RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 FAM111AQ96PZ2 611 aa13.74□□□□□ -0.21
VPS4A-204ENST00000566354 FDXACB1Q9BRP7 624 aaPredicted RBP13.74□□□□□ -0.21
VPS4A-204ENST00000566354 KATNAL1Q9BW62 490 aa13.74□□□□□ -0.21
VPS4A-204ENST00000566354 IFT122Q9HBG6 1241 aa13.74□□□□□ -0.21
VPS4A-204ENST00000566354 WBP1LQ9NX94 342 aa13.74□□□□□ -0.21
VPS4A-204ENST00000566354 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP13.73□□□□□ -0.21
VPS4A-204ENST00000566354 IQCF3P0C7M6 154 aa13.73□□□□□ -0.21
VPS4A-204ENST00000566354 ESRRAP11474 423 aaPredicted RBP13.73□□□□□ -0.21
VPS4A-204ENST00000566354 PSMC1P62191 440 aaKnown RBP13.73□□□□□ -0.21
VPS4A-204ENST00000566354 NKX3-2P78367 333 aa13.73□□□□□ -0.21
VPS4A-204ENST00000566354 TMEM62Q0P6H9 643 aa13.73□□□□□ -0.21
VPS4A-204ENST00000566354 ACAP1Q15027 740 aa13.73□□□□□ -0.21
VPS4A-204ENST00000566354 KCNA10Q16322 511 aa13.73□□□□□ -0.21
VPS4A-204ENST00000566354 KBTBD12Q3ZCT8 623 aa13.73□□□□□ -0.21
VPS4A-204ENST00000566354 FAM91A1Q658Y4 838 aa13.73□□□□□ -0.21
VPS4A-204ENST00000566354 SDCCAG8Q86SQ7 713 aaPredicted RBP13.73□□□□□ -0.21
VPS4A-204ENST00000566354 ZBTB8OSQ8IWT0 167 aa13.73□□□□□ -0.21
VPS4A-204ENST00000566354 TAB3Q8N5C8 712 aaPredicted RBP13.73□□□□□ -0.21
VPS4A-204ENST00000566354 DDX51Q8N8A6 666 aaKnown RBP eCLIP13.73□□□□□ -0.21
VPS4A-204ENST00000566354 SLAIN1Q8ND83 568 aa13.73□□□□□ -0.21
VPS4A-204ENST00000566354 MTG1Q9BT17 334 aaPredicted RBP13.73□□□□□ -0.21
VPS4A-204ENST00000566354 MRPL4Q9BYD3 311 aaKnown RBP13.73□□□□□ -0.21
VPS4A-204ENST00000566354 SYNCQ9H7C4 482 aa13.73□□□□□ -0.21
VPS4A-204ENST00000566354 RSAD1Q9HA92 442 aa13.73□□□□□ -0.21
VPS4A-204ENST00000566354 TAS2R1Q9NYW7 299 aa13.73□□□□□ -0.21
VPS4A-204ENST00000566354 CNTN3Q9P232 1028 aa13.73□□□□□ -0.21
VPS4A-204ENST00000566354 SUN2Q9UH99 717 aa13.73□□□□□ -0.21
VPS4A-204ENST00000566354 TEX264Q9Y6I9 313 aa13.73□□□□□ -0.21
VPS4A-204ENST00000566354 MBLAC1A4D2B0 266 aaPredicted RBP13.73□□□□□ -0.21
VPS4A-204ENST00000566354 DPPA5A6NC42 116 aa13.73□□□□□ -0.21
VPS4A-204ENST00000566354 INO80B-WBP1J3KQ70 363 aa13.73□□□□□ -0.21
VPS4A-204ENST00000566354 OGTO15294 1046 aa13.73□□□□□ -0.21
VPS4A-204ENST00000566354 ASGR1P07306 291 aa13.73□□□□□ -0.21
VPS4A-204ENST00000566354 CD48P09326 243 aa13.73□□□□□ -0.21
VPS4A-204ENST00000566354 ASPAP45381 313 aa13.73□□□□□ -0.21
VPS4A-204ENST00000566354 OCRLQ01968 901 aa13.73□□□□□ -0.21
VPS4A-204ENST00000566354 FAAP100Q0VG06 881 aa13.73□□□□□ -0.21
VPS4A-204ENST00000566354 CBLBQ13191 982 aa13.73□□□□□ -0.21
VPS4A-204ENST00000566354 MTM1Q13496 603 aa13.73□□□□□ -0.21
VPS4A-204ENST00000566354 ZNF699Q32M78 642 aa13.73□□□□□ -0.21
VPS4A-204ENST00000566354 ZBTB33Q86T24 672 aa13.73□□□□□ -0.21
VPS4A-204ENST00000566354 IGDCC3Q8IVU1 814 aa13.73□□□□□ -0.21
VPS4A-204ENST00000566354 ARHGAP24Q8N264 748 aa13.73□□□□□ -0.21
VPS4A-204ENST00000566354 C7orf31Q8N865 590 aa13.73□□□□□ -0.21
VPS4A-204ENST00000566354 KLHDC9Q8NEP7 349 aa13.73□□□□□ -0.21
VPS4A-204ENST00000566354 SPATA18Q8TC71 538 aa13.73□□□□□ -0.21
VPS4A-204ENST00000566354 TTC17Q96AE7 1141 aa13.73□□□□□ -0.21
VPS4A-204ENST00000566354 INO80BQ9C086 356 aaPredicted RBP13.73□□□□□ -0.21
VPS4A-204ENST00000566354 IQCGQ9H095 443 aaKnown RBP13.73□□□□□ -0.21
VPS4A-204ENST00000566354 FBXO6Q9NRD1 293 aaPredicted RBP13.73□□□□□ -0.21
VPS4A-204ENST00000566354 SDAD1Q9NVU7 687 aaKnown RBP eCLIP13.73□□□□□ -0.21
VPS4A-204ENST00000566354 NMRK1Q9NWW6 199 aa13.73□□□□□ -0.21
VPS4A-204ENST00000566354 FAM155BO75949 473 aa13.72□□□□□ -0.21
VPS4A-204ENST00000566354 RNF8O76064 485 aa13.72□□□□□ -0.21
VPS4A-204ENST00000566354 PRKCBP05771 671 aa13.72□□□□□ -0.21
VPS4A-204ENST00000566354 PYGBP11216 843 aa13.72□□□□□ -0.21
VPS4A-204ENST00000566354 CYP2C9P11712 490 aa13.72□□□□□ -0.21
VPS4A-204ENST00000566354 CD19P15391 556 aa13.72□□□□□ -0.21
VPS4A-204ENST00000566354 BGNP21810 368 aa13.72□□□□□ -0.21
VPS4A-204ENST00000566354 SERPINB4P48594 390 aa13.72□□□□□ -0.21
VPS4A-204ENST00000566354 MBTD1Q05BQ5 628 aa13.72□□□□□ -0.21
VPS4A-204ENST00000566354 SLC34A1Q06495 639 aa13.72□□□□□ -0.21
VPS4A-204ENST00000566354 KPNB1Q14974 876 aaKnown RBP13.72□□□□□ -0.21
VPS4A-204ENST00000566354 RCN1Q15293 331 aa13.72□□□□□ -0.21
VPS4A-204ENST00000566354 ACSBG2Q5FVE4 666 aa13.72□□□□□ -0.21
VPS4A-204ENST00000566354 SNX30Q5VWJ9 437 aa13.72□□□□□ -0.21
VPS4A-204ENST00000566354 CCSAPQ6IQ19 270 aaPredicted RBP13.72□□□□□ -0.21
VPS4A-204ENST00000566354 OXNAD1Q96HP4 312 aaPredicted RBP13.72□□□□□ -0.21
VPS4A-204ENST00000566354 AGAP3Q96P47 875 aa13.72□□□□□ -0.21
VPS4A-204ENST00000566354 SLX1AQ9BQ83 275 aa13.72□□□□□ -0.21
VPS4A-204ENST00000566354 PNPLA8Q9NP80 782 aa13.72□□□□□ -0.21
VPS4A-204ENST00000566354 PCSK1NQ9UHG2 260 aa13.72□□□□□ -0.21
VPS4A-204ENST00000566354 KBTBD13C9JR72 458 aa13.72□□□□□ -0.21
VPS4A-204ENST00000566354 B4GALT5O43286 388 aa13.72□□□□□ -0.21
VPS4A-204ENST00000566354 KPNA6O60684 536 aa13.72□□□□□ -0.21
VPS4A-204ENST00000566354 PDHA1P08559 390 aa13.72□□□□□ -0.21
VPS4A-204ENST00000566354 MYL2P10916 166 aa13.72□□□□□ -0.21
VPS4A-204ENST00000566354 PRMT2P55345 433 aa13.72□□□□□ -0.21
VPS4A-204ENST00000566354 YWHAGP61981 247 aaKnown RBP eCLIP13.72□□□□□ -0.21
VPS4A-204ENST00000566354 KIZQ2M2Z5 673 aa13.72□□□□□ -0.21
VPS4A-204ENST00000566354 TTC39BQ5VTQ0 682 aaPredicted RBP13.72□□□□□ -0.21
VPS4A-204ENST00000566354 SCARA5Q6ZMJ2 495 aa13.72□□□□□ -0.21
VPS4A-204ENST00000566354 SLC26A11Q86WA9 606 aa13.72□□□□□ -0.21
VPS4A-204ENST00000566354 TRIM42Q8IWZ5 723 aa13.72□□□□□ -0.21
VPS4A-204ENST00000566354 NLRP7Q8WX94 980 aa13.72□□□□□ -0.21
VPS4A-204ENST00000566354 FAM136AQ96C01 138 aa13.72□□□□□ -0.21
VPS4A-204ENST00000566354 CALN1Q9BXU9 219 aa13.72□□□□□ -0.21
VPS4A-204ENST00000566354 FRMD8Q9BZ67 464 aaPredicted RBP13.72□□□□□ -0.21
VPS4A-204ENST00000566354 XYLT2Q9H1B5 865 aa13.72□□□□□ -0.21
VPS4A-204ENST00000566354 C2orf40Q9H1Z8 148 aa13.72□□□□□ -0.21
VPS4A-204ENST00000566354 HMX1Q9NP08 348 aaPredicted RBP13.72□□□□□ -0.21
VPS4A-204ENST00000566354 CYTH4Q9UIA0 394 aa13.72□□□□□ -0.21
VPS4A-204ENST00000566354 CPSF3Q9UKF6 684 aaKnown RBP13.72□□□□□ -0.21
VPS4A-204ENST00000566354 BLOC1S6Q9UL45 172 aa13.72□□□□□ -0.21
VPS4A-204ENST00000566354 GINS2Q9Y248 185 aa13.72□□□□□ -0.21
VPS4A-204ENST00000566354 LRCH1Q9Y2L9 728 aa13.72□□□□□ -0.21
VPS4A-204ENST00000566354 C17orf102A2RUQ5 167 aa13.71□□□□□ -0.21
VPS4A-204ENST00000566354 A8MXQ7 604 aa13.71□□□□□ -0.21
VPS4A-204ENST00000566354 COPEO14579 308 aa13.71□□□□□ -0.21
VPS4A-204ENST00000566354 CHADO15335 359 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms