RNA–Protein interactions for RNA: ENST00000483922.1

UBR4-213, Transcript of ubiquitin protein ligase E3 component n-recognin 4, human

TSL 5

Gene UBR4, Length 543 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR4-213	ENST00000483922	C10orf120	Q5SQS8	335 aa		13.55	□□□□□ -0.24
UBR4-213	ENST00000483922	LAYN	Q6UX15	382 aa		13.55	□□□□□ -0.24
UBR4-213	ENST00000483922	UNC13D	Q70J99	1090 aa		13.55	□□□□□ -0.24
UBR4-213	ENST00000483922	FAM124A	Q86V42	546 aa		13.55	□□□□□ -0.24
UBR4-213	ENST00000483922	ZNF276	Q8N554	614 aa		13.55	□□□□□ -0.24
UBR4-213	ENST00000483922	HNRNPAB	Q99729	332 aa	Known RBP	13.55	□□□□□ -0.24
UBR4-213	ENST00000483922	NUP58	Q9BVL2	599 aa		13.55	□□□□□ -0.24
UBR4-213	ENST00000483922	UTP3	Q9NQZ2	479 aa	Known RBP eCLIP	13.55	□□□□□ -0.24
UBR4-213	ENST00000483922	PCDHGB2	Q9Y5G2	931 aa		13.55	□□□□□ -0.24
UBR4-213	ENST00000483922	USP3	Q9Y6I4	520 aa		13.55	□□□□□ -0.24
UBR4-213	ENST00000483922	NUMA1	Q14980	2115 aa		13.54	□□□□□ -0.24
UBR4-213	ENST00000483922	C1QL1	O75973	258 aa		13.54	□□□□□ -0.24
UBR4-213	ENST00000483922	OXTR	P30559	389 aa		13.54	□□□□□ -0.24
UBR4-213	ENST00000483922	ZNF132	P52740	706 aa		13.54	□□□□□ -0.24
UBR4-213	ENST00000483922	CUL4B	Q13620	913 aa		13.54	□□□□□ -0.24
UBR4-213	ENST00000483922	KNOP1	Q1ED39	458 aa	Known RBP	13.54	□□□□□ -0.24
UBR4-213	ENST00000483922	SGSM1	Q2NKQ1	1148 aa		13.54	□□□□□ -0.24
UBR4-213	ENST00000483922	ZACN	Q401N2	412 aa		13.54	□□□□□ -0.24
UBR4-213	ENST00000483922	ERICH6B	Q5W0A0	696 aa		13.54	□□□□□ -0.24
UBR4-213	ENST00000483922	SV2A	Q7L0J3	742 aa		13.54	□□□□□ -0.24
UBR4-213	ENST00000483922	UNC93A	Q86WB7	457 aa		13.54	□□□□□ -0.24
UBR4-213	ENST00000483922	ZC3H3	Q8IXZ2	948 aa	Known RBP	13.54	□□□□□ -0.24
UBR4-213	ENST00000483922	PRCC	Q92733	491 aa	Predicted RBP	13.54	□□□□□ -0.24
UBR4-213	ENST00000483922	CYFIP2	Q96F07	1278 aa		13.54	□□□□□ -0.24
UBR4-213	ENST00000483922	APOBEC3G	Q9HC16	384 aa	Known RBP	13.54	□□□□□ -0.24
UBR4-213	ENST00000483922	TFIP11	Q9UBB9	837 aa	Known RBP	13.54	□□□□□ -0.24
UBR4-213	ENST00000483922	ANKRD6	Q9Y2G4	727 aa		13.54	□□□□□ -0.24
UBR4-213	ENST00000483922	TMEM131	Q92545	1883 aa		13.54	□□□□□ -0.24
UBR4-213	ENST00000483922	CKAP5	Q14008	2032 aa		13.53	□□□□□ -0.24
UBR4-213	ENST00000483922		H0Y8X5	98 aa		13.53	□□□□□ -0.24
UBR4-213	ENST00000483922	FLRT2	O43155	660 aa		13.53	□□□□□ -0.24
UBR4-213	ENST00000483922	KLRC4	O43908	158 aa		13.53	□□□□□ -0.24
UBR4-213	ENST00000483922	CER1	O95813	267 aa		13.53	□□□□□ -0.24
UBR4-213	ENST00000483922	ASS1	P00966	412 aa	Known RBP	13.53	□□□□□ -0.24
UBR4-213	ENST00000483922	FAM200B	P0CF97	657 aa		13.53	□□□□□ -0.24
UBR4-213	ENST00000483922	ITPKB	P27987	946 aa		13.53	□□□□□ -0.24
UBR4-213	ENST00000483922	STK4	Q13043	487 aa		13.53	□□□□□ -0.24
UBR4-213	ENST00000483922	STARD3	Q14849	445 aa		13.53	□□□□□ -0.24
UBR4-213	ENST00000483922	PPP1R26	Q5T8A7	1209 aa	Predicted RBP	13.53	□□□□□ -0.24
UBR4-213	ENST00000483922	IL27RA	Q6UWB1	636 aa		13.53	□□□□□ -0.24
UBR4-213	ENST00000483922	CCDC186	Q7Z3E2	898 aa		13.53	□□□□□ -0.24
UBR4-213	ENST00000483922	GRAMD1C	Q8IYS0	662 aa		13.53	□□□□□ -0.24
UBR4-213	ENST00000483922	ZNF366	Q8N895	744 aa		13.53	□□□□□ -0.24
UBR4-213	ENST00000483922	CDC6	Q99741	560 aa		13.53	□□□□□ -0.24
UBR4-213	ENST00000483922	TM9SF3	Q9HD45	589 aa		13.53	□□□□□ -0.24
UBR4-213	ENST00000483922	NAGPA	Q9UK23	515 aa		13.53	□□□□□ -0.24
UBR4-213	ENST00000483922	ZBTB32	Q9Y2Y4	487 aa	Predicted RBP	13.53	□□□□□ -0.24
UBR4-213	ENST00000483922	PCDHA5	Q9Y5H7	936 aa		13.53	□□□□□ -0.24
UBR4-213	ENST00000483922	UBE4B	O95155	1302 aa		13.53	□□□□□ -0.24
UBR4-213	ENST00000483922	CBX4	O00257	560 aa		13.52	□□□□□ -0.25
UBR4-213	ENST00000483922	NPC1	O15118	1278 aa		13.52	□□□□□ -0.25
UBR4-213	ENST00000483922	TSPAN3	O60637	253 aa		13.52	□□□□□ -0.25
UBR4-213	ENST00000483922	EPHX1	P07099	455 aa		13.52	□□□□□ -0.25
UBR4-213	ENST00000483922	CORO1A	P31146	461 aa	Known RBP	13.52	□□□□□ -0.25
UBR4-213	ENST00000483922	INCA1	Q0VD86	236 aa		13.52	□□□□□ -0.25
UBR4-213	ENST00000483922	EFEMP1	Q12805	493 aa		13.52	□□□□□ -0.25
UBR4-213	ENST00000483922	CAMK2G	Q13555	558 aa	Predicted RBP	13.52	□□□□□ -0.25
UBR4-213	ENST00000483922	PRAMEF14	Q5SWL7	426 aa		13.52	□□□□□ -0.25
UBR4-213	ENST00000483922	DHRS13	Q6UX07	377 aa		13.52	□□□□□ -0.25
UBR4-213	ENST00000483922	BHLHA9	Q7RTU4	235 aa		13.52	□□□□□ -0.25
UBR4-213	ENST00000483922	DENND1C	Q8IV53	801 aa		13.52	□□□□□ -0.25
UBR4-213	ENST00000483922	SCUBE3	Q8IX30	993 aa		13.52	□□□□□ -0.25
UBR4-213	ENST00000483922	FAM217A	Q8IXS0	508 aa		13.52	□□□□□ -0.25
UBR4-213	ENST00000483922	KIAA0895	Q8NCT3	520 aa		13.52	□□□□□ -0.25
UBR4-213	ENST00000483922	TMEM174	Q8WUU8	243 aa		13.52	□□□□□ -0.25
UBR4-213	ENST00000483922	NDRG1	Q92597	394 aa	Known RBP	13.52	□□□□□ -0.25
UBR4-213	ENST00000483922	COL26A1	Q96A83	441 aa		13.52	□□□□□ -0.25
UBR4-213	ENST00000483922	BIRC7	Q96CA5	298 aa		13.52	□□□□□ -0.25
UBR4-213	ENST00000483922	LRRC27	Q9C0I9	530 aa		13.52	□□□□□ -0.25
UBR4-213	ENST00000483922	TMEM245	Q9H330	911 aa		13.52	□□□□□ -0.25
UBR4-213	ENST00000483922	KCTD10	Q9H3F6	313 aa		13.52	□□□□□ -0.25
UBR4-213	ENST00000483922	CUEDC2	Q9H467	287 aa		13.52	□□□□□ -0.25
UBR4-213	ENST00000483922	EBF2	Q9HAK2	575 aa		13.52	□□□□□ -0.25
UBR4-213	ENST00000483922	CLIC5	Q9NZA1	410 aa		13.52	□□□□□ -0.25
UBR4-213	ENST00000483922	RAI2	Q9Y5P3	530 aa		13.52	□□□□□ -0.25
UBR4-213	ENST00000483922	CABIN1	Q9Y6J0	2220 aa		13.52	□□□□□ -0.25
UBR4-213	ENST00000483922	MGA	Q8IWI9	3026 aa		13.52	□□□□□ -0.25
UBR4-213	ENST00000483922	ATM	Q13315	3056 aa		13.51	□□□□□ -0.25
UBR4-213	ENST00000483922	MUC22	E2RYF6	1773 aa	Predicted RBP	13.51	□□□□□ -0.25
UBR4-213	ENST00000483922	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	13.51	□□□□□ -0.25
UBR4-213	ENST00000483922	PLK4	O00444	970 aa		13.51	□□□□□ -0.25
UBR4-213	ENST00000483922	SPTLC2	O15270	562 aa		13.51	□□□□□ -0.25
UBR4-213	ENST00000483922	POLR2D	O15514	142 aa	Known RBP	13.51	□□□□□ -0.25
UBR4-213	ENST00000483922	TNFSF14	O43557	240 aa		13.51	□□□□□ -0.25
UBR4-213	ENST00000483922	TLX3	O43711	291 aa	Predicted RBP	13.51	□□□□□ -0.25
UBR4-213	ENST00000483922	SYNCRIP	O60506	623 aa	Known RBP	13.51	□□□□□ -0.25
UBR4-213	ENST00000483922	PPP6R2	O75170	966 aa		13.51	□□□□□ -0.25
UBR4-213	ENST00000483922	HLA-DRA	P01903	254 aa		13.51	□□□□□ -0.25
UBR4-213	ENST00000483922	HLA-F	P30511	346 aa		13.51	□□□□□ -0.25
UBR4-213	ENST00000483922	CTSK	P43235	329 aa		13.51	□□□□□ -0.25
UBR4-213	ENST00000483922	AFF3	P51826	1226 aa	Known RBP	13.51	□□□□□ -0.25
UBR4-213	ENST00000483922	AP3M2	P53677	418 aa		13.51	□□□□□ -0.25
UBR4-213	ENST00000483922	RPS14	P62263	151 aa	Known RBP	13.51	□□□□□ -0.25
UBR4-213	ENST00000483922	IL9R	Q01113	521 aa		13.51	□□□□□ -0.25
UBR4-213	ENST00000483922	AMPD3	Q01432	767 aa		13.51	□□□□□ -0.25
UBR4-213	ENST00000483922	GOLGA8F	Q08AF8	430 aa		13.51	□□□□□ -0.25
UBR4-213	ENST00000483922	GOLGA8DP	Q0D2H9	430 aa		13.51	□□□□□ -0.25
UBR4-213	ENST00000483922	SHB	Q15464	509 aa		13.51	□□□□□ -0.25
UBR4-213	ENST00000483922	ANKS1B	Q7Z6G8	1248 aa		13.51	□□□□□ -0.25
UBR4-213	ENST00000483922	SLC9A9	Q8IVB4	645 aa		13.51	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms