RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 SMARCA1P28370 1054 aa7.11□□□□□ -1.27
USP40-202ENST00000409945 CNR2P34972 360 aa7.11□□□□□ -1.27
USP40-202ENST00000409945 SOX8P57073 446 aa7.11□□□□□ -1.27
USP40-202ENST00000409945 PPP2CBP62714 309 aa7.11□□□□□ -1.27
USP40-202ENST00000409945 PPP2CAP67775 309 aa7.11□□□□□ -1.27
USP40-202ENST00000409945 BAATQ14032 418 aaPredicted RBP7.11□□□□□ -1.27
USP40-202ENST00000409945 PKN1Q16512 942 aa7.11□□□□□ -1.27
USP40-202ENST00000409945 ZNF568Q3ZCX4 644 aa7.11□□□□□ -1.27
USP40-202ENST00000409945 KLHDC7AQ5VTJ3 777 aa7.11□□□□□ -1.27
USP40-202ENST00000409945 CHST3Q7LGC8 479 aa7.11□□□□□ -1.27
USP40-202ENST00000409945 TMEM151BQ8IW70 566 aa7.11□□□□□ -1.27
USP40-202ENST00000409945 FAM133AQ8N9E0 248 aa7.11□□□□□ -1.27
USP40-202ENST00000409945 GJA10Q969M2 543 aa7.11□□□□□ -1.27
USP40-202ENST00000409945 GJB4Q9NTQ9 266 aa7.11□□□□□ -1.27
USP40-202ENST00000409945 RBM28Q9NW13 759 aaKnown RBP7.11□□□□□ -1.27
USP40-202ENST00000409945 NAP1L2Q9ULW6 460 aaPredicted RBP7.11□□□□□ -1.27
USP40-202ENST00000409945 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP7.11□□□□□ -1.27
USP40-202ENST00000409945 A0A1W2PPL8 197 aa7.11□□□□□ -1.27
USP40-202ENST00000409945 OTOL1A6NHN0 477 aaPredicted RBP7.11□□□□□ -1.27
USP40-202ENST00000409945 PAX4O43316 350 aa7.11□□□□□ -1.27
USP40-202ENST00000409945 RPLP2P05387 115 aaKnown RBP7.11□□□□□ -1.27
USP40-202ENST00000409945 BMP7P18075 431 aa7.11□□□□□ -1.27
USP40-202ENST00000409945 SLC7A1P30825 629 aa7.11□□□□□ -1.27
USP40-202ENST00000409945 CASP5P51878 434 aa7.11□□□□□ -1.27
USP40-202ENST00000409945 RPS6P62753 249 aaKnown RBP7.11□□□□□ -1.27
USP40-202ENST00000409945 FMO1Q01740 532 aa7.11□□□□□ -1.27
USP40-202ENST00000409945 TNFAIP2Q03169 654 aa7.11□□□□□ -1.27
USP40-202ENST00000409945 FOXL1Q12952 345 aa7.11□□□□□ -1.27
USP40-202ENST00000409945 POLD3Q15054 466 aaPredicted RBP7.11□□□□□ -1.27
USP40-202ENST00000409945 PPP2R5BQ15173 497 aa7.11□□□□□ -1.27
USP40-202ENST00000409945 QRICH1Q2TAL8 776 aa7.11□□□□□ -1.27
USP40-202ENST00000409945 C3orf38Q5JPI3 329 aa7.11□□□□□ -1.27
USP40-202ENST00000409945 PRAMEF19Q5SWL8 479 aa7.11□□□□□ -1.27
USP40-202ENST00000409945 TCTN3Q6NUS6 607 aa7.11□□□□□ -1.27
USP40-202ENST00000409945 BLOC1S2Q6QNY1 142 aa7.11□□□□□ -1.27
USP40-202ENST00000409945 RASGRP2Q7LDG7 609 aa7.11□□□□□ -1.27
USP40-202ENST00000409945 LIMS2Q7Z4I7 341 aa7.11□□□□□ -1.27
USP40-202ENST00000409945 FAM124AQ86V42 546 aa7.11□□□□□ -1.27
USP40-202ENST00000409945 NEU1Q99519 415 aa7.11□□□□□ -1.27
USP40-202ENST00000409945 TCF25Q9BQ70 676 aa7.11□□□□□ -1.27
USP40-202ENST00000409945 JMJD4Q9H9V9 463 aa7.11□□□□□ -1.27
USP40-202ENST00000409945 MAD2L2Q9UI95 211 aa7.11□□□□□ -1.27
USP40-202ENST00000409945 CCDC78A2IDD5 438 aa7.1□□□□□ -1.27
USP40-202ENST00000409945 CDHR4A6H8M9 788 aa7.1□□□□□ -1.27
USP40-202ENST00000409945 SH2B2O14492 632 aaPredicted RBP7.1□□□□□ -1.27
USP40-202ENST00000409945 PHGDHO43175 533 aaKnown RBP7.1□□□□□ -1.27
USP40-202ENST00000409945 PIK3CGP48736 1102 aa7.1□□□□□ -1.27
USP40-202ENST00000409945 ARFIP2P53365 341 aa7.1□□□□□ -1.27
USP40-202ENST00000409945 SUMO3P55854 103 aaPredicted RBP7.1□□□□□ -1.27
USP40-202ENST00000409945 CNTN2Q02246 1040 aa7.1□□□□□ -1.27
USP40-202ENST00000409945 GJC2Q5T442 439 aaPredicted RBP7.1□□□□□ -1.27
USP40-202ENST00000409945 ARHGEF16Q5VV41 709 aa7.1□□□□□ -1.27
USP40-202ENST00000409945 C1QL3Q5VWW1 255 aa7.1□□□□□ -1.27
USP40-202ENST00000409945 ANO1Q5XXA6 986 aa7.1□□□□□ -1.27
USP40-202ENST00000409945 FAM111BQ6SJ93 734 aa7.1□□□□□ -1.27
USP40-202ENST00000409945 ARHGEF18Q6ZSZ5 1173 aa7.1□□□□□ -1.27
USP40-202ENST00000409945 STOX1Q6ZVD7 989 aa7.1□□□□□ -1.27
USP40-202ENST00000409945 SEM1Q6ZVN7 128 aa7.1□□□□□ -1.27
USP40-202ENST00000409945 UBE2Q1Q7Z7E8 422 aa7.1□□□□□ -1.27
USP40-202ENST00000409945 EXOC8Q8IYI6 725 aa7.1□□□□□ -1.27
USP40-202ENST00000409945 TMIEQ8NEW7 156 aa7.1□□□□□ -1.27
USP40-202ENST00000409945 KIAA1191Q96A73 305 aa7.1□□□□□ -1.27
USP40-202ENST00000409945 GLT1D1Q96MS3 346 aa7.1□□□□□ -1.27
USP40-202ENST00000409945 IWS1Q96ST2 819 aa7.1□□□□□ -1.27
USP40-202ENST00000409945 LBHD1Q9BQE6 289 aaPredicted RBP7.1□□□□□ -1.27
USP40-202ENST00000409945 SPZ1Q9BXG8 430 aa7.1□□□□□ -1.27
USP40-202ENST00000409945 SEZ6LQ9BYH1 1024 aa7.1□□□□□ -1.27
USP40-202ENST00000409945 EPC1Q9H2F5 836 aa7.1□□□□□ -1.27
USP40-202ENST00000409945 LY9Q9HBG7 655 aa7.1□□□□□ -1.27
USP40-202ENST00000409945 DMTF1Q9Y222 760 aa7.1□□□□□ -1.27
USP40-202ENST00000409945 MROH7Q68CQ1 1323 aa7.1□□□□□ -1.27
USP40-202ENST00000409945 MYH6P13533 1939 aa7.1□□□□□ -1.27
USP40-202ENST00000409945 TMEM233B4DJY2 109 aa7.09□□□□□ -1.27
USP40-202ENST00000409945 GCOM1H8Y6P7 765 aaPredicted RBP7.09□□□□□ -1.27
USP40-202ENST00000409945 TNRC18O15417 2968 aaPredicted RBP7.09□□□□□ -1.27
USP40-202ENST00000409945 ZBTB43O43298 467 aa7.09□□□□□ -1.27
USP40-202ENST00000409945 CABYRO75952 493 aa7.09□□□□□ -1.27
USP40-202ENST00000409945 SNAI1O95863 264 aaPredicted RBP7.09□□□□□ -1.27
USP40-202ENST00000409945 POLR2MP0CAP2 368 aa7.09□□□□□ -1.27
USP40-202ENST00000409945 HTR3AP46098 478 aa7.09□□□□□ -1.27
USP40-202ENST00000409945 RCAN1P53805 252 aa7.09□□□□□ -1.27
USP40-202ENST00000409945 EPHB4P54760 987 aa7.09□□□□□ -1.27
USP40-202ENST00000409945 PSMC1P62191 440 aaKnown RBP7.09□□□□□ -1.27
USP40-202ENST00000409945 NOMO3P69849 1222 aa7.09□□□□□ -1.27
USP40-202ENST00000409945 AKAP17AQ02040 695 aaKnown RBP7.09□□□□□ -1.27
USP40-202ENST00000409945 TROAPQ12815 778 aa7.09□□□□□ -1.27
USP40-202ENST00000409945 GRM7Q14831 915 aa7.09□□□□□ -1.27
USP40-202ENST00000409945 STXBP2Q15833 593 aa7.09□□□□□ -1.27
USP40-202ENST00000409945 SGMS1Q86VZ5 419 aa7.09□□□□□ -1.27
USP40-202ENST00000409945 FUKQ8N0W3 1084 aa7.09□□□□□ -1.27
USP40-202ENST00000409945 TRPV1Q8NER1 839 aa7.09□□□□□ -1.27
USP40-202ENST00000409945 SCFD2Q8WU76 684 aa7.09□□□□□ -1.27
USP40-202ENST00000409945 PHKBQ93100 1093 aa7.09□□□□□ -1.27
USP40-202ENST00000409945 MTFMTQ96DP5 389 aaKnown RBP7.09□□□□□ -1.27
USP40-202ENST00000409945 SGCZQ96LD1 299 aa7.09□□□□□ -1.27
USP40-202ENST00000409945 JAKMIP1Q96N16 626 aaKnown RBP7.09□□□□□ -1.27
USP40-202ENST00000409945 KCNC2Q96PR1 638 aa7.09□□□□□ -1.27
USP40-202ENST00000409945 RMDN3Q96TC7 470 aa7.09□□□□□ -1.27
USP40-202ENST00000409945 XYLT2Q9H1B5 865 aa7.09□□□□□ -1.27
USP40-202ENST00000409945 GSTO2Q9H4Y5 243 aa7.09□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms