RNA–Protein interactions for RNA: ENST00000530784.1

CSDE1-213, Transcript of cold shock domain containing E1, humanhuman

TSL 2

Gene CSDE1, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-213ENST00000530784 FAM163BP0C2L3 166 aa8.28□□□□□ -1.08
CSDE1-213ENST00000530784 ADORA2AP29274 412 aa8.28□□□□□ -1.08
CSDE1-213ENST00000530784 ATXN1P54253 815 aaKnown RBP8.28□□□□□ -1.08
CSDE1-213ENST00000530784 CACNB3P54284 484 aa8.28□□□□□ -1.08
CSDE1-213ENST00000530784 PROK1P58294 105 aa8.28□□□□□ -1.08
CSDE1-213ENST00000530784 LMOD3Q0VAK6 560 aa8.28□□□□□ -1.08
CSDE1-213ENST00000530784 DEPDC1Q5TB30 811 aa8.28□□□□□ -1.08
CSDE1-213ENST00000530784 RNF220Q5VTB9 566 aa8.28□□□□□ -1.08
CSDE1-213ENST00000530784 CHST15Q7LFX5 561 aaPredicted RBP8.28□□□□□ -1.08
CSDE1-213ENST00000530784 CNTROBQ8N137 903 aa8.28□□□□□ -1.08
CSDE1-213ENST00000530784 OR56A3Q8NH54 315 aa8.28□□□□□ -1.08
CSDE1-213ENST00000530784 UTP14AQ9BVJ6 771 aaKnown RBP8.28□□□□□ -1.08
CSDE1-213ENST00000530784 ZNF518BQ9C0D4 1074 aa8.28□□□□□ -1.08
CSDE1-213ENST00000530784 BHMT2Q9H2M3 363 aa8.28□□□□□ -1.08
CSDE1-213ENST00000530784 SACM1LQ9NTJ5 587 aa8.28□□□□□ -1.08
CSDE1-213ENST00000530784 OBP2AQ9NY56 170 aa8.28□□□□□ -1.08
CSDE1-213ENST00000530784 WNT6Q9Y6F9 365 aa8.28□□□□□ -1.08
CSDE1-213ENST00000530784 DLG5Q8TDM6 1919 aa8.28□□□□□ -1.08
CSDE1-213ENST00000530784 FRMPD2Q68DX3 1309 aaPredicted RBP8.28□□□□□ -1.08
CSDE1-213ENST00000530784 TPP1O14773 563 aa8.27□□□□□ -1.09
CSDE1-213ENST00000530784 PPIP5K2O43314 1243 aa8.27□□□□□ -1.09
CSDE1-213ENST00000530784 FRS3O43559 492 aa8.27□□□□□ -1.09
CSDE1-213ENST00000530784 BRAFP15056 766 aa8.27□□□□□ -1.09
CSDE1-213ENST00000530784 ZNF37AP17032 561 aaPredicted RBP8.27□□□□□ -1.09
CSDE1-213ENST00000530784 EIF2S2P20042 333 aaKnown RBP8.27□□□□□ -1.09
CSDE1-213ENST00000530784 CYP2C18P33260 490 aa8.27□□□□□ -1.09
CSDE1-213ENST00000530784 CTCFP49711 727 aaPredicted RBP8.27□□□□□ -1.09
CSDE1-213ENST00000530784 PDE6CP51160 858 aa8.27□□□□□ -1.09
CSDE1-213ENST00000530784 RIPK4P57078 832 aa8.27□□□□□ -1.09
CSDE1-213ENST00000530784 MRPS21P82921 87 aaKnown RBP8.27□□□□□ -1.09
CSDE1-213ENST00000530784 GBX1Q14549 363 aa8.27□□□□□ -1.09
CSDE1-213ENST00000530784 HSP90AB3PQ58FF7 597 aa8.27□□□□□ -1.09
CSDE1-213ENST00000530784 ZDHHC24Q6UX98 284 aa8.27□□□□□ -1.09
CSDE1-213ENST00000530784 SRGAP1Q7Z6B7 1085 aa8.27□□□□□ -1.09
CSDE1-213ENST00000530784 MICU3Q86XE3 530 aa8.27□□□□□ -1.09
CSDE1-213ENST00000530784 FMNL3Q8IVF7 1028 aa8.27□□□□□ -1.09
CSDE1-213ENST00000530784 WDR75Q8IWA0 830 aaKnown RBP8.27□□□□□ -1.09
CSDE1-213ENST00000530784 R3HDM4Q96D70 268 aa8.27□□□□□ -1.09
CSDE1-213ENST00000530784 BABAM1Q9NWV8 329 aa8.27□□□□□ -1.09
CSDE1-213ENST00000530784 DLL3Q9NYJ7 618 aa8.27□□□□□ -1.09
CSDE1-213ENST00000530784 ABT1Q9ULW3 272 aaKnown RBP8.27□□□□□ -1.09
CSDE1-213ENST00000530784 SH2B3Q9UQQ2 575 aa8.27□□□□□ -1.09
CSDE1-213ENST00000530784 ATP6V0A2Q9Y487 856 aa8.27□□□□□ -1.09
CSDE1-213ENST00000530784 ABCC4O15439 1325 aa8.27□□□□□ -1.09
CSDE1-213ENST00000530784 NUP98P52948 1817 aa8.26□□□□□ -1.09
CSDE1-213ENST00000530784 LTBP1Q14766 1721 aa8.26□□□□□ -1.09
CSDE1-213ENST00000530784 ISM1B1AKI9 464 aa8.26□□□□□ -1.09
CSDE1-213ENST00000530784 H0YIZ8 118 aa8.26□□□□□ -1.09
CSDE1-213ENST00000530784 RBMXL2O75526 392 aaKnown RBP8.26□□□□□ -1.09
CSDE1-213ENST00000530784 ONECUT2O95948 504 aa8.26□□□□□ -1.09
CSDE1-213ENST00000530784 ZBED1O96006 694 aa8.26□□□□□ -1.09
CSDE1-213ENST00000530784 HRGP04196 525 aa8.26□□□□□ -1.09
CSDE1-213ENST00000530784 HNRNPCP07910 306 aaKnown RBP eCLIP8.26□□□□□ -1.09
CSDE1-213ENST00000530784 EPS15P42566 896 aa8.26□□□□□ -1.09
CSDE1-213ENST00000530784 PDE1AP54750 535 aa8.26□□□□□ -1.09
CSDE1-213ENST00000530784 RALBP1Q15311 655 aa8.26□□□□□ -1.09
CSDE1-213ENST00000530784 CNGA2Q16280 664 aa8.26□□□□□ -1.09
CSDE1-213ENST00000530784 KIAA0753Q2KHM9 967 aa8.26□□□□□ -1.09
CSDE1-213ENST00000530784 PROSER3Q2NL68 480 aa8.26□□□□□ -1.09
CSDE1-213ENST00000530784 DEFB115Q30KQ5 88 aa8.26□□□□□ -1.09
CSDE1-213ENST00000530784 SLC44A4Q53GD3 710 aa8.26□□□□□ -1.09
CSDE1-213ENST00000530784 ZNF788Q6ZQV5 615 aa8.26□□□□□ -1.09
CSDE1-213ENST00000530784 USP50Q70EL3 339 aaPredicted RBP8.26□□□□□ -1.09
CSDE1-213ENST00000530784 BPIFB1Q8TDL5 484 aa8.26□□□□□ -1.09
CSDE1-213ENST00000530784 LRTOMTQ8WZ04 291 aa8.26□□□□□ -1.09
CSDE1-213ENST00000530784 PPP2R3CQ969Q6 453 aa8.26□□□□□ -1.09
CSDE1-213ENST00000530784 A1CFQ9NQ94 594 aaKnown RBP8.26□□□□□ -1.09
CSDE1-213ENST00000530784 DDX21Q9NR30 783 aaKnown RBP eCLIP8.26□□□□□ -1.09
CSDE1-213ENST00000530784 ZSCAN32Q9NX65 697 aa8.26□□□□□ -1.09
CSDE1-213ENST00000530784 PADI4Q9UM07 663 aa8.26□□□□□ -1.09
CSDE1-213ENST00000530784 TRIM43BA6NCK2 446 aa8.25□□□□□ -1.09
CSDE1-213ENST00000530784 TMPOP42166 694 aaKnown RBP8.25□□□□□ -1.09
CSDE1-213ENST00000530784 FMO1Q01740 532 aa8.25□□□□□ -1.09
CSDE1-213ENST00000530784 AIMP1Q12904 312 aaKnown RBP8.25□□□□□ -1.09
CSDE1-213ENST00000530784 GALEQ14376 348 aa8.25□□□□□ -1.09
CSDE1-213ENST00000530784 C3orf38Q5JPI3 329 aa8.25□□□□□ -1.09
CSDE1-213ENST00000530784 COLEC12Q5KU26 742 aa8.25□□□□□ -1.09
CSDE1-213ENST00000530784 SLC10A5Q5PT55 438 aa8.25□□□□□ -1.09
CSDE1-213ENST00000530784 ANKRD16Q6P6B7 361 aa8.25□□□□□ -1.09
CSDE1-213ENST00000530784 DARS2Q6PI48 645 aaKnown RBP8.25□□□□□ -1.09
CSDE1-213ENST00000530784 COPS6Q7L5N1 327 aa8.25□□□□□ -1.09
CSDE1-213ENST00000530784 LRRC71Q8N4P6 559 aa8.25□□□□□ -1.09
CSDE1-213ENST00000530784 OSCP1Q8WVF1 389 aa8.25□□□□□ -1.09
CSDE1-213ENST00000530784 TRIM43Q96BQ3 446 aaPredicted RBP8.25□□□□□ -1.09
CSDE1-213ENST00000530784 VPS33BQ9H267 617 aa8.25□□□□□ -1.09
CSDE1-213ENST00000530784 PCSK5Q92824 1860 aa8.25□□□□□ -1.09
CSDE1-213ENST00000530784 PCNTO95613 3336 aa8.25□□□□□ -1.09
CSDE1-213ENST00000530784 AOX1Q06278 1338 aa8.25□□□□□ -1.09
CSDE1-213ENST00000530784 SH3TC1Q8TE82 1336 aa8.25□□□□□ -1.09
CSDE1-213ENST00000530784 BBOX1O75936 387 aa8.24□□□□□ -1.09
CSDE1-213ENST00000530784 MYF5P13349 255 aa8.24□□□□□ -1.09
CSDE1-213ENST00000530784 ZKSCAN1P17029 563 aaPredicted RBP8.24□□□□□ -1.09
CSDE1-213ENST00000530784 LBX1P52954 281 aa8.24□□□□□ -1.09
CSDE1-213ENST00000530784 PRKAG1P54619 331 aa8.24□□□□□ -1.09
CSDE1-213ENST00000530784 MAP2K1Q02750 393 aaPredicted RBP8.24□□□□□ -1.09
CSDE1-213ENST00000530784 LY6KQ17RY6 165 aa8.24□□□□□ -1.09
CSDE1-213ENST00000530784 PTCHD3Q3KNS1 767 aa8.24□□□□□ -1.09
CSDE1-213ENST00000530784 PPP4R4Q6NUP7 873 aa8.24□□□□□ -1.09
CSDE1-213ENST00000530784 WDR53Q7Z5U6 358 aaPredicted RBP8.24□□□□□ -1.09
CSDE1-213ENST00000530784 CCDC146Q8IYE0 955 aa8.24□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms