RNA–Protein interactions for RNA: ENST00000378161.5

NPHP4-202, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 4,370 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-202ENST00000378161 CRTAMO95727 393 aa12.1□□□□□ -0.47
NPHP4-202ENST00000378161 IFI30P13284 250 aa12.1□□□□□ -0.47
NPHP4-202ENST00000378161 TNNI1P19237 187 aa12.1□□□□□ -0.47
NPHP4-202ENST00000378161 RBL1P28749 1068 aa12.1□□□□□ -0.47
NPHP4-202ENST00000378161 NR4A2P43354 598 aa12.1□□□□□ -0.47
NPHP4-202ENST00000378161 CSTF3Q12996 717 aaKnown RBP12.1□□□□□ -0.47
NPHP4-202ENST00000378161 AP3B2Q13367 1082 aa12.1□□□□□ -0.47
NPHP4-202ENST00000378161 PDK1Q15118 436 aa12.1□□□□□ -0.47
NPHP4-202ENST00000378161 NRF1Q16656 503 aa12.1□□□□□ -0.47
NPHP4-202ENST00000378161 ZNF746Q6NUN9 644 aaPredicted RBP12.1□□□□□ -0.47
NPHP4-202ENST00000378161 FAM163AQ96GL9 167 aaPredicted RBP12.1□□□□□ -0.47
NPHP4-202ENST00000378161 OSBPL11Q9BXB4 747 aa12.1□□□□□ -0.47
NPHP4-202ENST00000378161 TRIM45Q9H8W5 580 aaPredicted RBP12.1□□□□□ -0.47
NPHP4-202ENST00000378161 CCDC195A0A1B0GUA6 201 aa12.1□□□□□ -0.47
NPHP4-202ENST00000378161 TMEM191CA6NGB0 347 aa12.1□□□□□ -0.47
NPHP4-202ENST00000378161 H3BUI4 141 aa12.1□□□□□ -0.47
NPHP4-202ENST00000378161 MAP3K6O95382 1288 aa12.1□□□□□ -0.47
NPHP4-202ENST00000378161 TMEM191BP0C7N4 346 aa12.1□□□□□ -0.47
NPHP4-202ENST00000378161 PTPN9P43378 593 aa12.1□□□□□ -0.47
NPHP4-202ENST00000378161 NME3Q13232 169 aa12.1□□□□□ -0.47
NPHP4-202ENST00000378161 HERC3Q15034 1050 aa12.1□□□□□ -0.47
NPHP4-202ENST00000378161 KNOP1Q1ED39 458 aaKnown RBP12.1□□□□□ -0.47
NPHP4-202ENST00000378161 ATP6V0D2Q8N8Y2 350 aa12.1□□□□□ -0.47
NPHP4-202ENST00000378161 VANGL1Q8TAA9 524 aaPredicted RBP12.1□□□□□ -0.47
NPHP4-202ENST00000378161 PBXIP1Q96AQ6 731 aa12.1□□□□□ -0.47
NPHP4-202ENST00000378161 SH3KBP1Q96B97 665 aa12.1□□□□□ -0.47
NPHP4-202ENST00000378161 CEP95Q96GE4 821 aa12.1□□□□□ -0.47
NPHP4-202ENST00000378161 BTBD6Q96KE9 485 aa12.1□□□□□ -0.47
NPHP4-202ENST00000378161 NEURL2Q9BR09 285 aa12.1□□□□□ -0.47
NPHP4-202ENST00000378161 FAM105AQ9NUU6 356 aa12.1□□□□□ -0.47
NPHP4-202ENST00000378161 WBP11Q9Y2W2 641 aaKnown RBP12.1□□□□□ -0.47
NPHP4-202ENST00000378161 I3L521 148 aa12.1□□□□□ -0.47
NPHP4-202ENST00000378161 STX7O15400 261 aaKnown RBP12.1□□□□□ -0.47
NPHP4-202ENST00000378161 OAS1P00973 400 aaKnown RBP12.1□□□□□ -0.47
NPHP4-202ENST00000378161 NR3C1P04150 777 aa12.1□□□□□ -0.47
NPHP4-202ENST00000378161 THRAP10827 490 aa12.1□□□□□ -0.47
NPHP4-202ENST00000378161 SCNN1DP51172 638 aa12.1□□□□□ -0.47
NPHP4-202ENST00000378161 EIF3EP60228 445 aaKnown RBP12.1□□□□□ -0.47
NPHP4-202ENST00000378161 SQLEQ14534 574 aa12.1□□□□□ -0.47
NPHP4-202ENST00000378161 ZYXQ15942 572 aaKnown RBP12.1□□□□□ -0.47
NPHP4-202ENST00000378161 RMND5AQ9H871 391 aa12.1□□□□□ -0.47
NPHP4-202ENST00000378161 RAB20Q9NX57 234 aa12.1□□□□□ -0.47
NPHP4-202ENST00000378161 FAM8A1Q9UBU6 413 aa12.1□□□□□ -0.47
NPHP4-202ENST00000378161 BTBD3Q9Y2F9 522 aa12.1□□□□□ -0.47
NPHP4-202ENST00000378161 ZBTB5O15062 677 aa12.09□□□□□ -0.47
NPHP4-202ENST00000378161 PRKD3O94806 890 aa12.09□□□□□ -0.47
NPHP4-202ENST00000378161 TDP2O95551 362 aa12.09□□□□□ -0.47
NPHP4-202ENST00000378161 HLA-DRAP01903 254 aa12.09□□□□□ -0.47
NPHP4-202ENST00000378161 SERPINB2P05120 415 aa12.09□□□□□ -0.47
NPHP4-202ENST00000378161 TFAP2AP05549 437 aa12.09□□□□□ -0.47
NPHP4-202ENST00000378161 RRM1P23921 792 aa12.09□□□□□ -0.47
NPHP4-202ENST00000378161 RRM2P31350 389 aa12.09□□□□□ -0.47
NPHP4-202ENST00000378161 EVI2BP34910 448 aa12.09□□□□□ -0.47
NPHP4-202ENST00000378161 NSFP46459 744 aaKnown RBP12.09□□□□□ -0.47
NPHP4-202ENST00000378161 INPP1P49441 399 aa12.09□□□□□ -0.47
NPHP4-202ENST00000378161 ETV1P50549 477 aa12.09□□□□□ -0.47
NPHP4-202ENST00000378161 MAPK12P53778 367 aa12.09□□□□□ -0.47
NPHP4-202ENST00000378161 DRG2P55039 364 aaKnown RBP12.09□□□□□ -0.47
NPHP4-202ENST00000378161 NKX1-1Q15270 411 aaPredicted RBP12.09□□□□□ -0.47
NPHP4-202ENST00000378161 ZNF544Q6NX49 715 aa12.09□□□□□ -0.47
NPHP4-202ENST00000378161 RALGPS2Q86X27 583 aaPredicted RBP12.09□□□□□ -0.47
NPHP4-202ENST00000378161 MARVELD2Q8N4S9 558 aa12.09□□□□□ -0.47
NPHP4-202ENST00000378161 TPCN2Q8NHX9 752 aa12.09□□□□□ -0.47
NPHP4-202ENST00000378161 FAM149B1Q96BN6 582 aa12.09□□□□□ -0.47
NPHP4-202ENST00000378161 TMEM260Q9NX78 707 aa12.09□□□□□ -0.47
NPHP4-202ENST00000378161 HOXC10Q9NYD6 342 aa12.09□□□□□ -0.47
NPHP4-202ENST00000378161 GABBR1Q9UBS5 961 aa12.09□□□□□ -0.47
NPHP4-202ENST00000378161 PADI4Q9UM07 663 aa12.09□□□□□ -0.47
NPHP4-202ENST00000378161 SNX13Q9Y5W8 968 aa12.09□□□□□ -0.47
NPHP4-202ENST00000378161 PFASO15067 1338 aa12.09□□□□□ -0.47
NPHP4-202ENST00000378161 A0A1W2PPW3 197 aa12.09□□□□□ -0.47
NPHP4-202ENST00000378161 AIM2O14862 343 aa12.09□□□□□ -0.47
NPHP4-202ENST00000378161 AKAP10O43572 662 aa12.09□□□□□ -0.47
NPHP4-202ENST00000378161 BBOX1O75936 387 aa12.09□□□□□ -0.47
NPHP4-202ENST00000378161 FKBP9O95302 570 aa12.09□□□□□ -0.47
NPHP4-202ENST00000378161 PAHP00439 452 aa12.09□□□□□ -0.47
NPHP4-202ENST00000378161 MYCLP12524 364 aaPredicted RBP12.09□□□□□ -0.47
NPHP4-202ENST00000378161 RXRBP28702 533 aa12.09□□□□□ -0.47
NPHP4-202ENST00000378161 CCND2P30279 289 aa12.09□□□□□ -0.47
NPHP4-202ENST00000378161 ABCG1P45844 678 aa12.09□□□□□ -0.47
NPHP4-202ENST00000378161 RPL21P46778 160 aaKnown RBP12.09□□□□□ -0.47
NPHP4-202ENST00000378161 GRAPQ13588 217 aa12.09□□□□□ -0.47
NPHP4-202ENST00000378161 RUNDC3AQ59EK9 446 aa12.09□□□□□ -0.47
NPHP4-202ENST00000378161 ARHGEF16Q5VV41 709 aa12.09□□□□□ -0.47
NPHP4-202ENST00000378161 USP43Q70EL4 1123 aa12.09□□□□□ -0.47
NPHP4-202ENST00000378161 ARMC8Q8IUR7 673 aa12.09□□□□□ -0.47
NPHP4-202ENST00000378161 CCDC33Q8N5R6 958 aa12.09□□□□□ -0.47
NPHP4-202ENST00000378161 PCYOX1LQ8NBM8 494 aa12.09□□□□□ -0.47
NPHP4-202ENST00000378161 GRAPLQ8TC17 118 aaPredicted RBP12.09□□□□□ -0.47
NPHP4-202ENST00000378161 SYTL5Q8TDW5 730 aaPredicted RBP12.09□□□□□ -0.47
NPHP4-202ENST00000378161 IFT22Q9H7X7 185 aa12.09□□□□□ -0.47
NPHP4-202ENST00000378161 GPSM3Q9Y4H4 160 aa12.09□□□□□ -0.47
NPHP4-202ENST00000378161 NPPAP01160 153 aa12.09□□□□□ -0.47
NPHP4-202ENST00000378161 RBP3P10745 1247 aa12.09□□□□□ -0.47
NPHP4-202ENST00000378161 GNL1P36915 607 aaPredicted RBP12.09□□□□□ -0.47
NPHP4-202ENST00000378161 MRPS22P82650 360 aaKnown RBP12.09□□□□□ -0.47
NPHP4-202ENST00000378161 DUPD1Q68J44 220 aa12.09□□□□□ -0.47
NPHP4-202ENST00000378161 CYP20A1Q6UW02 462 aa12.09□□□□□ -0.47
NPHP4-202ENST00000378161 FBXW8Q8N3Y1 598 aa12.09□□□□□ -0.47
NPHP4-202ENST00000378161 SNX31Q8N9S9 440 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms