RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 MESP2Q0VG99 397 aa16.87■□□□□ 0.29
TRIM28-213ENST00000598355 NNTQ13423 1086 aa16.87■□□□□ 0.29
TRIM28-213ENST00000598355 SYCP1Q15431 976 aa16.87■□□□□ 0.29
TRIM28-213ENST00000598355 PKN3Q6P5Z2 889 aa16.87■□□□□ 0.29
TRIM28-213ENST00000598355 TMEM25Q86YD3 366 aa16.87■□□□□ 0.29
TRIM28-213ENST00000598355 ZBTB44Q8NCP5 570 aa16.87■□□□□ 0.29
TRIM28-213ENST00000598355 EDEM1Q92611 657 aa16.87■□□□□ 0.29
TRIM28-213ENST00000598355 ATOH1Q92858 354 aaPredicted RBP16.87■□□□□ 0.29
TRIM28-213ENST00000598355 P2RY11Q96G91 374 aa16.87■□□□□ 0.29
TRIM28-213ENST00000598355 DCLK3Q9C098 648 aa16.87■□□□□ 0.29
TRIM28-213ENST00000598355 TJP2Q9UDY2 1190 aa16.87■□□□□ 0.29
TRIM28-213ENST00000598355 STOML2Q9UJZ1 356 aa16.87■□□□□ 0.29
TRIM28-213ENST00000598355 PLXND1Q9Y4D7 1925 aa16.86■□□□□ 0.29
TRIM28-213ENST00000598355 SLC12A8A0AV02 714 aa16.86■□□□□ 0.29
TRIM28-213ENST00000598355 SYCE3A1L190 88 aa16.86■□□□□ 0.29
TRIM28-213ENST00000598355 K7ESF4 209 aa16.86■□□□□ 0.29
TRIM28-213ENST00000598355 RNF40O75150 1001 aa16.86■□□□□ 0.29
TRIM28-213ENST00000598355 LATS1O95835 1130 aa16.86■□□□□ 0.29
TRIM28-213ENST00000598355 CORO1AP31146 461 aaKnown RBP16.86■□□□□ 0.29
TRIM28-213ENST00000598355 HOXA6P31267 233 aa16.86■□□□□ 0.29
TRIM28-213ENST00000598355 HOXD11P31277 338 aaPredicted RBP16.86■□□□□ 0.29
TRIM28-213ENST00000598355 SATB1Q01826 763 aa16.86■□□□□ 0.29
TRIM28-213ENST00000598355 RING1Q06587 406 aa16.86■□□□□ 0.29
TRIM28-213ENST00000598355 FMNL3Q8IVF7 1028 aa16.86■□□□□ 0.29
TRIM28-213ENST00000598355 SCUBE3Q8IX30 993 aa16.86■□□□□ 0.29
TRIM28-213ENST00000598355 CPXM2Q8N436 756 aa16.86■□□□□ 0.29
TRIM28-213ENST00000598355 C1orf131Q8NDD1 294 aaKnown RBP16.86■□□□□ 0.29
TRIM28-213ENST00000598355 RNF139Q8WU17 664 aa16.86■□□□□ 0.29
TRIM28-213ENST00000598355 PIWIL1Q96J94 861 aaKnown RBP16.86■□□□□ 0.29
TRIM28-213ENST00000598355 FAM126AQ9BYI3 521 aaPredicted RBP16.86■□□□□ 0.29
TRIM28-213ENST00000598355 ST7Q9NRC1 585 aa16.86■□□□□ 0.29
TRIM28-213ENST00000598355 FAM207AQ9NSI2 230 aaPredicted RBP16.86■□□□□ 0.29
TRIM28-213ENST00000598355 C2orf42Q9NWW7 574 aa16.86■□□□□ 0.29
TRIM28-213ENST00000598355 AGO1Q9UL18 857 aaKnown RBP16.86■□□□□ 0.29
TRIM28-213ENST00000598355 MUC22E2RYF6 1773 aaPredicted RBP16.86■□□□□ 0.29
TRIM28-213ENST00000598355 GPR179Q6PRD1 2367 aa16.85■□□□□ 0.29
TRIM28-213ENST00000598355 SMTNL1A8MU46 457 aa16.85■□□□□ 0.29
TRIM28-213ENST00000598355 PALM2-AKAP2B1ALY0 433 aaPredicted RBP16.85■□□□□ 0.29
TRIM28-213ENST00000598355 K7EQS6 105 aa16.85■□□□□ 0.29
TRIM28-213ENST00000598355 LILRB5O75023 590 aa16.85■□□□□ 0.29
TRIM28-213ENST00000598355 PENKP01210 267 aaPredicted RBP16.85■□□□□ 0.29
TRIM28-213ENST00000598355 IGLV3-25P01717 112 aa16.85■□□□□ 0.29
TRIM28-213ENST00000598355 CXCL12P48061 93 aa16.85■□□□□ 0.29
TRIM28-213ENST00000598355 EIF4EBP2Q13542 120 aaPredicted RBP16.85■□□□□ 0.29
TRIM28-213ENST00000598355 PTPN20Q4JDL3 420 aa16.85■□□□□ 0.29
TRIM28-213ENST00000598355 OLFML1Q6UWY5 402 aa16.85■□□□□ 0.29
TRIM28-213ENST00000598355 NOP9Q86U38 636 aaKnown RBP16.85■□□□□ 0.29
TRIM28-213ENST00000598355 PASD1Q8IV76 773 aa16.85■□□□□ 0.29
TRIM28-213ENST00000598355 PNKPQ96T60 521 aa16.85■□□□□ 0.29
TRIM28-213ENST00000598355 TRIM62Q9BVG3 475 aa16.85■□□□□ 0.29
TRIM28-213ENST00000598355 MIS12Q9H081 205 aa16.85■□□□□ 0.29
TRIM28-213ENST00000598355 ASNSD1Q9NWL6 643 aa16.85■□□□□ 0.29
TRIM28-213ENST00000598355 SFMBT1Q9UHJ3 866 aa16.85■□□□□ 0.29
TRIM28-213ENST00000598355 NOCTQ9UK39 431 aaKnown RBP16.85■□□□□ 0.29
TRIM28-213ENST00000598355 FBXO10Q9UK96 956 aa16.85■□□□□ 0.29
TRIM28-213ENST00000598355 PCDHGA2Q9Y5H1 932 aa16.85■□□□□ 0.29
TRIM28-213ENST00000598355 GVINP1Q7Z2Y8 2422 aa16.84■□□□□ 0.29
TRIM28-213ENST00000598355 MSI1O43347 362 aaKnown RBP16.84■□□□□ 0.29
TRIM28-213ENST00000598355 TULP3O75386 442 aa16.84■□□□□ 0.29
TRIM28-213ENST00000598355 GLI1P08151 1106 aa16.84■□□□□ 0.29
TRIM28-213ENST00000598355 KRT9P35527 623 aa16.84■□□□□ 0.29
TRIM28-213ENST00000598355 SOX5P35711 763 aa16.84■□□□□ 0.29
TRIM28-213ENST00000598355 CHKAP35790 457 aa16.84■□□□□ 0.29
TRIM28-213ENST00000598355 SLC6A11P48066 632 aa16.84■□□□□ 0.29
TRIM28-213ENST00000598355 POLR2FP61218 127 aaKnown RBP16.84■□□□□ 0.29
TRIM28-213ENST00000598355 UBXN1Q04323 297 aa16.84■□□□□ 0.29
TRIM28-213ENST00000598355 FYB2Q5VWT5 728 aa16.84■□□□□ 0.29
TRIM28-213ENST00000598355 RNF43Q68DV7 783 aa16.84■□□□□ 0.29
TRIM28-213ENST00000598355 ZC3H14Q6PJT7 736 aaKnown RBP16.84■□□□□ 0.29
TRIM28-213ENST00000598355 DQX1Q8TE96 717 aaKnown RBP16.84■□□□□ 0.29
TRIM28-213ENST00000598355 USP33Q8TEY7 942 aa16.84■□□□□ 0.29
TRIM28-213ENST00000598355 SLC39A13Q96H72 371 aa16.84■□□□□ 0.29
TRIM28-213ENST00000598355 PPP1R13BQ96KQ4 1090 aa16.84■□□□□ 0.29
TRIM28-213ENST00000598355 SLC2A13Q96QE2 648 aa16.84■□□□□ 0.29
TRIM28-213ENST00000598355 RTN4Q9NQC3 1192 aaKnown RBP16.84■□□□□ 0.29
TRIM28-213ENST00000598355 CKAP5Q14008 2032 aa16.84■□□□□ 0.29
TRIM28-213ENST00000598355 ZFHX2Q9C0A1 2572 aaPredicted RBP16.84■□□□□ 0.29
TRIM28-213ENST00000598355 KAT7O95251 611 aa16.83■□□□□ 0.28
TRIM28-213ENST00000598355 LSM8O95777 96 aaKnown RBP16.83■□□□□ 0.28
TRIM28-213ENST00000598355 ERBB2P04626 1255 aa16.83■□□□□ 0.28
TRIM28-213ENST00000598355 HMBSP08397 361 aa16.83■□□□□ 0.28
TRIM28-213ENST00000598355 TYRP14679 529 aa16.83■□□□□ 0.28
TRIM28-213ENST00000598355 CDK11BP21127 795 aaKnown RBP16.83■□□□□ 0.28
TRIM28-213ENST00000598355 SCNN1AP37088 669 aa16.83■□□□□ 0.28
TRIM28-213ENST00000598355 GRIA2P42262 883 aa16.83■□□□□ 0.28
TRIM28-213ENST00000598355 KIR2DL1P43626 348 aaPredicted RBP16.83■□□□□ 0.28
TRIM28-213ENST00000598355 GABRB2P47870 512 aa16.83■□□□□ 0.28
TRIM28-213ENST00000598355 CSTF1Q05048 431 aaKnown RBP16.83■□□□□ 0.28
TRIM28-213ENST00000598355 PPP2R5DQ14738 602 aa16.83■□□□□ 0.28
TRIM28-213ENST00000598355 SKOR2Q2VWA4 1001 aaPredicted RBP16.83■□□□□ 0.28
TRIM28-213ENST00000598355 TSSK4Q6SA08 328 aa16.83■□□□□ 0.28
TRIM28-213ENST00000598355 SYT13Q7L8C5 426 aa16.83■□□□□ 0.28
TRIM28-213ENST00000598355 SLC26A9Q7LBE3 791 aa16.83■□□□□ 0.28
TRIM28-213ENST00000598355 ZNF677Q86XU0 584 aa16.83■□□□□ 0.28
TRIM28-213ENST00000598355 DENND1CQ8IV53 801 aa16.83■□□□□ 0.28
TRIM28-213ENST00000598355 SFTPA1Q8IWL2 248 aa16.83■□□□□ 0.28
TRIM28-213ENST00000598355 TERB1Q8NA31 727 aa16.83■□□□□ 0.28
TRIM28-213ENST00000598355 ZNF397Q8NF99 534 aaPredicted RBP16.83■□□□□ 0.28
TRIM28-213ENST00000598355 CCDC26Q8TAB7 109 aa16.83■□□□□ 0.28
TRIM28-213ENST00000598355 GOLGA1Q92805 767 aa16.83■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms