RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 GRTP1Q5TC63 336 aa11.51□□□□□ -0.57
LIMCH1-217ENST00000512946 KCNV1Q6PIU1 500 aa11.51□□□□□ -0.57
LIMCH1-217ENST00000512946 TTC29Q8NA56 475 aaPredicted RBP11.51□□□□□ -0.57
LIMCH1-217ENST00000512946 PNPT1Q8TCS8 783 aaKnown RBP11.51□□□□□ -0.57
LIMCH1-217ENST00000512946 CNKSR1Q969H4 720 aa11.51□□□□□ -0.57
LIMCH1-217ENST00000512946 SEC31BQ9NQW1 1179 aa11.51□□□□□ -0.57
LIMCH1-217ENST00000512946 KLHL1Q9NR64 748 aa11.51□□□□□ -0.57
LIMCH1-217ENST00000512946 PTCH1Q13635 1447 aa11.51□□□□□ -0.57
LIMCH1-217ENST00000512946 RGSL1A5PLK6 1076 aa11.51□□□□□ -0.57
LIMCH1-217ENST00000512946 C2orf81A6NN90 581 aa11.51□□□□□ -0.57
LIMCH1-217ENST00000512946 TRDMT1O14717 391 aaKnown RBP11.51□□□□□ -0.57
LIMCH1-217ENST00000512946 GSTM5P46439 218 aa11.51□□□□□ -0.57
LIMCH1-217ENST00000512946 GNA13Q14344 377 aa11.51□□□□□ -0.57
LIMCH1-217ENST00000512946 TAF5Q15542 800 aa11.51□□□□□ -0.57
LIMCH1-217ENST00000512946 PYDC2Q56P42 97 aa11.51□□□□□ -0.57
LIMCH1-217ENST00000512946 RIPOR1Q6ZS17 1223 aa11.51□□□□□ -0.57
LIMCH1-217ENST00000512946 MYO1HQ8N1T3 1032 aa11.51□□□□□ -0.57
LIMCH1-217ENST00000512946 PJA1Q8NG27 643 aa11.51□□□□□ -0.57
LIMCH1-217ENST00000512946 RNF145Q96MT1 663 aa11.51□□□□□ -0.57
LIMCH1-217ENST00000512946 ZCWPW1Q9H0M4 648 aa11.51□□□□□ -0.57
LIMCH1-217ENST00000512946 NAALADL1Q9UQQ1 740 aa11.51□□□□□ -0.57
LIMCH1-217ENST00000512946 ARPC4-TTLL3A0A0A6YYG9 625 aa11.5□□□□□ -0.57
LIMCH1-217ENST00000512946 PSMD12O00232 456 aaPredicted RBP11.5□□□□□ -0.57
LIMCH1-217ENST00000512946 MAP2K7O14733 419 aa11.5□□□□□ -0.57
LIMCH1-217ENST00000512946 MYL9P24844 172 aa11.5□□□□□ -0.57
LIMCH1-217ENST00000512946 SLC1A6P48664 564 aa11.5□□□□□ -0.57
LIMCH1-217ENST00000512946 C11orf63Q6NUN7 778 aa11.5□□□□□ -0.57
LIMCH1-217ENST00000512946 S100A13Q99584 98 aa11.5□□□□□ -0.57
LIMCH1-217ENST00000512946 GSDMCQ9BYG8 508 aa11.5□□□□□ -0.57
LIMCH1-217ENST00000512946 SIK2Q9H0K1 926 aa11.5□□□□□ -0.57
LIMCH1-217ENST00000512946 KCND1Q9NSA2 647 aa11.5□□□□□ -0.57
LIMCH1-217ENST00000512946 NAGPAQ9UK23 515 aa11.5□□□□□ -0.57
LIMCH1-217ENST00000512946 LSM7Q9UK45 103 aaKnown RBP11.5□□□□□ -0.57
LIMCH1-217ENST00000512946 SYNPO2Q9UMS6 1093 aa11.5□□□□□ -0.57
LIMCH1-217ENST00000512946 CAMTA2O94983 1202 aa11.5□□□□□ -0.57
LIMCH1-217ENST00000512946 RTN3O95197 1032 aaPredicted RBP11.5□□□□□ -0.57
LIMCH1-217ENST00000512946 CYP1A1P04798 512 aaPredicted RBP11.5□□□□□ -0.57
LIMCH1-217ENST00000512946 PCSK2P16519 638 aa11.5□□□□□ -0.57
LIMCH1-217ENST00000512946 DGKDQ16760 1214 aa11.5□□□□□ -0.57
LIMCH1-217ENST00000512946 ADCK2Q7Z695 626 aa11.5□□□□□ -0.57
LIMCH1-217ENST00000512946 NSUN6Q8TEA1 469 aaKnown RBP11.5□□□□□ -0.57
LIMCH1-217ENST00000512946 PRKD2Q9BZL6 878 aa11.5□□□□□ -0.57
LIMCH1-217ENST00000512946 SHCBP1LQ9BZQ2 653 aa11.5□□□□□ -0.57
LIMCH1-217ENST00000512946 SLC7A5P2Q9GIP4 190 aa11.5□□□□□ -0.57
LIMCH1-217ENST00000512946 MAP3K20Q9NYL2 800 aaKnown RBP11.5□□□□□ -0.57
LIMCH1-217ENST00000512946 MKLN1Q9UL63 735 aa11.5□□□□□ -0.57
LIMCH1-217ENST00000512946 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.5□□□□□ -0.57
LIMCH1-217ENST00000512946 CUL7Q14999 1698 aa11.5□□□□□ -0.57
LIMCH1-217ENST00000512946 SMCO3A2RU48 225 aa11.5□□□□□ -0.57
LIMCH1-217ENST00000512946 FAM47E-STBD1D6RA91 191 aa11.5□□□□□ -0.57
LIMCH1-217ENST00000512946 LOC110117498-PIK3R3F6TDL0 507 aa11.5□□□□□ -0.57
LIMCH1-217ENST00000512946 KRT36O76013 467 aa11.5□□□□□ -0.57
LIMCH1-217ENST00000512946 UQCRBP14927 111 aa11.5□□□□□ -0.57
LIMCH1-217ENST00000512946 GARTP22102 1010 aa11.5□□□□□ -0.57
LIMCH1-217ENST00000512946 YWHAQP27348 245 aa11.5□□□□□ -0.57
LIMCH1-217ENST00000512946 PPIL2Q13356 520 aa11.5□□□□□ -0.57
LIMCH1-217ENST00000512946 FAM187BQ17R55 369 aa11.5□□□□□ -0.57
LIMCH1-217ENST00000512946 PACS1Q6VY07 963 aa11.5□□□□□ -0.57
LIMCH1-217ENST00000512946 MREGQ8N565 214 aa11.5□□□□□ -0.57
LIMCH1-217ENST00000512946 C10orf53Q8N6V4 93 aa11.5□□□□□ -0.57
LIMCH1-217ENST00000512946 EMC1Q8N766 993 aa11.5□□□□□ -0.57
LIMCH1-217ENST00000512946 MCFD2Q8NI22 146 aa11.5□□□□□ -0.57
LIMCH1-217ENST00000512946 CKAP2Q8WWK9 683 aa11.5□□□□□ -0.57
LIMCH1-217ENST00000512946 PIK3R3Q92569 461 aa11.5□□□□□ -0.57
LIMCH1-217ENST00000512946 CDRT15Q96T59 188 aa11.5□□□□□ -0.57
LIMCH1-217ENST00000512946 TCF12Q99081 682 aa11.5□□□□□ -0.57
LIMCH1-217ENST00000512946 RIBC2Q9H4K1 309 aa11.5□□□□□ -0.57
LIMCH1-217ENST00000512946 LGR6Q9HBX8 967 aa11.5□□□□□ -0.57
LIMCH1-217ENST00000512946 CHORDC1Q9UHD1 332 aaPredicted RBP11.5□□□□□ -0.57
LIMCH1-217ENST00000512946 ZNF180Q9UJW8 692 aa11.5□□□□□ -0.57
LIMCH1-217ENST00000512946 FAM240BA0A1B0GVZ2 78 aa11.5□□□□□ -0.57
LIMCH1-217ENST00000512946 RIPK2O43353 540 aa11.5□□□□□ -0.57
LIMCH1-217ENST00000512946 DGAT1O75907 488 aa11.5□□□□□ -0.57
LIMCH1-217ENST00000512946 ASS1P00966 412 aaKnown RBP11.5□□□□□ -0.57
LIMCH1-217ENST00000512946 FESP07332 822 aa11.5□□□□□ -0.57
LIMCH1-217ENST00000512946 DARSP14868 501 aaKnown RBP11.5□□□□□ -0.57
LIMCH1-217ENST00000512946 ATF4P18848 351 aaPredicted RBP11.5□□□□□ -0.57
LIMCH1-217ENST00000512946 BGNP21810 368 aa11.5□□□□□ -0.57
LIMCH1-217ENST00000512946 NEK3P51956 506 aa11.5□□□□□ -0.57
LIMCH1-217ENST00000512946 SCN1BQ07699 218 aa11.5□□□□□ -0.57
LIMCH1-217ENST00000512946 MPP3Q13368 585 aa11.5□□□□□ -0.57
LIMCH1-217ENST00000512946 C15orf59Q2T9L4 293 aaPredicted RBP11.5□□□□□ -0.57
LIMCH1-217ENST00000512946 HKDC1Q2TB90 917 aa11.5□□□□□ -0.57
LIMCH1-217ENST00000512946 TFDP3Q5H9I0 405 aa11.5□□□□□ -0.57
LIMCH1-217ENST00000512946 GLRA4Q5JXX5 417 aa11.5□□□□□ -0.57
LIMCH1-217ENST00000512946 EGFLAMQ63HQ2 1017 aa11.5□□□□□ -0.57
LIMCH1-217ENST00000512946 GADL1Q6ZQY3 521 aa11.5□□□□□ -0.57
LIMCH1-217ENST00000512946 FBXO25Q8TCJ0 367 aa11.5□□□□□ -0.57
LIMCH1-217ENST00000512946 TMCO6Q96DC7 493 aa11.5□□□□□ -0.57
LIMCH1-217ENST00000512946 MCEEQ96PE7 176 aa11.5□□□□□ -0.57
LIMCH1-217ENST00000512946 DGCR6LQ9BY27 220 aa11.5□□□□□ -0.57
LIMCH1-217ENST00000512946 DSN1Q9H410 356 aa11.5□□□□□ -0.57
LIMCH1-217ENST00000512946 KLHL11Q9NVR0 708 aa11.5□□□□□ -0.57
LIMCH1-217ENST00000512946 LIMD1Q9UGP4 676 aa11.5□□□□□ -0.57
LIMCH1-217ENST00000512946 FEM1BQ9UK73 627 aa11.5□□□□□ -0.57
LIMCH1-217ENST00000512946 ZNF521Q96K83 1311 aa11.5□□□□□ -0.57
LIMCH1-217ENST00000512946 TRIM38O00635 465 aa11.49□□□□□ -0.57
LIMCH1-217ENST00000512946 SORBS3O60504 671 aa11.49□□□□□ -0.57
LIMCH1-217ENST00000512946 TRMUO75648 421 aaKnown RBP11.49□□□□□ -0.57
LIMCH1-217ENST00000512946 BBOX1O75936 387 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms