RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 PIWIL1Q96J94 861 aaKnown RBP11.9□□□□□ -0.5
VPS28-214ENST00000531032 SCNM1Q9BWG6 230 aa11.9□□□□□ -0.5
VPS28-214ENST00000531032 GTPBP2Q9BX10 602 aaKnown RBP11.9□□□□□ -0.5
VPS28-214ENST00000531032 MARCH2Q9P0N8 246 aa11.9□□□□□ -0.5
VPS28-214ENST00000531032 USP36Q9P275 1121 aaKnown RBP11.9□□□□□ -0.5
VPS28-214ENST00000531032 THAP10Q9P2Z0 257 aaPredicted RBP11.9□□□□□ -0.5
VPS28-214ENST00000531032 STRIP2Q9ULQ0 834 aa11.9□□□□□ -0.5
VPS28-214ENST00000531032 COQ4Q9Y3A0 265 aa11.9□□□□□ -0.5
VPS28-214ENST00000531032 CKAP5Q14008 2032 aa11.89□□□□□ -0.51
VPS28-214ENST00000531032 WDFY3Q8IZQ1 3526 aa11.89□□□□□ -0.51
VPS28-214ENST00000531032 CETN3O15182 167 aa11.89□□□□□ -0.51
VPS28-214ENST00000531032 SLC16A3O15427 465 aaKnown RBP11.89□□□□□ -0.51
VPS28-214ENST00000531032 OPHN1O60890 802 aa11.89□□□□□ -0.51
VPS28-214ENST00000531032 NDUFS2O75306 463 aa11.89□□□□□ -0.51
VPS28-214ENST00000531032 ZBED1O96006 694 aa11.89□□□□□ -0.51
VPS28-214ENST00000531032 SYPP08247 313 aa11.89□□□□□ -0.51
VPS28-214ENST00000531032 HMBSP08397 361 aa11.89□□□□□ -0.51
VPS28-214ENST00000531032 CD6P30203 668 aa11.89□□□□□ -0.51
VPS28-214ENST00000531032 IL12RB1P42701 662 aa11.89□□□□□ -0.51
VPS28-214ENST00000531032 TKTL1P51854 596 aa11.89□□□□□ -0.51
VPS28-214ENST00000531032 BCAT1P54687 386 aa11.89□□□□□ -0.51
VPS28-214ENST00000531032 SLC8A3P57103 927 aa11.89□□□□□ -0.51
VPS28-214ENST00000531032 YWHAGP61981 247 aaKnown RBP eCLIP11.89□□□□□ -0.51
VPS28-214ENST00000531032 STARD3Q14849 445 aa11.89□□□□□ -0.51
VPS28-214ENST00000531032 EIF4HQ15056 248 aaKnown RBP11.89□□□□□ -0.51
VPS28-214ENST00000531032 CBWD6Q4V339 395 aa11.89□□□□□ -0.51
VPS28-214ENST00000531032 COBLL1Q53SF7 1204 aa11.89□□□□□ -0.51
VPS28-214ENST00000531032 CBWD3Q5JTY5 395 aa11.89□□□□□ -0.51
VPS28-214ENST00000531032 CBWD5Q5RIA9 395 aa11.89□□□□□ -0.51
VPS28-214ENST00000531032 KIAA1324Q6UXG2 1013 aaKnown RBP11.89□□□□□ -0.51
VPS28-214ENST00000531032 RSRC2Q7L4I2 434 aaKnown RBP11.89□□□□□ -0.51
VPS28-214ENST00000531032 ANKS1BQ7Z6G8 1248 aa11.89□□□□□ -0.51
VPS28-214ENST00000531032 DENND1CQ8IV53 801 aa11.89□□□□□ -0.51
VPS28-214ENST00000531032 ZC3H3Q8IXZ2 948 aaKnown RBP11.89□□□□□ -0.51
VPS28-214ENST00000531032 MINDY1Q8N5J2 469 aa11.89□□□□□ -0.51
VPS28-214ENST00000531032 RBBP8NLQ8NC74 664 aaPredicted RBP11.89□□□□□ -0.51
VPS28-214ENST00000531032 UCMAQ8WVF2 138 aa11.89□□□□□ -0.51
VPS28-214ENST00000531032 GATA6Q92908 595 aa11.89□□□□□ -0.51
VPS28-214ENST00000531032 TATDN2Q93075 761 aa11.89□□□□□ -0.51
VPS28-214ENST00000531032 PLD4Q96BZ4 506 aa11.89□□□□□ -0.51
VPS28-214ENST00000531032 CCDC34Q96HJ3 373 aa11.89□□□□□ -0.51
VPS28-214ENST00000531032 MKRN2Q9H000 416 aaKnown RBP11.89□□□□□ -0.51
VPS28-214ENST00000531032 DNAAF2Q9NVR5 837 aaKnown RBP11.89□□□□□ -0.51
VPS28-214ENST00000531032 SUSD2Q9UGT4 822 aa11.89□□□□□ -0.51
VPS28-214ENST00000531032 CLEC4EQ9ULY5 219 aa11.89□□□□□ -0.51
VPS28-214ENST00000531032 NFE2L3Q9Y4A8 694 aa11.89□□□□□ -0.51
VPS28-214ENST00000531032 IGF2RP11717 2491 aa11.89□□□□□ -0.51
VPS28-214ENST00000531032 ZZEF1O43149 2961 aa11.88□□□□□ -0.51
VPS28-214ENST00000531032 AKAP13Q12802 2813 aa11.88□□□□□ -0.51
VPS28-214ENST00000531032 SPAARA0A1B0GVQ0 90 aa11.88□□□□□ -0.51
VPS28-214ENST00000531032 SLC12A8A0AV02 714 aa11.88□□□□□ -0.51
VPS28-214ENST00000531032 TMEM8BA6NDV4 472 aa11.88□□□□□ -0.51
VPS28-214ENST00000531032 TULP2O00295 520 aa11.88□□□□□ -0.51
VPS28-214ENST00000531032 XPO1O14980 1071 aaKnown RBP11.88□□□□□ -0.51
VPS28-214ENST00000531032 GJB3O75712 270 aa11.88□□□□□ -0.51
VPS28-214ENST00000531032 CYBBP04839 570 aa11.88□□□□□ -0.51
VPS28-214ENST00000531032 CD59P13987 128 aa11.88□□□□□ -0.51
VPS28-214ENST00000531032 PRCPP42785 496 aa11.88□□□□□ -0.51
VPS28-214ENST00000531032 CUL2Q13617 745 aa11.88□□□□□ -0.51
VPS28-214ENST00000531032 E2F5Q15329 346 aa11.88□□□□□ -0.51
VPS28-214ENST00000531032 TRIP4Q15650 581 aaPredicted RBP11.88□□□□□ -0.51
VPS28-214ENST00000531032 GOLGA7BQ2TAP0 167 aa11.88□□□□□ -0.51
VPS28-214ENST00000531032 SYCP2LQ5T4T6 812 aa11.88□□□□□ -0.51
VPS28-214ENST00000531032 OR2I1PQ8NGU4 316 aa11.88□□□□□ -0.51
VPS28-214ENST00000531032 SLC2A11Q9BYW1 496 aa11.88□□□□□ -0.51
VPS28-214ENST00000531032 ULBP1Q9BZM6 244 aa11.88□□□□□ -0.51
VPS28-214ENST00000531032 PRDM16Q9HAZ2 1276 aa11.88□□□□□ -0.51
VPS28-214ENST00000531032 ITM2CQ9NQX7 267 aa11.88□□□□□ -0.51
VPS28-214ENST00000531032 OLA1Q9NTK5 396 aaKnown RBP11.88□□□□□ -0.51
VPS28-214ENST00000531032 RMND1Q9NWS8 449 aa11.88□□□□□ -0.51
VPS28-214ENST00000531032 ELOVL2Q9NXB9 296 aa11.88□□□□□ -0.51
VPS28-214ENST00000531032 WSB2Q9NYS7 404 aaPredicted RBP11.88□□□□□ -0.51
VPS28-214ENST00000531032 TSPAN16Q9UKR8 245 aa11.88□□□□□ -0.51
VPS28-214ENST00000531032 ZMIZ1Q9ULJ6 1067 aa11.88□□□□□ -0.51
VPS28-214ENST00000531032 NEUROG3Q9Y4Z2 214 aa11.88□□□□□ -0.51
VPS28-214ENST00000531032 MUC22E2RYF6 1773 aaPredicted RBP11.87□□□□□ -0.51
VPS28-214ENST00000531032 SPEGQ15772 3267 aa11.87□□□□□ -0.51
VPS28-214ENST00000531032 SYNCRIPO60506 623 aaKnown RBP11.87□□□□□ -0.51
VPS28-214ENST00000531032 IGLV3-19P01714 112 aa11.87□□□□□ -0.51
VPS28-214ENST00000531032 GNSP15586 552 aa11.87□□□□□ -0.51
VPS28-214ENST00000531032 PRKCHP24723 683 aa11.87□□□□□ -0.51
VPS28-214ENST00000531032 HOXD9P28356 352 aaPredicted RBP11.87□□□□□ -0.51
VPS28-214ENST00000531032 COPAP53621 1224 aa11.87□□□□□ -0.51
VPS28-214ENST00000531032 SIM1P81133 766 aaPredicted RBP11.87□□□□□ -0.51
VPS28-214ENST00000531032 FKBP3Q00688 224 aaKnown RBP11.87□□□□□ -0.51
VPS28-214ENST00000531032 PDE4CQ08493 712 aa11.87□□□□□ -0.51
VPS28-214ENST00000531032 BST2Q10589 180 aaKnown RBP11.87□□□□□ -0.51
VPS28-214ENST00000531032 SLC14A1Q13336 389 aa11.87□□□□□ -0.51
VPS28-214ENST00000531032 PNOCQ13519 176 aa11.87□□□□□ -0.51
VPS28-214ENST00000531032 HNRNPDQ14103 355 aaKnown RBP11.87□□□□□ -0.51
VPS28-214ENST00000531032 ZNF234Q14588 700 aa11.87□□□□□ -0.51
VPS28-214ENST00000531032 PLEKHG6Q3KR16 790 aa11.87□□□□□ -0.51
VPS28-214ENST00000531032 SGO2Q562F6 1265 aa11.87□□□□□ -0.51
VPS28-214ENST00000531032 DCAF17Q5H9S7 520 aaPredicted RBP11.87□□□□□ -0.51
VPS28-214ENST00000531032 WDR45BQ5MNZ6 344 aa11.87□□□□□ -0.51
VPS28-214ENST00000531032 ZNF658Q5TYW1 1059 aaPredicted RBP11.87□□□□□ -0.51
VPS28-214ENST00000531032 TCERG1LQ5VWI1 586 aa11.87□□□□□ -0.51
VPS28-214ENST00000531032 TMEM215Q68D42 235 aa11.87□□□□□ -0.51
VPS28-214ENST00000531032 TMPRSS6Q8IU80 811 aa11.87□□□□□ -0.51
VPS28-214ENST00000531032 FMNL3Q8IVF7 1028 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms