RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 ZFAND3Q9H8U3 227 aa9.66□□□□□ -0.86
VPS53-203ENST00000401468 GTSE1Q9NYZ3 720 aa9.66□□□□□ -0.86
VPS53-203ENST00000401468 GDE1Q9NZC3 331 aa9.66□□□□□ -0.86
VPS53-203ENST00000401468 HESX1Q9UBX0 185 aa9.66□□□□□ -0.86
VPS53-203ENST00000401468 CCL26Q9Y258 94 aa9.66□□□□□ -0.86
VPS53-203ENST00000401468 ZFP37Q9Y6Q3 630 aaPredicted RBP9.66□□□□□ -0.86
VPS53-203ENST00000401468 PIAS3Q9Y6X2 628 aa9.66□□□□□ -0.86
VPS53-203ENST00000401468 SPTBN2O15020 2390 aa9.66□□□□□ -0.86
VPS53-203ENST00000401468 SETXQ7Z333 2677 aaKnown RBP9.66□□□□□ -0.86
VPS53-203ENST00000401468 PI4KAP42356 2102 aa9.65□□□□□ -0.86
VPS53-203ENST00000401468 M0QYV0 167 aa9.65□□□□□ -0.86
VPS53-203ENST00000401468 TULP2O00295 520 aa9.65□□□□□ -0.86
VPS53-203ENST00000401468 DDX3XO00571 662 aaKnown RBP eCLIP9.65□□□□□ -0.86
VPS53-203ENST00000401468 ZNF197O14709 1029 aa9.65□□□□□ -0.86
VPS53-203ENST00000401468 LCA5LO95447 670 aa9.65□□□□□ -0.86
VPS53-203ENST00000401468 PLEKP08567 350 aaPredicted RBP9.65□□□□□ -0.86
VPS53-203ENST00000401468 GRIK1P39086 918 aa9.65□□□□□ -0.86
VPS53-203ENST00000401468 KIF11P52732 1056 aa9.65□□□□□ -0.86
VPS53-203ENST00000401468 MAP3K7CLP57077 242 aa9.65□□□□□ -0.86
VPS53-203ENST00000401468 GSDMDP57764 484 aa9.65□□□□□ -0.86
VPS53-203ENST00000401468 ARID5AQ03989 594 aa9.65□□□□□ -0.86
VPS53-203ENST00000401468 DMWDQ09019 674 aa9.65□□□□□ -0.86
VPS53-203ENST00000401468 IFRD2Q12894 506 aaPredicted RBP9.65□□□□□ -0.86
VPS53-203ENST00000401468 PTP4A2Q12974 167 aa9.65□□□□□ -0.86
VPS53-203ENST00000401468 MTAPQ13126 283 aa9.65□□□□□ -0.86
VPS53-203ENST00000401468 SRSF5Q13243 272 aaKnown RBP9.65□□□□□ -0.86
VPS53-203ENST00000401468 PDCLQ13371 301 aa9.65□□□□□ -0.86
VPS53-203ENST00000401468 FZD5Q13467 585 aa9.65□□□□□ -0.86
VPS53-203ENST00000401468 COL9A2Q14055 689 aaPredicted RBP9.65□□□□□ -0.86
VPS53-203ENST00000401468 CLEC16AQ2KHT3 1053 aa9.65□□□□□ -0.86
VPS53-203ENST00000401468 SNX30Q5VWJ9 437 aa9.65□□□□□ -0.86
VPS53-203ENST00000401468 TXNDC8Q6A555 127 aa9.65□□□□□ -0.86
VPS53-203ENST00000401468 HEATR6Q6AI08 1181 aaKnown RBP9.65□□□□□ -0.86
VPS53-203ENST00000401468 PM20D1Q6GTS8 502 aa9.65□□□□□ -0.86
VPS53-203ENST00000401468 Q6ZS52 159 aa9.65□□□□□ -0.86
VPS53-203ENST00000401468 BHLHA9Q7RTU4 235 aa9.65□□□□□ -0.86
VPS53-203ENST00000401468 PIGZQ86VD9 579 aa9.65□□□□□ -0.86
VPS53-203ENST00000401468 PHF13Q86YI8 300 aaPredicted RBP9.65□□□□□ -0.86
VPS53-203ENST00000401468 SCN4BQ8IWT1 228 aa9.65□□□□□ -0.86
VPS53-203ENST00000401468 MAB21L3Q8N8X9 362 aa9.65□□□□□ -0.86
VPS53-203ENST00000401468 OVCA2Q8WZ82 227 aa9.65□□□□□ -0.86
VPS53-203ENST00000401468 SECISBP2LQ93073 1101 aaKnown RBP9.65□□□□□ -0.86
VPS53-203ENST00000401468 ITPKCQ96DU7 683 aa9.65□□□□□ -0.86
VPS53-203ENST00000401468 CNTNAP3BQ96NU0 1288 aa9.65□□□□□ -0.86
VPS53-203ENST00000401468 PPP1R9BQ96SB3 815 aa9.65□□□□□ -0.86
VPS53-203ENST00000401468 CHP1Q99653 195 aa9.65□□□□□ -0.86
VPS53-203ENST00000401468 MED10Q9BTT4 135 aa9.65□□□□□ -0.86
VPS53-203ENST00000401468 CNTNAP3Q9BZ76 1288 aa9.65□□□□□ -0.86
VPS53-203ENST00000401468 ISCUQ9H1K1 167 aa9.65□□□□□ -0.86
VPS53-203ENST00000401468 TRPC7Q9HCX4 862 aa9.65□□□□□ -0.86
VPS53-203ENST00000401468 USP24Q9UPU5 2620 aa9.65□□□□□ -0.87
VPS53-203ENST00000401468 MAP1BP46821 2468 aaKnown RBP9.64□□□□□ -0.87
VPS53-203ENST00000401468 A0A087X0T9 212 aa9.64□□□□□ -0.87
VPS53-203ENST00000401468 ANTXRLA6NF34 631 aa9.64□□□□□ -0.87
VPS53-203ENST00000401468 SOBPA7XYQ1 873 aa9.64□□□□□ -0.87
VPS53-203ENST00000401468 PROB1E7EW31 1015 aa9.64□□□□□ -0.87
VPS53-203ENST00000401468 ZNF263O14978 683 aa9.64□□□□□ -0.87
VPS53-203ENST00000401468 RTN3O95197 1032 aaPredicted RBP9.64□□□□□ -0.87
VPS53-203ENST00000401468 ZDHHC11BP0C7U3 371 aa9.64□□□□□ -0.87
VPS53-203ENST00000401468 FAM228BP0C875 321 aa9.64□□□□□ -0.87
VPS53-203ENST00000401468 CSH1P0DML2 217 aa9.64□□□□□ -0.87
VPS53-203ENST00000401468 CSH2P0DML3 217 aa9.64□□□□□ -0.87
VPS53-203ENST00000401468 SKILP12757 684 aa9.64□□□□□ -0.87
VPS53-203ENST00000401468 PSMC3P17980 439 aa9.64□□□□□ -0.87
VPS53-203ENST00000401468 MMP8P22894 467 aa9.64□□□□□ -0.87
VPS53-203ENST00000401468 SCNN1AP37088 669 aa9.64□□□□□ -0.87
VPS53-203ENST00000401468 ACADSBP45954 432 aa9.64□□□□□ -0.87
VPS53-203ENST00000401468 SLC5A3P53794 718 aa9.64□□□□□ -0.87
VPS53-203ENST00000401468 SLC8A3P57103 927 aa9.64□□□□□ -0.87
VPS53-203ENST00000401468 GOLGA8FQ08AF8 430 aa9.64□□□□□ -0.87
VPS53-203ENST00000401468 GOLGA8DPQ0D2H9 430 aa9.64□□□□□ -0.87
VPS53-203ENST00000401468 PON2Q15165 354 aa9.64□□□□□ -0.87
VPS53-203ENST00000401468 TAF12Q16514 161 aa9.64□□□□□ -0.87
VPS53-203ENST00000401468 SLC18A3Q16572 532 aa9.64□□□□□ -0.87
VPS53-203ENST00000401468 PTPN20Q4JDL3 420 aa9.64□□□□□ -0.87
VPS53-203ENST00000401468 PPP1R2P3Q6NXS1 205 aa9.64□□□□□ -0.87
VPS53-203ENST00000401468 PKN3Q6P5Z2 889 aa9.64□□□□□ -0.87
VPS53-203ENST00000401468 DENND5BQ6ZUT9 1274 aa9.64□□□□□ -0.87
VPS53-203ENST00000401468 MON1BQ7L1V2 547 aa9.64□□□□□ -0.87
VPS53-203ENST00000401468 BEND5Q7L4P6 421 aa9.64□□□□□ -0.87
VPS53-203ENST00000401468 GPRIN1Q7Z2K8 1008 aa9.64□□□□□ -0.87
VPS53-203ENST00000401468 CCDC186Q7Z3E2 898 aa9.64□□□□□ -0.87
VPS53-203ENST00000401468 TMEM150AQ86TG1 271 aa9.64□□□□□ -0.87
VPS53-203ENST00000401468 ITIH5Q86UX2 942 aa9.64□□□□□ -0.87
VPS53-203ENST00000401468 YAF2Q8IY57 180 aa9.64□□□□□ -0.87
VPS53-203ENST00000401468 NUP93Q8N1F7 819 aa9.64□□□□□ -0.87
VPS53-203ENST00000401468 ZNF276Q8N554 614 aa9.64□□□□□ -0.87
VPS53-203ENST00000401468 LEMD2Q8NC56 503 aa9.64□□□□□ -0.87
VPS53-203ENST00000401468 TMEM35BQ8NCS4 154 aa9.64□□□□□ -0.87
VPS53-203ENST00000401468 UBA3Q8TBC4 463 aa9.64□□□□□ -0.87
VPS53-203ENST00000401468 FAM3CQ92520 227 aa9.64□□□□□ -0.87
VPS53-203ENST00000401468 VCPIP1Q96JH7 1222 aa9.64□□□□□ -0.87
VPS53-203ENST00000401468 SLC22A12Q96S37 553 aa9.64□□□□□ -0.87
VPS53-203ENST00000401468 CPXM1Q96SM3 734 aa9.64□□□□□ -0.87
VPS53-203ENST00000401468 CYP2S1Q96SQ9 504 aa9.64□□□□□ -0.87
VPS53-203ENST00000401468 DDX23Q9BUQ8 820 aaKnown RBP9.64□□□□□ -0.87
VPS53-203ENST00000401468 SLC46A2Q9BY10 475 aa9.64□□□□□ -0.87
VPS53-203ENST00000401468 LMAN1LQ9HAT1 526 aa9.64□□□□□ -0.87
VPS53-203ENST00000401468 CNGB3Q9NQW8 809 aa9.64□□□□□ -0.87
VPS53-203ENST00000401468 EHD2Q9NZN4 543 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms