa		4.38	□□□□□ -1.71
CD44-233	ENST00000531141	RPP40	O75818	363 aa	Known RBP	4.38	□□□□□ -1.71
CD44-233	ENST00000531141	SLC3A2	P08195	630 aa	Known RBP	4.38	□□□□□ -1.71
CD44-233	ENST00000531141	NHLRC4	P0CG21	123 aa	Predicted RBP	4.38	□□□□□ -1.71
CD44-233	ENST00000531141	KLRK1	P26718	216 aa		4.38	□□□□□ -1.71
CD44-233	ENST00000531141	TRIM60	Q495X7	471 aa		4.38	□□□□□ -1.71
CD44-233	ENST00000531141	TMEM119	Q4V9L6	283 aa		4.38	□□□□□ -1.71
CD44-233	ENST00000531141	CC2D1B	Q5T0F9	858 aa	Known RBP	4.38	□□□□□ -1.71
CD44-233	ENST00000531141	TANGO2	Q6ICL3	276 aa		4.38	□□□□□ -1.71
CD44-233	ENST00000531141	ERAP2	Q6P179	960 aa		4.38	□□□□□ -1.71
CD44-233	ENST00000531141	ACSM6	Q6P461	480 aa		4.38	□□□□□ -1.71
CD44-233	ENST00000531141	RINL	Q6ZS11	566 aa		4.38	□□□□□ -1.71
CD44-233	ENST00000531141	NPIPB3	Q92617	1050 aa		4.38	□□□□□ -1.71
CD44-233	ENST00000531141	SEMA4C	Q9C0C4	833 aa		4.38	□□□□□ -1.71
CD44-233	ENST00000531141	CDCP1	Q9H5V8	836 aa		4.38	□□□□□ -1.71
CD44-233	ENST00000531141	HERC5	Q9UII4	1024 aa	Known RBP	4.38	□□□□□ -1.71
CD44-233	ENST00000531141	TTC34	A8MYJ7	566 aa		4.37	□□□□□ -1.71
CD44-233	ENST00000531141	PRRT4	C9JH25	899 aa		4.37	□□□□□ -1.71
CD44-233	ENST00000531141	CLIC1	O00299	241 aa		4.37	□□□□□ -1.71
CD44-233	ENST00000531141	FYB1	O15117	783 aa		4.37	□□□□□ -1.71
CD44-233	ENST00000531141	DNPH1	O43598	174 aa		4.37	□□□□□ -1.71
CD44-233	ENST00000531141	ACTL6B	O94805	426 aa		4.37	□□□□□ -1.71
CD44-233	ENST00000531141	CYP2A6	P11509	494 aa	Predicted RBP	4.37	□□□□□ -1.71
CD44-233	ENST00000531141	CERS1	P27544	350 aa		4.37	□□□□□ -1.71
CD44-233	ENST00000531141	NDUFS1	P28331	727 aa		4.37	□□□□□ -1.71
CD44-233	ENST00000531141	FOXF2	Q12947	444 aa		4.37	□□□□□ -1.71
CD44-233	ENST00000531141	CNGA3	Q16281	694 aa		4.37	□□□□□ -1.71
CD44-233	ENST00000531141	TUBB8	Q3ZCM7	444 aa		4.37	□□□□□ -1.71
CD44-233	ENST00000531141	ATPAF1	Q5TC12	328 aa	Predicted RBP	4.37	□□□□□ -1.71
CD44-233	ENST00000531141	CCDC174	Q6PII3	467 aa		4.37	□□□□□ -1.71
CD44-233	ENST00000531141	KLHL17	Q6TDP4	642 aa		4.37	□□□□□ -1.71
CD44-233	ENST00000531141	ZNF782	Q6ZMW2	699 aa	Predicted RBP	4.37	□□□□□ -1.71
CD44-233	ENST00000531141	ZNF813	Q6ZN06	617 aa		4.37	□□□□□ -1.71
CD44-233	ENST00000531141	RAB11FIP2	Q7L804	512 aa		4.37	□□□□□ -1.71
CD44-233	ENST00000531141	SLC44A2	Q8IWA5	706 aa	Predicted RBP	4.37	□□□□□ -1.71
CD44-233	ENST00000531141	PNISR	Q8TF01	805 aa	Known RBP	4.37	□□□□□ -1.71
CD44-233	ENST00000531141	SLC22A17	Q8WUG5	538 aa		4.37	□□□□□ -1.71
CD44-233	ENST00000531141	DPF1	Q92782	380 aa		4.37	□□□□□ -1.71
CD44-233	ENST00000531141	PRR11	Q96HE9	360 aa	Predicted RBP	4.37	□□□□□ -1.71
CD44-233	ENST00000531141	MAGEH1	Q9H213	219 aa		4.37	□□□□□ -1.71
CD44-233	ENST00000531141	AGO4	Q9HCK5	861 aa	Known RBP	4.37	□□□□□ -1.71
CD44-233	ENST00000531141	PTPRH	Q9HD43	1115 aa		4.37	□□□□□ -1.71
CD44-233	ENST00000531141	FLRT1	Q9NZU1	646 aa		4.37	□□□□□ -1.71
CD44-233	ENST00000531141	SEMA5B	Q9P283	1151 aa		4.37	□□□□□ -1.71
CD44-233	ENST00000531141	PCDHB7	Q9Y5E2	793 aa		4.37	□□□□□ -1.71
CD44-233	ENST00000531141	SIRT4	Q9Y6E7	314 aa	Predicted RBP	4.37	□□□□□ -1.71
CD44-233	ENST00000531141	FNDC1	Q4ZHG4	1894 aa	Predicted RBP	4.37	□□□□□ -1.71
CD44-233	ENST00000531141	LOC105369274	A0A096LPK9	316 aa		4.36	□□□□□ -1.71
CD44-233	ENST00000531141	LOC102723532	A0A0G2JNH3	316 aa		4.36	□□□□□ -1.71
CD44-233	ENST00000531141	LOC105378220	A0A1B0GUY1	285 aa	Predicted RBP	4.36	□□□□□ -1.71
CD44-233	ENST00000531141		M0QZQ0	153 aa		4.36	□□□□□ -1.71
CD44-233	ENST00000531141	NKX2-8	O15522	239 aa		4.36	□□□□□ -1.71
CD44-233	ENST00000531141	LARGE1	O95461	756 aa		4.36	□□□□□ -1.71
CD44-233	ENST00000531141	CER1	O95813	267 aa		4.36	□□□□□ -1.71
CD44-233	ENST00000531141	LATS1	O95835	1130 aa		4.36	□□□□□ -1.71
CD44-233	ENST00000531141	ALAD	P13716	330 aa		4.36	□□□□□ -1.71
CD44-233	ENST00000531141	VEGFA	P15692	232 aa	Predicted RBP	4.36	□□□□□ -1.71
CD44-233	ENST00000531141	ATF7	P17544	494 aa	Predicted RBP	4.36	□□□□□ -1.71
CD44-233	ENST00000531141	SLC8A1	P32418	973 aa		4.36	□□□□□ -1.71
CD44-233	ENST00000531141	THBS4	P35443	961 aa		4.36	□□□□□ -1.71
CD44-233	ENST00000531141	CHKA	P35790	457 aa		4.36	□□□□□ -1.71
CD44-233	ENST00000531141	GRK6	P43250	576 aa		4.36	□□□□□ -1.71
CD44-233	ENST00000531141	SLC14A1	Q13336	389 aa		4.36	□□□□□ -1.71
CD44-233	ENST00000531141	AAK1	Q2M2I8	961 aa		4.36	□□□□□ -1.71
CD44-233	ENST00000531141	BTBD16	Q32M84	506 aa		4.36	□□□□□ -1.71
CD44-233	ENST00000531141	NFRKB	Q6P4R8	1299 aa		4.36	□□□□□ -1.71
CD44-233	ENST00000531141	ZNF66	Q6ZN08	573 aa		4.36	□□□□□ -1.71
CD44-233	ENST00000531141	OR4N4	Q8N0Y3	316 aa		4.36	□□□□□ -1.71
CD44-233	ENST00000531141	C8orf58	Q8NAV2	365 aa		4.36	□□□□□ -1.71

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