RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 LMO2P25791 158 aa18.55■□□□□ 0.56
VIM-206ENST00000487938 CCNFP41002 786 aa18.55■□□□□ 0.56
VIM-206ENST00000487938 NBPF20Q3BBV1 942 aa18.55■□□□□ 0.56
VIM-206ENST00000487938 ACSBG2Q5FVE4 666 aa18.55■□□□□ 0.56
VIM-206ENST00000487938 CASC4Q6P4E1 433 aa18.55■□□□□ 0.56
VIM-206ENST00000487938 NT5DC4Q86YG4 428 aa18.55■□□□□ 0.56
VIM-206ENST00000487938 TREML1Q86YW5 311 aa18.55■□□□□ 0.56
VIM-206ENST00000487938 FBXO27Q8NI29 283 aa18.55■□□□□ 0.56
VIM-206ENST00000487938 CSPG4P5Q96PW8 444 aa18.55■□□□□ 0.56
VIM-206ENST00000487938 APOL6Q9BWW8 343 aa18.55■□□□□ 0.56
VIM-206ENST00000487938 SDAD1Q9NVU7 687 aaKnown RBP eCLIP18.55■□□□□ 0.562e-33■■□□□ 11.5
VIM-206ENST00000487938 DTLQ9NZJ0 730 aa18.55■□□□□ 0.56
VIM-206ENST00000487938 SIRPGQ9P1W8 387 aa18.55■□□□□ 0.56
VIM-206ENST00000487938 KRT36O76013 467 aa18.54■□□□□ 0.56
VIM-206ENST00000487938 SETSIPP0DME0 302 aa18.54■□□□□ 0.56
VIM-206ENST00000487938 ADORA2AP29274 412 aa18.54■□□□□ 0.56
VIM-206ENST00000487938 HOXA11P31270 313 aaPredicted RBP18.54■□□□□ 0.56
VIM-206ENST00000487938 AQP5P55064 265 aa18.54■□□□□ 0.56
VIM-206ENST00000487938 GRIK4Q16099 956 aa18.54■□□□□ 0.56
VIM-206ENST00000487938 HEATR6Q6AI08 1181 aaKnown RBP18.54■□□□□ 0.56
VIM-206ENST00000487938 C16orf46Q6P387 395 aa18.54■□□□□ 0.56
VIM-206ENST00000487938 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP18.54■□□□□ 0.566e-7■■■■■ 139.2
VIM-206ENST00000487938 DDX51Q8N8A6 666 aaKnown RBP eCLIP18.54■□□□□ 0.56
VIM-206ENST00000487938 PPTC7Q8NI37 304 aa18.54■□□□□ 0.56
VIM-206ENST00000487938 LGMNQ99538 433 aa18.54■□□□□ 0.56
VIM-206ENST00000487938 CEP41Q9BYV8 373 aa18.54■□□□□ 0.56
VIM-206ENST00000487938 FAM49AQ9H0Q0 323 aaPredicted RBP18.54■□□□□ 0.56
VIM-206ENST00000487938 CDHR5Q9HBB8 845 aa18.54■□□□□ 0.56
VIM-206ENST00000487938 ARHGEF4Q9NR80 690 aa18.54■□□□□ 0.56
VIM-206ENST00000487938 KCNK4Q9NYG8 393 aa18.54■□□□□ 0.56
VIM-206ENST00000487938 DONSONQ9NYP3 566 aa18.54■□□□□ 0.56
VIM-206ENST00000487938 GJD2Q9UKL4 321 aa18.54■□□□□ 0.56
VIM-206ENST00000487938 RPL26L1Q9UNX3 145 aaKnown RBP18.54■□□□□ 0.56
VIM-206ENST00000487938 KCNH4Q9UQ05 1017 aa18.54■□□□□ 0.56
VIM-206ENST00000487938 B2RBV5 119 aa18.54■□□□□ 0.56
VIM-206ENST00000487938 RARBP10826 455 aa18.54■□□□□ 0.56
VIM-206ENST00000487938 TPSB2P20231 275 aa18.54■□□□□ 0.56
VIM-206ENST00000487938 OCRLQ01968 901 aa18.54■□□□□ 0.56
VIM-206ENST00000487938 RCN1Q15293 331 aa18.54■□□□□ 0.56
VIM-206ENST00000487938 TPSAB1Q15661 275 aa18.54■□□□□ 0.56
VIM-206ENST00000487938 TEX44Q53QW1 395 aa18.54■□□□□ 0.56
VIM-206ENST00000487938 ZNF618Q5T7W0 954 aa18.54■□□□□ 0.56
VIM-206ENST00000487938 NCBP2-AS2Q69YL0 99 aa18.54■□□□□ 0.56
VIM-206ENST00000487938 TRIM42Q8IWZ5 723 aa18.54■□□□□ 0.56
VIM-206ENST00000487938 ADGRF2Q8IZF7 708 aa18.54■□□□□ 0.56
VIM-206ENST00000487938 STKLD1Q8NE28 680 aa18.54■□□□□ 0.56
VIM-206ENST00000487938 MICAL1Q8TDZ2 1067 aa18.54■□□□□ 0.56
VIM-206ENST00000487938 MTBPQ96DY7 904 aa18.54■□□□□ 0.56
VIM-206ENST00000487938 C7orf26Q96N11 449 aa18.54■□□□□ 0.56
VIM-206ENST00000487938 C11orf84Q9BUA3 381 aaPredicted RBP18.54■□□□□ 0.56
VIM-206ENST00000487938 TMPRSS4Q9NRS4 437 aa18.54■□□□□ 0.56
VIM-206ENST00000487938 LMNAP02545 664 aaKnown RBP18.53■□□□□ 0.56
VIM-206ENST00000487938 GSTA2P09210 222 aa18.53■□□□□ 0.56
VIM-206ENST00000487938 VAV1P15498 845 aa18.53■□□□□ 0.56
VIM-206ENST00000487938 CRHR1P34998 444 aa18.53■□□□□ 0.56
VIM-206ENST00000487938 PTPN9P43378 593 aa18.53■□□□□ 0.56
VIM-206ENST00000487938 CCDC6Q16204 474 aa18.53■□□□□ 0.56
VIM-206ENST00000487938 BSPRYQ5W0U4 402 aa18.53■□□□□ 0.56
VIM-206ENST00000487938 FAM131BQ86XD5 332 aa18.53■□□□□ 0.56
VIM-206ENST00000487938 TEX9Q8N6V9 391 aa18.53■□□□□ 0.56
VIM-206ENST00000487938 DTX3LQ8TDB6 740 aa18.53■□□□□ 0.56
VIM-206ENST00000487938 SH3TC2Q8TF17 1288 aa18.53■□□□□ 0.56
VIM-206ENST00000487938 CENPIQ92674 756 aaPredicted RBP18.53■□□□□ 0.56
VIM-206ENST00000487938 QKIQ96PU8 341 aaKnown RBP eCLIP18.53■□□□□ 0.56
VIM-206ENST00000487938 SETD4Q9NVD3 440 aa18.53■□□□□ 0.56
VIM-206ENST00000487938 RNF181Q9P0P0 153 aa18.53■□□□□ 0.56
VIM-206ENST00000487938 BPGMP07738 259 aa18.53■□□□□ 0.56
VIM-206ENST00000487938 ZFXP17010 805 aaPredicted RBP18.53■□□□□ 0.56
VIM-206ENST00000487938 AKAP5P24588 427 aa18.53■□□□□ 0.56
VIM-206ENST00000487938 NR2C2P49116 596 aa18.53■□□□□ 0.56
VIM-206ENST00000487938 ALDH18A1P54886 795 aaKnown RBP18.53■□□□□ 0.56
VIM-206ENST00000487938 SNX16P57768 344 aa18.53■□□□□ 0.56
VIM-206ENST00000487938 RCN2Q14257 317 aa18.53■□□□□ 0.56
VIM-206ENST00000487938 C4orf22Q6V702 233 aa18.53■□□□□ 0.56
VIM-206ENST00000487938 ZDHHC17Q8IUH5 632 aa18.53■□□□□ 0.56
VIM-206ENST00000487938 CRLF3Q8IUI8 442 aa18.53■□□□□ 0.56
VIM-206ENST00000487938 PDCD7Q8N8D1 485 aaKnown RBP18.53■□□□□ 0.56
VIM-206ENST00000487938 HTR3CQ8WXA8 447 aa18.53■□□□□ 0.56
VIM-206ENST00000487938 FAM124BQ9H5Z6 455 aaPredicted RBP18.53■□□□□ 0.56
VIM-206ENST00000487938 SEC23IPQ9Y6Y8 1000 aaKnown RBP18.53■□□□□ 0.56
VIM-206ENST00000487938 SYNJ2BP-COX16A0A087WUM0 186 aa18.52■□□□□ 0.56
VIM-206ENST00000487938 H3BRJ5 948 aa18.52■□□□□ 0.56
VIM-206ENST00000487938 PGM1P36871 562 aa18.52■□□□□ 0.56
VIM-206ENST00000487938 SESN2P58004 480 aaPredicted RBP18.52■□□□□ 0.56
VIM-206ENST00000487938 KDSRQ06136 332 aa18.52■□□□□ 0.56
VIM-206ENST00000487938 PPIL2Q13356 520 aa18.52■□□□□ 0.56
VIM-206ENST00000487938 ZBTB6Q15916 424 aa18.52■□□□□ 0.56
VIM-206ENST00000487938 COLGALT1Q8NBJ5 622 aa18.52■□□□□ 0.56
VIM-206ENST00000487938 SMC1BQ8NDV3 1235 aa18.52■□□□□ 0.56
VIM-206ENST00000487938 BEST2Q8NFU1 509 aa18.52■□□□□ 0.56
VIM-206ENST00000487938 TFB1MQ8WVM0 346 aaKnown RBP18.52■□□□□ 0.56
VIM-206ENST00000487938 SNX27Q96L92 541 aa18.52■□□□□ 0.56
VIM-206ENST00000487938 RILPQ96NA2 401 aa18.52■□□□□ 0.56
VIM-206ENST00000487938 MOCS1Q9NZB8 636 aa18.52■□□□□ 0.56
VIM-206ENST00000487938 COX16Q9P0S2 106 aa18.52■□□□□ 0.56
VIM-206ENST00000487938 MYO18AQ92614 2054 aaKnown RBP18.52■□□□□ 0.56
VIM-206ENST00000487938 PDHA1P08559 390 aa18.52■□□□□ 0.55
VIM-206ENST00000487938 GNL1P36915 607 aaPredicted RBP18.52■□□□□ 0.55
VIM-206ENST00000487938 BST2Q10589 180 aaKnown RBP18.52■□□□□ 0.55
VIM-206ENST00000487938 STX3Q13277 289 aa18.52■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 166 ms