RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 TRPC7Q9HCX4 862 aa21.55■■□□□ 1.04
VPS53-210ENST00000571456 ABHD10Q9NUJ1 306 aa21.55■■□□□ 1.04
VPS53-210ENST00000571456 TDP1Q9NUW8 608 aa21.55■■□□□ 1.04
VPS53-210ENST00000571456 SEPT11Q9NVA2 429 aaKnown RBP21.55■■□□□ 1.04
VPS53-210ENST00000571456 ZSCAN32Q9NX65 697 aa21.55■■□□□ 1.04
VPS53-210ENST00000571456 A0A1W2PQH9 124 aa21.54■■□□□ 1.04
VPS53-210ENST00000571456 SSU72P8A0A1W2PR75 194 aa21.54■■□□□ 1.04
VPS53-210ENST00000571456 LTFP02788 710 aa21.54■■□□□ 1.04
VPS53-210ENST00000571456 RARGP13631 454 aa21.54■■□□□ 1.04
VPS53-210ENST00000571456 MMP8P22894 467 aa21.54■■□□□ 1.04
VPS53-210ENST00000571456 GSCP56915 257 aaPredicted RBP21.54■■□□□ 1.04
VPS53-210ENST00000571456 PTPN20Q4JDL3 420 aa21.54■■□□□ 1.04
VPS53-210ENST00000571456 NAA35Q5VZE5 725 aa21.54■■□□□ 1.04
VPS53-210ENST00000571456 BSPRYQ5W0U4 402 aa21.54■■□□□ 1.04
VPS53-210ENST00000571456 HGSNATQ68CP4 663 aa21.54■■□□□ 1.04
VPS53-210ENST00000571456 ARCQ7LC44 396 aa21.54■■□□□ 1.04
VPS53-210ENST00000571456 SCD5Q86SK9 330 aa21.54■■□□□ 1.04
VPS53-210ENST00000571456 SCUBE3Q8IX30 993 aa21.54■■□□□ 1.04
VPS53-210ENST00000571456 DNMT3LQ9UJW3 386 aa21.54■■□□□ 1.04
VPS53-210ENST00000571456 RALGAPA1Q6GYQ0 2036 aa21.54■■□□□ 1.04
VPS53-210ENST00000571456 C2orf78A6NCI8 922 aa21.53■■□□□ 1.04
VPS53-210ENST00000571456 PAPSS1O43252 624 aaPredicted RBP21.53■■□□□ 1.04
VPS53-210ENST00000571456 HSF2BPO75031 334 aa21.53■■□□□ 1.04
VPS53-210ENST00000571456 ADCY5O95622 1261 aa21.53■■□□□ 1.04
VPS53-210ENST00000571456 KPNA1P52294 538 aaPredicted RBP21.53■■□□□ 1.04
VPS53-210ENST00000571456 YWHAZP63104 245 aaKnown RBP21.53■■□□□ 1.04
VPS53-210ENST00000571456 C1QBPQ07021 282 aaKnown RBP21.53■■□□□ 1.04
VPS53-210ENST00000571456 STXBP5Q5T5C0 1151 aa21.53■■□□□ 1.04
VPS53-210ENST00000571456 E4F1Q66K89 784 aaPredicted RBP21.53■■□□□ 1.04
VPS53-210ENST00000571456 SLC26A9Q7LBE3 791 aa21.53■■□□□ 1.04
VPS53-210ENST00000571456 BHLHA9Q7RTU4 235 aa21.53■■□□□ 1.04
VPS53-210ENST00000571456 ZNF571Q7Z3V5 609 aaPredicted RBP21.53■■□□□ 1.04
VPS53-210ENST00000571456 RNF139Q8WU17 664 aa21.53■■□□□ 1.04
VPS53-210ENST00000571456 ZSWIM3Q96MP5 696 aa21.53■■□□□ 1.04
VPS53-210ENST00000571456 NMUR1Q9HB89 426 aa21.53■■□□□ 1.04
VPS53-210ENST00000571456 PARD6AQ9NPB6 346 aa21.53■■□□□ 1.04
VPS53-210ENST00000571456 KANSL1LA0AUZ9 987 aa21.52■■□□□ 1.04
VPS53-210ENST00000571456 YJEFN3A6XGL0 299 aa21.52■■□□□ 1.04
VPS53-210ENST00000571456 E7ENQ6 273 aa21.52■■□□□ 1.04
VPS53-210ENST00000571456 LILRB5O75023 590 aa21.52■■□□□ 1.04
VPS53-210ENST00000571456 GABBR2O75899 941 aa21.52■■□□□ 1.04
VPS53-210ENST00000571456 SLC6A3Q01959 620 aa21.52■■□□□ 1.04
VPS53-210ENST00000571456 DMWDQ09019 674 aa21.52■■□□□ 1.04
VPS53-210ENST00000571456 ACAD10Q6JQN1 1059 aa21.52■■□□□ 1.04
VPS53-210ENST00000571456 RSRC2Q7L4I2 434 aaKnown RBP21.52■■□□□ 1.04
VPS53-210ENST00000571456 MFSD6LQ8IWD5 586 aa21.52■■□□□ 1.04
VPS53-210ENST00000571456 ARL14EPQ8N8R7 260 aaPredicted RBP21.52■■□□□ 1.04
VPS53-210ENST00000571456 CPA5Q8WXQ8 436 aa21.52■■□□□ 1.04
VPS53-210ENST00000571456 TRIM11Q96F44 468 aa21.52■■□□□ 1.04
VPS53-210ENST00000571456 PCDHB18PQ96TA0 734 aa21.52■■□□□ 1.04
VPS53-210ENST00000571456 GRPEL1Q9HAV7 217 aa21.52■■□□□ 1.04
VPS53-210ENST00000571456 POPDC2Q9HBU9 364 aa21.52■■□□□ 1.04
VPS53-210ENST00000571456 THG1LQ9NWX6 298 aaKnown RBP21.52■■□□□ 1.04
VPS53-210ENST00000571456 RRN3Q9NYV6 651 aa21.52■■□□□ 1.04
VPS53-210ENST00000571456 GMEB2Q9UKD1 530 aa21.52■■□□□ 1.04
VPS53-210ENST00000571456 SLC30A4O14863 429 aa21.51■■□□□ 1.03
VPS53-210ENST00000571456 COCHO43405 550 aa21.51■■□□□ 1.03
VPS53-210ENST00000571456 MBL2P11226 248 aaPredicted RBP21.51■■□□□ 1.03
VPS53-210ENST00000571456 PSMC3P17980 439 aa21.51■■□□□ 1.03
VPS53-210ENST00000571456 FCARP24071 287 aa21.51■■□□□ 1.03
VPS53-210ENST00000571456 COG7P83436 770 aa21.51■■□□□ 1.03
VPS53-210ENST00000571456 MAPK8IP2Q13387 824 aaPredicted RBP21.51■■□□□ 1.03
VPS53-210ENST00000571456 C10orf120Q5SQS8 335 aa21.51■■□□□ 1.03
VPS53-210ENST00000571456 OR6B2Q6IFH4 312 aa21.51■■□□□ 1.03
VPS53-210ENST00000571456 MSANTD2Q6P1R3 559 aa21.51■■□□□ 1.03
VPS53-210ENST00000571456 OLFML1Q6UWY5 402 aa21.51■■□□□ 1.03
VPS53-210ENST00000571456 NETO1Q8TDF5 533 aa21.51■■□□□ 1.03
VPS53-210ENST00000571456 NELL1Q92832 810 aa21.51■■□□□ 1.03
VPS53-210ENST00000571456 FGF14Q92915 247 aa21.51■■□□□ 1.03
VPS53-210ENST00000571456 USP13Q92995 863 aaPredicted RBP21.51■■□□□ 1.03
VPS53-210ENST00000571456 FAM149B1Q96BN6 582 aa21.51■■□□□ 1.03
VPS53-210ENST00000571456 CCSER2Q9H7U1 834 aa21.51■■□□□ 1.03
VPS53-210ENST00000571456 ADAM22Q9P0K1 906 aa21.51■■□□□ 1.03
VPS53-210ENST00000571456 NUMBLQ9Y6R0 609 aa21.51■■□□□ 1.03
VPS53-210ENST00000571456 ASPMQ8IZT6 3477 aa21.51■■□□□ 1.03
VPS53-210ENST00000571456 ZZEF1O43149 2961 aa21.51■■□□□ 1.03
VPS53-210ENST00000571456 NRG2O14511 850 aaPredicted RBP21.5■■□□□ 1.03
VPS53-210ENST00000571456 CAPN9O14815 690 aa21.5■■□□□ 1.03
VPS53-210ENST00000571456 RTN2O75298 545 aa21.5■■□□□ 1.03
VPS53-210ENST00000571456 ERBB2P04626 1255 aa21.5■■□□□ 1.03
VPS53-210ENST00000571456 MYBL1P10243 752 aa21.5■■□□□ 1.03
VPS53-210ENST00000571456 SKILP12757 684 aa21.5■■□□□ 1.03
VPS53-210ENST00000571456 FCHO2Q0JRZ9 810 aa21.5■■□□□ 1.03
VPS53-210ENST00000571456 NNTQ13423 1086 aa21.5■■□□□ 1.03
VPS53-210ENST00000571456 ARHGAP29Q52LW3 1261 aa21.5■■□□□ 1.03
VPS53-210ENST00000571456 PARM1Q6UWI2 310 aa21.5■■□□□ 1.03
VPS53-210ENST00000571456 XYLT1Q86Y38 959 aa21.5■■□□□ 1.03
VPS53-210ENST00000571456 SLC30A5Q8TAD4 765 aa21.5■■□□□ 1.03
VPS53-210ENST00000571456 BPIFB1Q8TDL5 484 aa21.5■■□□□ 1.03
VPS53-210ENST00000571456 PANX2Q96RD6 677 aa21.5■■□□□ 1.03
VPS53-210ENST00000571456 DDX23Q9BUQ8 820 aaKnown RBP21.5■■□□□ 1.03
VPS53-210ENST00000571456 OSBPL6Q9BZF3 934 aa21.5■■□□□ 1.03
VPS53-210ENST00000571456 RNF38Q9H0F5 515 aa21.5■■□□□ 1.03
VPS53-210ENST00000571456 OSER1Q9NX31 292 aa21.5■■□□□ 1.03
VPS53-210ENST00000571456 HEPACAM2A8MVW5 462 aa21.49■■□□□ 1.03
VPS53-210ENST00000571456 SLC9A3R1O14745 358 aaPredicted RBP21.49■■□□□ 1.03
VPS53-210ENST00000571456 MAGEA9P43362 315 aa21.49■■□□□ 1.03
VPS53-210ENST00000571456 ADKP55263 362 aaKnown RBP21.49■■□□□ 1.03
VPS53-210ENST00000571456 GPC5P78333 572 aa21.49■■□□□ 1.03
VPS53-210ENST00000571456 USP4Q13107 963 aa21.49■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms