RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 CLDN5O00501 218 aa10.47□□□□□ -0.73
USP54-201ENST00000339859 STAT4Q14765 748 aa10.47□□□□□ -0.73
USP54-201ENST00000339859 NCAPHQ15003 741 aa10.47□□□□□ -0.73
USP54-201ENST00000339859 ANKMY2Q8IV38 441 aa10.47□□□□□ -0.73
USP54-201ENST00000339859 CYTH2Q99418 400 aa10.47□□□□□ -0.73
USP54-201ENST00000339859 KIAA1522Q9P206 1035 aaPredicted RBP10.47□□□□□ -0.73
USP54-201ENST00000339859 ADAMTS7Q9UKP4 1686 aa10.47□□□□□ -0.73
USP54-201ENST00000339859 C4BPAP04003 597 aaKnown RBP10.47□□□□□ -0.73
USP54-201ENST00000339859 MARSP56192 900 aaKnown RBP10.47□□□□□ -0.73
USP54-201ENST00000339859 BRMS1LQ5PSV4 323 aa10.47□□□□□ -0.73
USP54-201ENST00000339859 USP45Q70EL2 814 aa10.47□□□□□ -0.73
USP54-201ENST00000339859 LPCAT1Q8NF37 534 aa10.47□□□□□ -0.73
USP54-201ENST00000339859 XPNPEP1Q9NQW7 623 aa10.47□□□□□ -0.73
USP54-201ENST00000339859 AMACRQ9UHK6 382 aa10.47□□□□□ -0.73
USP54-201ENST00000339859 RHOBTB1O94844 696 aa10.46□□□□□ -0.73
USP54-201ENST00000339859 TRIM32Q13049 653 aa10.46□□□□□ -0.73
USP54-201ENST00000339859 ACOX1Q15067 660 aa10.46□□□□□ -0.73
USP54-201ENST00000339859 PPP1R26Q5T8A7 1209 aaPredicted RBP10.46□□□□□ -0.73
USP54-201ENST00000339859 MAP3K21Q5TCX8 1036 aa10.46□□□□□ -0.73
USP54-201ENST00000339859 CDCA2Q69YH5 1023 aaPredicted RBP10.46□□□□□ -0.73
USP54-201ENST00000339859 RNF135Q8IUD6 432 aa10.46□□□□□ -0.73
USP54-201ENST00000339859 FAM71AQ8IYT1 594 aa10.46□□□□□ -0.73
USP54-201ENST00000339859 ZDHHC6Q9H6R6 413 aa10.46□□□□□ -0.73
USP54-201ENST00000339859 LATS2Q9NRM7 1088 aa10.46□□□□□ -0.73
USP54-201ENST00000339859 DZANK1Q9NVP4 752 aa10.46□□□□□ -0.73
USP54-201ENST00000339859 BAG5Q9UL15 447 aa10.46□□□□□ -0.73
USP54-201ENST00000339859 TARSL2A2RTX5 802 aaKnown RBP10.46□□□□□ -0.73
USP54-201ENST00000339859 C8AP07357 584 aa10.46□□□□□ -0.73
USP54-201ENST00000339859 IQCF3P0C7M6 154 aa10.46□□□□□ -0.73
USP54-201ENST00000339859 HSPA9P38646 679 aaKnown RBP10.46□□□□□ -0.73
USP54-201ENST00000339859 FBXL19Q6PCT2 694 aa10.46□□□□□ -0.73
USP54-201ENST00000339859 ADCK2Q7Z695 626 aa10.46□□□□□ -0.73
USP54-201ENST00000339859 CRLF3Q8IUI8 442 aa10.46□□□□□ -0.73
USP54-201ENST00000339859 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP10.46□□□□□ -0.73
USP54-201ENST00000339859 CABS1Q96KC9 395 aa10.46□□□□□ -0.73
USP54-201ENST00000339859 NTPCRQ9BSD7 190 aaKnown RBP10.46□□□□□ -0.73
USP54-201ENST00000339859 YIPF2Q9BWQ6 316 aa10.46□□□□□ -0.73
USP54-201ENST00000339859 PARD6BQ9BYG5 372 aa10.46□□□□□ -0.73
USP54-201ENST00000339859 ELAC1Q9H777 363 aaKnown RBP10.46□□□□□ -0.73
USP54-201ENST00000339859 RGS18Q9NS28 235 aa10.46□□□□□ -0.73
USP54-201ENST00000339859 RBM22Q9NW64 420 aaKnown RBP eCLIP10.46□□□□□ -0.73
USP54-201ENST00000339859 A0A1W2PQH9 124 aa10.46□□□□□ -0.73
USP54-201ENST00000339859 ARHGAP10A1A4S6 786 aa10.46□□□□□ -0.73
USP54-201ENST00000339859 RASA4BC9J798 803 aa10.46□□□□□ -0.73
USP54-201ENST00000339859 PITPNM1O00562 1244 aa10.46□□□□□ -0.73
USP54-201ENST00000339859 RASA4O43374 803 aa10.46□□□□□ -0.73
USP54-201ENST00000339859 ITGBL1O95965 494 aaPredicted RBP10.46□□□□□ -0.73
USP54-201ENST00000339859 PIGRP01833 764 aa10.46□□□□□ -0.73
USP54-201ENST00000339859 SPRP35270 261 aaPredicted RBP10.46□□□□□ -0.73
USP54-201ENST00000339859 GNGT1P63211 74 aa10.46□□□□□ -0.73
USP54-201ENST00000339859 PPARDQ03181 441 aa10.46□□□□□ -0.73
USP54-201ENST00000339859 ZC3H12AQ5D1E8 599 aaKnown RBP10.46□□□□□ -0.73
USP54-201ENST00000339859 SERPINA13PQ6UXR4 307 aa10.46□□□□□ -0.73
USP54-201ENST00000339859 CMTR2Q8IYT2 770 aaKnown RBP10.46□□□□□ -0.73
USP54-201ENST00000339859 SPATA4Q8NEY3 305 aa10.46□□□□□ -0.73
USP54-201ENST00000339859 MS4A14Q96JA4 679 aa10.46□□□□□ -0.73
USP54-201ENST00000339859 FAM167BQ9BTA0 163 aa10.46□□□□□ -0.73
USP54-201ENST00000339859 TRIM45Q9H8W5 580 aaPredicted RBP10.46□□□□□ -0.73
USP54-201ENST00000339859 GTSE1Q9NYZ3 720 aa10.46□□□□□ -0.73
USP54-201ENST00000339859 CNTN3Q9P232 1028 aa10.46□□□□□ -0.73
USP54-201ENST00000339859 MRFAP1Q9Y605 127 aa10.46□□□□□ -0.73
USP54-201ENST00000339859 GRM6O15303 877 aa10.46□□□□□ -0.74
USP54-201ENST00000339859 HADHAP40939 763 aa10.46□□□□□ -0.74
USP54-201ENST00000339859 CASP2P42575 452 aa10.46□□□□□ -0.74
USP54-201ENST00000339859 ZNF143P52747 638 aaPredicted RBP10.46□□□□□ -0.74
USP54-201ENST00000339859 IRX4P78413 519 aa10.46□□□□□ -0.74
USP54-201ENST00000339859 SYCP2LQ5T4T6 812 aa10.46□□□□□ -0.74
USP54-201ENST00000339859 SERINC5Q86VE9 423 aa10.46□□□□□ -0.74
USP54-201ENST00000339859 RGL4Q8IZJ4 473 aa10.46□□□□□ -0.74
USP54-201ENST00000339859 TDRD5Q8NAT2 981 aaKnown RBP10.46□□□□□ -0.74
USP54-201ENST00000339859 LHX5Q9H2C1 402 aa10.46□□□□□ -0.74
USP54-201ENST00000339859 DYNC1LI1Q9Y6G9 523 aaKnown RBP10.46□□□□□ -0.74
USP54-201ENST00000339859 ZSCAN5CA6NGD5 496 aaPredicted RBP10.46□□□□□ -0.74
USP54-201ENST00000339859 HMGB1P1B2RPK0 211 aaPredicted RBP10.46□□□□□ -0.74
USP54-201ENST00000339859 M0R2N6 131 aa10.46□□□□□ -0.74
USP54-201ENST00000339859 FSHRP23945 695 aa10.46□□□□□ -0.74
USP54-201ENST00000339859 OTUD4Q01804 1114 aaKnown RBP10.46□□□□□ -0.74
USP54-201ENST00000339859 SPARCL1Q14515 664 aa10.46□□□□□ -0.74
USP54-201ENST00000339859 TRMT11Q7Z4G4 463 aaKnown RBP10.46□□□□□ -0.74
USP54-201ENST00000339859 NT5DC3Q86UY8 548 aa10.46□□□□□ -0.74
USP54-201ENST00000339859 LRRC49Q8IUZ0 686 aa10.46□□□□□ -0.74
USP54-201ENST00000339859 COLGALT1Q8NBJ5 622 aa10.46□□□□□ -0.74
USP54-201ENST00000339859 CELF6Q96J87 481 aaKnown RBP10.46□□□□□ -0.74
USP54-201ENST00000339859 CAPS2Q9BXY5 557 aa10.46□□□□□ -0.74
USP54-201ENST00000339859 DUS2Q9NX74 493 aaKnown RBP10.46□□□□□ -0.74
USP54-201ENST00000339859 COL5A3P25940 1745 aaPredicted RBP10.45□□□□□ -0.74
USP54-201ENST00000339859 SLC38A8A6NNN8 435 aa10.45□□□□□ -0.74
USP54-201ENST00000339859 CILPO75339 1184 aa10.45□□□□□ -0.74
USP54-201ENST00000339859 CHRM3P20309 590 aa10.45□□□□□ -0.74
USP54-201ENST00000339859 MSH3P20585 1137 aa10.45□□□□□ -0.74
USP54-201ENST00000339859 HP1BP3Q5SSJ5 553 aaPredicted RBP10.45□□□□□ -0.74
USP54-201ENST00000339859 PRSS55Q6UWB4 352 aaPredicted RBP10.45□□□□□ -0.74
USP54-201ENST00000339859 PHF13Q86YI8 300 aaPredicted RBP10.45□□□□□ -0.74
USP54-201ENST00000339859 KIRREL3Q8IZU9 778 aa10.45□□□□□ -0.74
USP54-201ENST00000339859 E2F7Q96AV8 911 aa10.45□□□□□ -0.74
USP54-201ENST00000339859 VAT1Q99536 393 aa10.45□□□□□ -0.74
USP54-201ENST00000339859 CYLDQ9NQC7 956 aa10.45□□□□□ -0.74
USP54-201ENST00000339859 TRIM10Q9UDY6 481 aa10.45□□□□□ -0.74
USP54-201ENST00000339859 NUDT5Q9UKK9 219 aa10.45□□□□□ -0.74
USP54-201ENST00000339859 BAZ2BQ9UIF8 2168 aaKnown RBP10.45□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms