RNA–Protein interactions for RNA: ENST00000586119.1

LIG3-207, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-207ENST00000586119 FBXO10Q9UK96 956 aa12.24□□□□□ -0.45
LIG3-207ENST00000586119 STON1Q9Y6Q2 735 aa12.24□□□□□ -0.45
LIG3-207ENST00000586119 KCNJ18B7U540 433 aa12.23□□□□□ -0.45
LIG3-207ENST00000586119 PDXKO00764 312 aa12.23□□□□□ -0.45
LIG3-207ENST00000586119 PIK3CAP42336 1068 aa12.23□□□□□ -0.45
LIG3-207ENST00000586119 IL12RB1P42701 662 aa12.23□□□□□ -0.45
LIG3-207ENST00000586119 PLA2G4AP47712 749 aa12.23□□□□□ -0.45
LIG3-207ENST00000586119 VAMP7P51809 220 aa12.23□□□□□ -0.45
LIG3-207ENST00000586119 NUCB2P80303 420 aa12.23□□□□□ -0.45
LIG3-207ENST00000586119 PLEKHG6Q3KR16 790 aa12.23□□□□□ -0.45
LIG3-207ENST00000586119 FUT11Q495W5 492 aa12.23□□□□□ -0.45
LIG3-207ENST00000586119 SDE2Q6IQ49 451 aa12.23□□□□□ -0.45
LIG3-207ENST00000586119 NUDT18Q6ZVK8 323 aa12.23□□□□□ -0.45
LIG3-207ENST00000586119 GOLGA5Q8TBA6 731 aa12.23□□□□□ -0.45
LIG3-207ENST00000586119 SORCS1Q8WY21 1168 aa12.23□□□□□ -0.45
LIG3-207ENST00000586119 SEMA4DQ92854 862 aa12.23□□□□□ -0.45
LIG3-207ENST00000586119 IPO9Q96P70 1041 aaKnown RBP12.23□□□□□ -0.45
LIG3-207ENST00000586119 MKRN2Q9H000 416 aaKnown RBP12.23□□□□□ -0.45
LIG3-207ENST00000586119 IL21RQ9HBE5 538 aa12.23□□□□□ -0.45
LIG3-207ENST00000586119 EXOC1Q9NV70 894 aa12.23□□□□□ -0.45
LIG3-207ENST00000586119 RASAL2Q9UJF2 1139 aa12.23□□□□□ -0.45
LIG3-207ENST00000586119 NAGPAQ9UK23 515 aa12.23□□□□□ -0.45
LIG3-207ENST00000586119 RCOR1Q9UKL0 485 aa12.23□□□□□ -0.45
LIG3-207ENST00000586119 MSRB2Q9Y3D2 182 aa12.23□□□□□ -0.45
LIG3-207ENST00000586119 NEUROG3Q9Y4Z2 214 aa12.23□□□□□ -0.45
LIG3-207ENST00000586119 ZFYVE26Q68DK2 2539 aa12.22□□□□□ -0.45
LIG3-207ENST00000586119 DMXL2Q8TDJ6 3036 aa12.22□□□□□ -0.45
LIG3-207ENST00000586119 CABIN1Q9Y6J0 2220 aa12.22□□□□□ -0.45
LIG3-207ENST00000586119 PTPRBP23467 1997 aa12.22□□□□□ -0.45
LIG3-207ENST00000586119 UPK3BL1B0FP48 263 aa12.22□□□□□ -0.45
LIG3-207ENST00000586119 UPK3BL2E5RIL1 263 aa12.22□□□□□ -0.45
LIG3-207ENST00000586119 NDUFS2O75306 463 aa12.22□□□□□ -0.45
LIG3-207ENST00000586119 ZNF217O75362 1048 aa12.22□□□□□ -0.45
LIG3-207ENST00000586119 GJB3O75712 270 aa12.22□□□□□ -0.45
LIG3-207ENST00000586119 CAPNS1P04632 268 aa12.22□□□□□ -0.45
LIG3-207ENST00000586119 P4HA1P13674 534 aa12.22□□□□□ -0.45
LIG3-207ENST00000586119 PFKFB1P16118 471 aa12.22□□□□□ -0.45
LIG3-207ENST00000586119 MFAP3P55082 362 aa12.22□□□□□ -0.45
LIG3-207ENST00000586119 RING1Q06587 406 aa12.22□□□□□ -0.45
LIG3-207ENST00000586119 INCA1Q0VD86 236 aa12.22□□□□□ -0.45
LIG3-207ENST00000586119 EFEMP1Q12805 493 aa12.22□□□□□ -0.45
LIG3-207ENST00000586119 COL9A2Q14055 689 aaPredicted RBP12.22□□□□□ -0.45
LIG3-207ENST00000586119 PREPLQ4J6C6 727 aaPredicted RBP12.22□□□□□ -0.45
LIG3-207ENST00000586119 FYB2Q5VWT5 728 aa12.22□□□□□ -0.45
LIG3-207ENST00000586119 TMEM215Q68D42 235 aa12.22□□□□□ -0.45
LIG3-207ENST00000586119 TAF4BQ92750 862 aa12.22□□□□□ -0.45
LIG3-207ENST00000586119 EEF2KMTQ96G04 330 aa12.22□□□□□ -0.45
LIG3-207ENST00000586119 TOE1Q96GM8 510 aaKnown RBP12.22□□□□□ -0.45
LIG3-207ENST00000586119 GPR174Q9BXC1 333 aa12.22□□□□□ -0.45
LIG3-207ENST00000586119 NT5C1AQ9BXI3 368 aa12.22□□□□□ -0.45
LIG3-207ENST00000586119 DUSP16Q9BY84 665 aa12.22□□□□□ -0.45
LIG3-207ENST00000586119 DNAAF2Q9NVR5 837 aaKnown RBP12.22□□□□□ -0.45
LIG3-207ENST00000586119 WSB2Q9NYS7 404 aaPredicted RBP12.22□□□□□ -0.45
LIG3-207ENST00000586119 DNMT3LQ9UJW3 386 aa12.22□□□□□ -0.45
LIG3-207ENST00000586119 LSM7Q9UK45 103 aaKnown RBP12.22□□□□□ -0.45
LIG3-207ENST00000586119 USP3Q9Y6I4 520 aa12.22□□□□□ -0.45
LIG3-207ENST00000586119 SLCO1B1Q9Y6L6 691 aa12.22□□□□□ -0.45
LIG3-207ENST00000586119 A0A1W2PQD8 194 aa12.21□□□□□ -0.45
LIG3-207ENST00000586119 TULP2O00295 520 aa12.21□□□□□ -0.45
LIG3-207ENST00000586119 IKBKBO14920 756 aa12.21□□□□□ -0.45
LIG3-207ENST00000586119 CILPO75339 1184 aa12.21□□□□□ -0.45
LIG3-207ENST00000586119 PENKP01210 267 aaPredicted RBP12.21□□□□□ -0.45
LIG3-207ENST00000586119 CD6P30203 668 aa12.21□□□□□ -0.45
LIG3-207ENST00000586119 CORO1AP31146 461 aaKnown RBP12.21□□□□□ -0.45
LIG3-207ENST00000586119 HOXD12P35452 270 aa12.21□□□□□ -0.45
LIG3-207ENST00000586119 BNC1Q01954 994 aa12.21□□□□□ -0.45
LIG3-207ENST00000586119 TRIP6Q15654 476 aaKnown RBP12.21□□□□□ -0.45
LIG3-207ENST00000586119 ATL3Q6DD88 541 aa12.21□□□□□ -0.45
LIG3-207ENST00000586119 KLHDC10Q6PID8 442 aa12.21□□□□□ -0.45
LIG3-207ENST00000586119 SLCO6A1Q86UG4 719 aa12.21□□□□□ -0.45
LIG3-207ENST00000586119 CACUL1Q86Y37 369 aa12.21□□□□□ -0.45
LIG3-207ENST00000586119 DENND1CQ8IV53 801 aa12.21□□□□□ -0.45
LIG3-207ENST00000586119 TMEM174Q8WUU8 243 aa12.21□□□□□ -0.45
LIG3-207ENST00000586119 TATDN2Q93075 761 aa12.21□□□□□ -0.45
LIG3-207ENST00000586119 PIWIL1Q96J94 861 aaKnown RBP12.21□□□□□ -0.45
LIG3-207ENST00000586119 HEXIM2Q96MH2 286 aaKnown RBP12.21□□□□□ -0.45
LIG3-207ENST00000586119 PRDM16Q9HAZ2 1276 aa12.21□□□□□ -0.45
LIG3-207ENST00000586119 ITM2CQ9NQX7 267 aa12.21□□□□□ -0.45
LIG3-207ENST00000586119 THAP10Q9P2Z0 257 aaPredicted RBP12.21□□□□□ -0.45
LIG3-207ENST00000586119 AGO1Q9UL18 857 aaKnown RBP12.21□□□□□ -0.45
LIG3-207ENST00000586119 TRAF3IP3Q9Y228 551 aa12.21□□□□□ -0.45
LIG3-207ENST00000586119 FRMD4BQ9Y2L6 1034 aa12.21□□□□□ -0.45
LIG3-207ENST00000586119 PCDHA5Q9Y5H7 936 aa12.21□□□□□ -0.45
LIG3-207ENST00000586119 ATP6V1DQ9Y5K8 247 aa12.21□□□□□ -0.45
LIG3-207ENST00000586119 CKAP5Q14008 2032 aa12.21□□□□□ -0.46
LIG3-207ENST00000586119 ADAMTS20P59510 1910 aa12.21□□□□□ -0.46
LIG3-207ENST00000586119 TMEM131Q92545 1883 aa12.21□□□□□ -0.46
LIG3-207ENST00000586119 GOLGA4Q13439 2230 aaKnown RBP12.21□□□□□ -0.46
LIG3-207ENST00000586119 SLC12A8A0AV02 714 aa12.2□□□□□ -0.46
LIG3-207ENST00000586119 GFRA2O00451 464 aa12.2□□□□□ -0.46
LIG3-207ENST00000586119 ZBTB24O43167 697 aaPredicted RBP12.2□□□□□ -0.46
LIG3-207ENST00000586119 CALUO43852 315 aaPredicted RBP12.2□□□□□ -0.46
LIG3-207ENST00000586119 SYPP08247 313 aa12.2□□□□□ -0.46
LIG3-207ENST00000586119 NR2F2P24468 414 aa12.2□□□□□ -0.46
LIG3-207ENST00000586119 PRKCHP24723 683 aa12.2□□□□□ -0.46
LIG3-207ENST00000586119 DPP6P42658 865 aa12.2□□□□□ -0.46
LIG3-207ENST00000586119 GOLGA8FQ08AF8 430 aa12.2□□□□□ -0.46
LIG3-207ENST00000586119 GOLGA8DPQ0D2H9 430 aa12.2□□□□□ -0.46
LIG3-207ENST00000586119 GRIK2Q13002 908 aa12.2□□□□□ -0.46
LIG3-207ENST00000586119 LRSAM1Q6UWE0 723 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms