RNA–Protein interactions for RNA: ENST00000558093.1

SPG11-206, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 526 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-206ENST00000558093 VPS45Q9NRW7 570 aa3.95□□□□□ -1.78
SPG11-206ENST00000558093 TRNAU1APQ9NX07 287 aaKnown RBP3.95□□□□□ -1.78
SPG11-206ENST00000558093 PCDHB2Q9Y5E7 798 aa3.95□□□□□ -1.78
SPG11-206ENST00000558093 CYP2D7A0A087X1C5 515 aa3.94□□□□□ -1.78
SPG11-206ENST00000558093 FAM234BA2RU67 622 aa3.94□□□□□ -1.78
SPG11-206ENST00000558093 INO80B-WBP1J3KQ70 363 aa3.94□□□□□ -1.78
SPG11-206ENST00000558093 SRGAP2BP0DMP2 458 aa3.94□□□□□ -1.78
SPG11-206ENST00000558093 PECAM1P16284 738 aaPredicted RBP3.94□□□□□ -1.78
SPG11-206ENST00000558093 EGR1P18146 543 aa3.94□□□□□ -1.78
SPG11-206ENST00000558093 ATP5F1P24539 256 aaPredicted RBP3.94□□□□□ -1.78
SPG11-206ENST00000558093 NEK3P51956 506 aa3.94□□□□□ -1.78
SPG11-206ENST00000558093 WDR5P61964 334 aaKnown RBP3.94□□□□□ -1.78
SPG11-206ENST00000558093 NSUN2Q08J23 767 aaKnown RBP eCLIP3.94□□□□□ -1.78
SPG11-206ENST00000558093 MTAPQ13126 283 aa3.94□□□□□ -1.78
SPG11-206ENST00000558093 CNGA3Q16281 694 aa3.94□□□□□ -1.78
SPG11-206ENST00000558093 SLC35G1Q2M3R5 365 aa3.94□□□□□ -1.78
SPG11-206ENST00000558093 AASDHQ4L235 1098 aaPredicted RBP3.94□□□□□ -1.78
SPG11-206ENST00000558093 TMEM196Q5HYL7 178 aa3.94□□□□□ -1.78
SPG11-206ENST00000558093 TMTC4Q5T4D3 741 aa3.94□□□□□ -1.78
SPG11-206ENST00000558093 PXDC1Q5TGL8 231 aa3.94□□□□□ -1.78
SPG11-206ENST00000558093 RAP1GAP2Q684P5 730 aa3.94□□□□□ -1.78
SPG11-206ENST00000558093 MYD88Q99836 296 aa3.94□□□□□ -1.78
SPG11-206ENST00000558093 C1QTNF7Q9BXJ2 289 aa3.94□□□□□ -1.78
SPG11-206ENST00000558093 NUAK2Q9H093 628 aa3.94□□□□□ -1.78
SPG11-206ENST00000558093 VPS16Q9H269 839 aa3.94□□□□□ -1.78
SPG11-206ENST00000558093 SAP30LQ9HAJ7 183 aa3.94□□□□□ -1.78
SPG11-206ENST00000558093 ARNT2Q9HBZ2 717 aa3.94□□□□□ -1.78
SPG11-206ENST00000558093 TUBA8Q9NY65 449 aaPredicted RBP3.94□□□□□ -1.78
SPG11-206ENST00000558093 RGL1Q9NZL6 768 aa3.94□□□□□ -1.78
SPG11-206ENST00000558093 FZD4Q9ULV1 537 aa3.94□□□□□ -1.78
SPG11-206ENST00000558093 PHTF1Q9UMS5 762 aa3.94□□□□□ -1.78
SPG11-206ENST00000558093 TTC34A8MYJ7 566 aa3.93□□□□□ -1.78
SPG11-206ENST00000558093 E5RJQ4 531 aa3.93□□□□□ -1.78
SPG11-206ENST00000558093 KCNQ3O43525 872 aa3.93□□□□□ -1.78
SPG11-206ENST00000558093 HMGB1P09429 215 aaKnown RBP3.93□□□□□ -1.78
SPG11-206ENST00000558093 MATN1P21941 496 aa3.93□□□□□ -1.78
SPG11-206ENST00000558093 EEF1GP26641 437 aaKnown RBP3.93□□□□□ -1.78
SPG11-206ENST00000558093 GABRB3P28472 473 aa3.93□□□□□ -1.78
SPG11-206ENST00000558093 PTGER1P34995 402 aa3.93□□□□□ -1.78
SPG11-206ENST00000558093 IGHMBP2P38935 993 aaKnown RBP3.93□□□□□ -1.78
SPG11-206ENST00000558093 TM4SF4P48230 202 aa3.93□□□□□ -1.78
SPG11-206ENST00000558093 VPS41P49754 854 aa3.93□□□□□ -1.78
SPG11-206ENST00000558093 SSBP2P81877 361 aaPredicted RBP3.93□□□□□ -1.78
SPG11-206ENST00000558093 ZNF91Q05481 1191 aa3.93□□□□□ -1.78
SPG11-206ENST00000558093 SEMA3BQ13214 749 aa3.93□□□□□ -1.78
SPG11-206ENST00000558093 DNASE1L3Q13609 305 aa3.93□□□□□ -1.78
SPG11-206ENST00000558093 ATP1A4Q13733 1029 aa3.93□□□□□ -1.78
SPG11-206ENST00000558093 DAZAP2Q15038 168 aaPredicted RBP3.93□□□□□ -1.78
SPG11-206ENST00000558093 TRIP6Q15654 476 aaKnown RBP3.93□□□□□ -1.78
SPG11-206ENST00000558093 Q4G0T1 1027 aa3.93□□□□□ -1.78
SPG11-206ENST00000558093 MEX3CQ5U5Q3 659 aaKnown RBP3.93□□□□□ -1.78
SPG11-206ENST00000558093 IZUMO3Q5VZ72 239 aa3.93□□□□□ -1.78
SPG11-206ENST00000558093 TLDC1Q6P9B6 456 aa3.93□□□□□ -1.78
SPG11-206ENST00000558093 KIAA0408Q6ZU52 694 aa3.93□□□□□ -1.78
SPG11-206ENST00000558093 KRT27Q7Z3Y8 459 aa3.93□□□□□ -1.78
SPG11-206ENST00000558093 BRI3BPQ8WY22 251 aa3.93□□□□□ -1.78
SPG11-206ENST00000558093 PMM1Q92871 262 aa3.93□□□□□ -1.78
SPG11-206ENST00000558093 MAP4K1Q92918 833 aa3.93□□□□□ -1.78
SPG11-206ENST00000558093 PRR11Q96HE9 360 aaPredicted RBP3.93□□□□□ -1.78
SPG11-206ENST00000558093 WDR24Q96S15 920 aa3.93□□□□□ -1.78
SPG11-206ENST00000558093 GAR1Q9NY12 217 aaKnown RBP3.93□□□□□ -1.78
SPG11-206ENST00000558093 BTBD3Q9Y2F9 522 aa3.93□□□□□ -1.78
SPG11-206ENST00000558093 PCDHGB2Q9Y5G2 931 aa3.93□□□□□ -1.78
SPG11-206ENST00000558093 ZNF521Q96K83 1311 aa3.93□□□□□ -1.78
SPG11-206ENST00000558093 ADAM10O14672 748 aa3.92□□□□□ -1.78
SPG11-206ENST00000558093 TP73O15350 636 aa3.92□□□□□ -1.78
SPG11-206ENST00000558093 INPPL1O15357 1258 aa3.92□□□□□ -1.78
SPG11-206ENST00000558093 FGF18O76093 207 aa3.92□□□□□ -1.78
SPG11-206ENST00000558093 IFIT2P09913 472 aaKnown RBP3.92□□□□□ -1.78
SPG11-206ENST00000558093 MMP8P22894 467 aa3.92□□□□□ -1.78
SPG11-206ENST00000558093 SFPQP23246 707 aaKnown RBP eCLIP3.92□□□□□ -1.78
SPG11-206ENST00000558093 YPEL5P62699 121 aa3.92□□□□□ -1.78
SPG11-206ENST00000558093 ID2Q02363 134 aa3.92□□□□□ -1.78
SPG11-206ENST00000558093 CBFBQ13951 182 aa3.92□□□□□ -1.78
SPG11-206ENST00000558093 KCNJ12Q14500 433 aa3.92□□□□□ -1.78
SPG11-206ENST00000558093 SEC23BQ15437 767 aa3.92□□□□□ -1.78
SPG11-206ENST00000558093 MAPKAPK3Q16644 382 aa3.92□□□□□ -1.78
SPG11-206ENST00000558093 SLC9C1Q4G0N8 1177 aa3.92□□□□□ -1.78
SPG11-206ENST00000558093 EPHA10Q5JZY3 1008 aa3.92□□□□□ -1.78
SPG11-206ENST00000558093 ZNF425Q6IV72 752 aa3.92□□□□□ -1.78
SPG11-206ENST00000558093 SHC4Q6S5L8 630 aa3.92□□□□□ -1.78
SPG11-206ENST00000558093 C1QL2Q7Z5L3 287 aa3.92□□□□□ -1.78
SPG11-206ENST00000558093 SRLQ86TD4 932 aa3.92□□□□□ -1.78
SPG11-206ENST00000558093 RASGRP3Q8IV61 690 aa3.92□□□□□ -1.78
SPG11-206ENST00000558093 CLASRPQ8N2M8 674 aaKnown RBP3.92□□□□□ -1.78
SPG11-206ENST00000558093 NANOGP1Q8N7R0 232 aa3.92□□□□□ -1.78
SPG11-206ENST00000558093 GLIS1Q8NBF1 620 aa3.92□□□□□ -1.78
SPG11-206ENST00000558093 ACRBPQ8NEB7 543 aa3.92□□□□□ -1.78
SPG11-206ENST00000558093 RNF26Q9BY78 433 aaPredicted RBP3.92□□□□□ -1.78
SPG11-206ENST00000558093 ABHD10Q9NUJ1 306 aa3.92□□□□□ -1.78
SPG11-206ENST00000558093 HEMK1Q9Y5R4 338 aaPredicted RBP3.92□□□□□ -1.78
SPG11-206ENST00000558093 COL3A1P02461 1466 aaPredicted RBP3.92□□□□□ -1.78
SPG11-206ENST00000558093 J3KTA2 159 aa3.91□□□□□ -1.78
SPG11-206ENST00000558093 FCHO1O14526 889 aa3.91□□□□□ -1.78
SPG11-206ENST00000558093 HNRNPDLO14979 420 aaKnown RBP3.91□□□□□ -1.78
SPG11-206ENST00000558093 USP12O75317 370 aa3.91□□□□□ -1.78
SPG11-206ENST00000558093 BMP15O95972 392 aa3.91□□□□□ -1.78
SPG11-206ENST00000558093 TOP3BO95985 862 aaKnown RBP3.91□□□□□ -1.78
SPG11-206ENST00000558093 CYP19A1P11511 503 aaPredicted RBP3.91□□□□□ -1.78
SPG11-206ENST00000558093 ALADP13716 330 aa3.91□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms