RNA–Protein interactions for RNA: ENST00000427526.6

LIG1-202, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,027 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-202ENST00000427526 KCNK4Q9NYG8 393 aa14.79□□□□□ -0.04
LIG1-202ENST00000427526 ZNF487B1APH4 448 aa14.78□□□□□ -0.04
LIG1-202ENST00000427526 NEBLO76041 1014 aa14.78□□□□□ -0.04
LIG1-202ENST00000427526 CSH1P0DML2 217 aa14.78□□□□□ -0.04
LIG1-202ENST00000427526 CSH2P0DML3 217 aa14.78□□□□□ -0.04
LIG1-202ENST00000427526 SLC6A3Q01959 620 aa14.78□□□□□ -0.04
LIG1-202ENST00000427526 BST1Q10588 318 aa14.78□□□□□ -0.04
LIG1-202ENST00000427526 GOLGA7BQ2TAP0 167 aa14.78□□□□□ -0.04
LIG1-202ENST00000427526 TTC30AQ86WT1 665 aa14.78□□□□□ -0.04
LIG1-202ENST00000427526 COL1A2P08123 1366 aa14.78□□□□□ -0.04
LIG1-202ENST00000427526 FAM159BA6NKW6 160 aa14.78□□□□□ -0.04
LIG1-202ENST00000427526 CAPN14A8MX76 684 aa14.78□□□□□ -0.04
LIG1-202ENST00000427526 TSPAN1O60635 241 aa14.78□□□□□ -0.04
LIG1-202ENST00000427526 METTL18O95568 372 aa14.78□□□□□ -0.04
LIG1-202ENST00000427526 HOXD8P13378 290 aaPredicted RBP14.78□□□□□ -0.04
LIG1-202ENST00000427526 ZNF157P51786 506 aaPredicted RBP14.78□□□□□ -0.04
LIG1-202ENST00000427526 HDAC4P56524 1084 aa14.78□□□□□ -0.04
LIG1-202ENST00000427526 OCRLQ01968 901 aa14.78□□□□□ -0.04
LIG1-202ENST00000427526 STILQ15468 1287 aa14.78□□□□□ -0.04
LIG1-202ENST00000427526 CCL14Q16627 93 aa14.78□□□□□ -0.04
LIG1-202ENST00000427526 ACSBG2Q5FVE4 666 aa14.78□□□□□ -0.04
LIG1-202ENST00000427526 MORN1Q5T089 497 aa14.78□□□□□ -0.04
LIG1-202ENST00000427526 C4orf22Q6V702 233 aa14.78□□□□□ -0.04
LIG1-202ENST00000427526 APBB1IPQ7Z5R6 666 aaPredicted RBP14.78□□□□□ -0.04
LIG1-202ENST00000427526 ALYREFQ86V81 257 aaKnown RBP14.78□□□□□ -0.04
LIG1-202ENST00000427526 SCUBE3Q8IX30 993 aa14.78□□□□□ -0.04
LIG1-202ENST00000427526 SLC35F5Q8WV83 523 aa14.78□□□□□ -0.04
LIG1-202ENST00000427526 CORO1CQ9ULV4 474 aaPredicted RBP14.78□□□□□ -0.04
LIG1-202ENST00000427526 ZSWIM8A7E2V4 1837 aa14.78□□□□□ -0.04
LIG1-202ENST00000427526 ANKRD33BA6NCL7 494 aa14.77□□□□□ -0.04
LIG1-202ENST00000427526 A6NHS1 94 aa14.77□□□□□ -0.04
LIG1-202ENST00000427526 GCATO75600 419 aa14.77□□□□□ -0.04
LIG1-202ENST00000427526 ESRRAP11474 423 aaPredicted RBP14.77□□□□□ -0.04
LIG1-202ENST00000427526 SDC4P31431 198 aa14.77□□□□□ -0.04
LIG1-202ENST00000427526 SLC10A2Q12908 348 aaPredicted RBP14.77□□□□□ -0.04
LIG1-202ENST00000427526 KYAT1Q16773 422 aa14.77□□□□□ -0.04
LIG1-202ENST00000427526 TEX44Q53QW1 395 aa14.77□□□□□ -0.04
LIG1-202ENST00000427526 TRIM42Q8IWZ5 723 aa14.77□□□□□ -0.04
LIG1-202ENST00000427526 ARMC2Q8NEN0 867 aa14.77□□□□□ -0.04
LIG1-202ENST00000427526 E2F7Q96AV8 911 aa14.77□□□□□ -0.04
LIG1-202ENST00000427526 MTBPQ96DY7 904 aa14.77□□□□□ -0.04
LIG1-202ENST00000427526 TRIM56Q9BRZ2 755 aaKnown RBP14.77□□□□□ -0.04
LIG1-202ENST00000427526 NRDE2Q9H7Z3 1164 aa14.77□□□□□ -0.04
LIG1-202ENST00000427526 CDHR5Q9HBB8 845 aa14.77□□□□□ -0.04
LIG1-202ENST00000427526 BMPR2Q13873 1038 aa14.77□□□□□ -0.05
LIG1-202ENST00000427526 KPNB1Q14974 876 aaKnown RBP14.77□□□□□ -0.05
LIG1-202ENST00000427526 OLFML2BQ68BL8 750 aa14.77□□□□□ -0.05
LIG1-202ENST00000427526 ANO7Q6IWH7 933 aa14.77□□□□□ -0.05
LIG1-202ENST00000427526 TRMT10BQ6PF06 316 aaKnown RBP14.77□□□□□ -0.05
LIG1-202ENST00000427526 EBNA1BP2Q99848 306 aaKnown RBP14.77□□□□□ -0.05
LIG1-202ENST00000427526 FAM167BQ9BTA0 163 aa14.77□□□□□ -0.05
LIG1-202ENST00000427526 SLC13A1Q9BZW2 595 aa14.77□□□□□ -0.05
LIG1-202ENST00000427526 TRIM6Q9C030 488 aaPredicted RBP14.77□□□□□ -0.05
LIG1-202ENST00000427526 ARMCX1Q9P291 453 aa14.77□□□□□ -0.05
LIG1-202ENST00000427526 CYB561D2O14569 222 aa14.76□□□□□ -0.05
LIG1-202ENST00000427526 PAPSS1O43252 624 aaPredicted RBP14.76□□□□□ -0.05
LIG1-202ENST00000427526 KRT38O76015 456 aa14.76□□□□□ -0.05
LIG1-202ENST00000427526 TFE3P19532 575 aaPredicted RBP14.76□□□□□ -0.05
LIG1-202ENST00000427526 L1CAMP32004 1257 aa14.76□□□□□ -0.05
LIG1-202ENST00000427526 CDK18Q07002 472 aa14.76□□□□□ -0.05
LIG1-202ENST00000427526 MAP2K5Q13163 448 aa14.76□□□□□ -0.05
LIG1-202ENST00000427526 TAF1CQ15572 869 aaPredicted RBP14.76□□□□□ -0.05
LIG1-202ENST00000427526 ATG16L1Q676U5 607 aa14.76□□□□□ -0.05
LIG1-202ENST00000427526 MPP5Q8N3R9 675 aa14.76□□□□□ -0.05
LIG1-202ENST00000427526 GSDMBQ8TAX9 411 aa14.76□□□□□ -0.05
LIG1-202ENST00000427526 WDR60Q8WVS4 1066 aa14.76□□□□□ -0.05
LIG1-202ENST00000427526 C11orf84Q9BUA3 381 aaPredicted RBP14.76□□□□□ -0.05
LIG1-202ENST00000427526 CXCL16Q9H2A7 254 aa14.76□□□□□ -0.05
LIG1-202ENST00000427526 STOML1Q9UBI4 398 aa14.76□□□□□ -0.05
LIG1-202ENST00000427526 NME7Q9Y5B8 376 aa14.76□□□□□ -0.05
LIG1-202ENST00000427526 SNNO75324 88 aaPredicted RBP14.76□□□□□ -0.05
LIG1-202ENST00000427526 ACADSP16219 412 aa14.76□□□□□ -0.05
LIG1-202ENST00000427526 TPSB2P20231 275 aa14.76□□□□□ -0.05
LIG1-202ENST00000427526 CYP2F1P24903 491 aa14.76□□□□□ -0.05
LIG1-202ENST00000427526 CRHR1P34998 444 aa14.76□□□□□ -0.05
LIG1-202ENST00000427526 IRX1P78414 480 aaPredicted RBP14.76□□□□□ -0.05
LIG1-202ENST00000427526 TPSAB1Q15661 275 aa14.76□□□□□ -0.05
LIG1-202ENST00000427526 TRIM68Q6AZZ1 485 aa14.76□□□□□ -0.05
LIG1-202ENST00000427526 NT5DC4Q86YG4 428 aa14.76□□□□□ -0.05
LIG1-202ENST00000427526 RASAL3Q86YV0 1011 aa14.76□□□□□ -0.05
LIG1-202ENST00000427526 VPS52Q8N1B4 723 aa14.76□□□□□ -0.05
LIG1-202ENST00000427526 ACAP3Q96P50 834 aa14.76□□□□□ -0.05
LIG1-202ENST00000427526 C20orf27Q9GZN8 174 aa14.76□□□□□ -0.05
LIG1-202ENST00000427526 ZNF395Q9H8N7 513 aaPredicted RBP14.76□□□□□ -0.05
LIG1-202ENST00000427526 GTF2IRD1Q9UHL9 959 aa14.76□□□□□ -0.05
LIG1-202ENST00000427526 GNEQ9Y223 722 aaKnown RBP14.76□□□□□ -0.05
LIG1-202ENST00000427526 I3L4J1 428 aa14.76□□□□□ -0.05
LIG1-202ENST00000427526 CYP2B6P20813 491 aa14.76□□□□□ -0.05
LIG1-202ENST00000427526 TMPRSS15P98073 1019 aa14.76□□□□□ -0.05
LIG1-202ENST00000427526 GBE1Q04446 702 aa14.76□□□□□ -0.05
LIG1-202ENST00000427526 HIC1Q14526 733 aa14.76□□□□□ -0.05
LIG1-202ENST00000427526 CHI3L2Q15782 390 aa14.76□□□□□ -0.05
LIG1-202ENST00000427526 DPYSL2Q16555 572 aa14.76□□□□□ -0.05
LIG1-202ENST00000427526 PPP6R3Q5H9R7 873 aaPredicted RBP14.76□□□□□ -0.05
LIG1-202ENST00000427526 CYS1Q717R9 158 aa14.76□□□□□ -0.05
LIG1-202ENST00000427526 TREML1Q86YW5 311 aa14.76□□□□□ -0.05
LIG1-202ENST00000427526 CDKL3Q8IVW4 592 aaPredicted RBP14.76□□□□□ -0.05
LIG1-202ENST00000427526 RAB3IL1Q8TBN0 382 aa14.76□□□□□ -0.05
LIG1-202ENST00000427526 DNAJC9Q8WXX5 260 aa14.76□□□□□ -0.05
LIG1-202ENST00000427526 MCUR1Q96AQ8 359 aa14.76□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms