RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 NCOA5Q9HCD5 579 aaKnown RBP5.1□□□□□ -1.59
USP4-209ENST00000475873 ZSWIM6Q9HCJ5 1215 aa5.1□□□□□ -1.59
USP4-209ENST00000475873 CRTAC1Q9NQ79 661 aa5.1□□□□□ -1.59
USP4-209ENST00000475873 SH3GLB2Q9NR46 395 aa5.1□□□□□ -1.59
USP4-209ENST00000475873 AASDHPPTQ9NRN7 309 aa5.1□□□□□ -1.59
USP4-209ENST00000475873 GJB4Q9NTQ9 266 aa5.1□□□□□ -1.59
USP4-209ENST00000475873 CUEDC1Q9NWM3 386 aaPredicted RBP5.1□□□□□ -1.59
USP4-209ENST00000475873 EIF2AK3Q9NZJ5 1116 aaKnown RBP5.1□□□□□ -1.59
USP4-209ENST00000475873 DKK3Q9UBP4 350 aa5.1□□□□□ -1.59
USP4-209ENST00000475873 ZBTB47Q9UFB7 747 aaPredicted RBP5.1□□□□□ -1.59
USP4-209ENST00000475873 TUBD1Q9UJT1 453 aa5.1□□□□□ -1.59
USP4-209ENST00000475873 DSEQ9UL01 958 aa5.1□□□□□ -1.59
USP4-209ENST00000475873 KCNJ14Q9UNX9 436 aa5.1□□□□□ -1.59
USP4-209ENST00000475873 NME7Q9Y5B8 376 aa5.1□□□□□ -1.59
USP4-209ENST00000475873 PCDHGA7Q9Y5G6 932 aa5.1□□□□□ -1.59
USP4-209ENST00000475873 JMJD1CQ15652 2540 aa5.09□□□□□ -1.59
USP4-209ENST00000475873 POLEQ07864 2286 aa5.09□□□□□ -1.59
USP4-209ENST00000475873 ATRQ13535 2644 aa5.09□□□□□ -1.59
USP4-209ENST00000475873 A0A087X0B3 334 aa5.09□□□□□ -1.59
USP4-209ENST00000475873 FAM47DPA6NHR8 397 aa5.09□□□□□ -1.59
USP4-209ENST00000475873 CCDC169A6NNP5 214 aa5.09□□□□□ -1.59
USP4-209ENST00000475873 SLC16A4O15374 487 aa5.09□□□□□ -1.59
USP4-209ENST00000475873 SYNCRIPO60506 623 aaKnown RBP5.09□□□□□ -1.59
USP4-209ENST00000475873 EPHX1P07099 455 aa5.09□□□□□ -1.59
USP4-209ENST00000475873 GP1BAP07359 652 aa5.09□□□□□ -1.59
USP4-209ENST00000475873 LIPCP11150 499 aa5.09□□□□□ -1.59
USP4-209ENST00000475873 PDIA4P13667 645 aaKnown RBP5.09□□□□□ -1.59
USP4-209ENST00000475873 IFNAR1P17181 557 aa5.09□□□□□ -1.59
USP4-209ENST00000475873 BDNFP23560 247 aa5.09□□□□□ -1.59
USP4-209ENST00000475873 MLLT3P42568 568 aaPredicted RBP5.09□□□□□ -1.59
USP4-209ENST00000475873 MAGEA11P43364 429 aa5.09□□□□□ -1.59
USP4-209ENST00000475873 ZNF132P52740 706 aa5.09□□□□□ -1.59
USP4-209ENST00000475873 WNT7BP56706 349 aa5.09□□□□□ -1.59
USP4-209ENST00000475873 PSMC1P62191 440 aaKnown RBP5.09□□□□□ -1.59
USP4-209ENST00000475873 PPP2CBP62714 309 aa5.09□□□□□ -1.59
USP4-209ENST00000475873 PPP2CAP67775 309 aa5.09□□□□□ -1.59
USP4-209ENST00000475873 TSPY1Q01534 308 aa5.09□□□□□ -1.59
USP4-209ENST00000475873 NUCB1Q02818 461 aa5.09□□□□□ -1.59
USP4-209ENST00000475873 PPP2R3AQ06190 1150 aa5.09□□□□□ -1.59
USP4-209ENST00000475873 PERM1Q5SV97 790 aa5.09□□□□□ -1.59
USP4-209ENST00000475873 GUSBP11Q6P575 273 aa5.09□□□□□ -1.59
USP4-209ENST00000475873 FAM171BQ6P995 826 aa5.09□□□□□ -1.59
USP4-209ENST00000475873 BORAQ6PGQ7 559 aa5.09□□□□□ -1.59
USP4-209ENST00000475873 DENND5BQ6ZUT9 1274 aa5.09□□□□□ -1.59
USP4-209ENST00000475873 NUDT18Q6ZVK8 323 aa5.09□□□□□ -1.59
USP4-209ENST00000475873 HTR3DQ70Z44 454 aa5.09□□□□□ -1.59
USP4-209ENST00000475873 ATCAYQ86WG3 371 aa5.09□□□□□ -1.59
USP4-209ENST00000475873 METTL23Q86XA0 190 aa5.09□□□□□ -1.59
USP4-209ENST00000475873 ZFAND4Q86XD8 727 aa5.09□□□□□ -1.59
USP4-209ENST00000475873 DDX42Q86XP3 938 aaKnown RBP eCLIP5.09□□□□□ -1.59
USP4-209ENST00000475873 ZC3H3Q8IXZ2 948 aaKnown RBP5.09□□□□□ -1.59
USP4-209ENST00000475873 SLFN12Q8IYM2 578 aa5.09□□□□□ -1.59
USP4-209ENST00000475873 RASEFQ8IZ41 740 aa5.09□□□□□ -1.59
USP4-209ENST00000475873 ARL14Q8N4G2 192 aa5.09□□□□□ -1.59
USP4-209ENST00000475873 NSUN7Q8NE18 718 aaKnown RBP5.09□□□□□ -1.59
USP4-209ENST00000475873 WDR36Q8NI36 951 aaKnown RBP5.09□□□□□ -1.59
USP4-209ENST00000475873 C9orf43Q8TAL5 461 aaPredicted RBP5.09□□□□□ -1.59
USP4-209ENST00000475873 CXorf38Q8TB03 319 aa5.09□□□□□ -1.59
USP4-209ENST00000475873 IFI44Q8TCB0 444 aa5.09□□□□□ -1.59
USP4-209ENST00000475873 MAPK15Q8TD08 544 aa5.09□□□□□ -1.59
USP4-209ENST00000475873 HPS3Q969F9 1004 aa5.09□□□□□ -1.59
USP4-209ENST00000475873 MYLPFQ96A32 169 aa5.09□□□□□ -1.59
USP4-209ENST00000475873 FUBP3Q96I24 572 aaKnown RBP eCLIP5.09□□□□□ -1.59
USP4-209ENST00000475873 IFT74Q96LB3 600 aa5.09□□□□□ -1.59
USP4-209ENST00000475873 ACBD6Q9BR61 282 aa5.09□□□□□ -1.59
USP4-209ENST00000475873 TMEM60Q9H2L4 133 aa5.09□□□□□ -1.59
USP4-209ENST00000475873 DDX43Q9NXZ2 648 aaKnown RBP5.09□□□□□ -1.59
USP4-209ENST00000475873 FOXJ2Q9P0K8 574 aa5.09□□□□□ -1.59
USP4-209ENST00000475873 ERRFI1Q9UJM3 462 aaPredicted RBP5.09□□□□□ -1.59
USP4-209ENST00000475873 NAP1L2Q9ULW6 460 aaPredicted RBP5.09□□□□□ -1.59
USP4-209ENST00000475873 PCDHA12Q9UN75 941 aa5.09□□□□□ -1.59
USP4-209ENST00000475873 CA5BQ9Y2D0 317 aa5.09□□□□□ -1.59
USP4-209ENST00000475873 SLC27A6Q9Y2P4 619 aa5.09□□□□□ -1.59
USP4-209ENST00000475873 DAAM1Q9Y4D1 1078 aa5.09□□□□□ -1.59
USP4-209ENST00000475873 CCDC187A0A096LP49 1063 aa5.08□□□□□ -1.6
USP4-209ENST00000475873 ARHGEF35A5YM69 484 aa5.08□□□□□ -1.6
USP4-209ENST00000475873 PRR19A6NJB7 356 aa5.08□□□□□ -1.6
USP4-209ENST00000475873 SFI1A8K8P3 1242 aa5.08□□□□□ -1.6
USP4-209ENST00000475873 KPNA7A9QM74 516 aa5.08□□□□□ -1.6
USP4-209ENST00000475873 F8VP50 259 aa5.08□□□□□ -1.6
USP4-209ENST00000475873 GABRDO14764 452 aa5.08□□□□□ -1.6
USP4-209ENST00000475873 PLD2O14939 933 aa5.08□□□□□ -1.6
USP4-209ENST00000475873 NEBLO76041 1014 aa5.08□□□□□ -1.6
USP4-209ENST00000475873 TBX18O95935 607 aa5.08□□□□□ -1.6
USP4-209ENST00000475873 PENKP01210 267 aaPredicted RBP5.08□□□□□ -1.6
USP4-209ENST00000475873 LMO2P25791 158 aa5.08□□□□□ -1.6
USP4-209ENST00000475873 UGT1A5P35504 534 aa5.08□□□□□ -1.6
USP4-209ENST00000475873 ETV5P41161 510 aa5.08□□□□□ -1.6
USP4-209ENST00000475873 TAF6P49848 677 aa5.08□□□□□ -1.6
USP4-209ENST00000475873 ARSDP51689 593 aa5.08□□□□□ -1.6
USP4-209ENST00000475873 CDH8P55286 799 aa5.08□□□□□ -1.6
USP4-209ENST00000475873 NOP14P78316 857 aaKnown RBP5.08□□□□□ -1.6
USP4-209ENST00000475873 MRPL49Q13405 166 aaKnown RBP5.08□□□□□ -1.6
USP4-209ENST00000475873 MANEAQ5SRI9 462 aa5.08□□□□□ -1.6
USP4-209ENST00000475873 FYB2Q5VWT5 728 aa5.08□□□□□ -1.6
USP4-209ENST00000475873 SLC39A4Q6P5W5 647 aa5.08□□□□□ -1.6
USP4-209ENST00000475873 Q6ZNB5 142 aa5.08□□□□□ -1.6
USP4-209ENST00000475873 PIK3AP1Q6ZUJ8 805 aa5.08□□□□□ -1.6
USP4-209ENST00000475873 TMPRSS9Q7Z410 1059 aa5.08□□□□□ -1.6
USP4-209ENST00000475873 XYLT1Q86Y38 959 aa5.08□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms