RNA–Protein interactions for RNA: ENST00000556768.5

SCFD1-222, Transcript of sec1 family domain containing 1, humanhuman

TSL 1 (best)

Gene SCFD1, Length 1,829 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-222ENST00000556768 LPAL2Q16609 132 aa7.7□□□□□ -1.18
SCFD1-222ENST00000556768 TPD52L1Q16890 204 aaPredicted RBP7.7□□□□□ -1.18
SCFD1-222ENST00000556768 HSF5Q4G112 596 aaPredicted RBP7.7□□□□□ -1.18
SCFD1-222ENST00000556768 USP39Q53GS9 565 aaKnown RBP7.7□□□□□ -1.18
SCFD1-222ENST00000556768 LY6G5CQ5SRR4 150 aa7.7□□□□□ -1.18
SCFD1-222ENST00000556768 SDE2Q6IQ49 451 aa7.7□□□□□ -1.18
SCFD1-222ENST00000556768 HTR3DQ70Z44 454 aa7.7□□□□□ -1.18
SCFD1-222ENST00000556768 CCDC186Q7Z3E2 898 aa7.7□□□□□ -1.18
SCFD1-222ENST00000556768 CACNA2D4Q7Z3S7 1137 aa7.7□□□□□ -1.18
SCFD1-222ENST00000556768 TRMT11Q7Z4G4 463 aaKnown RBP7.7□□□□□ -1.18
SCFD1-222ENST00000556768 C11orf74Q86VG3 221 aa7.7□□□□□ -1.18
SCFD1-222ENST00000556768 WDR5BQ86VZ2 330 aa7.7□□□□□ -1.18
SCFD1-222ENST00000556768 ZC3H3Q8IXZ2 948 aaKnown RBP7.7□□□□□ -1.18
SCFD1-222ENST00000556768 SIX6OS1Q8N1H7 587 aa7.7□□□□□ -1.18
SCFD1-222ENST00000556768 DCLK2Q8N568 766 aa7.7□□□□□ -1.18
SCFD1-222ENST00000556768 SLC4A11Q8NBS3 891 aa7.7□□□□□ -1.18
SCFD1-222ENST00000556768 ZMIZ2Q8NF64 920 aa7.7□□□□□ -1.18
SCFD1-222ENST00000556768 TSTD1Q8NFU3 115 aa7.7□□□□□ -1.18
SCFD1-222ENST00000556768 WHAMMQ8TF30 809 aa7.7□□□□□ -1.18
SCFD1-222ENST00000556768 RNF139Q8WU17 664 aa7.7□□□□□ -1.18
SCFD1-222ENST00000556768 DUSP9Q99956 384 aaKnown RBP7.7□□□□□ -1.18
SCFD1-222ENST00000556768 SRRTQ9BXP5 876 aaKnown RBP7.7□□□□□ -1.18
SCFD1-222ENST00000556768 DCLK3Q9C098 648 aa7.7□□□□□ -1.18
SCFD1-222ENST00000556768 SPHK2Q9NRA0 654 aa7.7□□□□□ -1.18
SCFD1-222ENST00000556768 CACNA1IQ9P0X4 2223 aa7.7□□□□□ -1.18
SCFD1-222ENST00000556768 DCHS1Q96JQ0 3298 aa7.7□□□□□ -1.18
SCFD1-222ENST00000556768 GPR179Q6PRD1 2367 aa7.7□□□□□ -1.18
SCFD1-222ENST00000556768 SPTBN4Q9H254 2564 aa7.69□□□□□ -1.18
SCFD1-222ENST00000556768 A0A1W2PQH9 124 aa7.69□□□□□ -1.18
SCFD1-222ENST00000556768 AXIN1O15169 862 aa7.69□□□□□ -1.18
SCFD1-222ENST00000556768 HRO43593 1189 aa7.69□□□□□ -1.18
SCFD1-222ENST00000556768 LRP3O75074 770 aa7.69□□□□□ -1.18
SCFD1-222ENST00000556768 GADD45BO75293 160 aaPredicted RBP7.69□□□□□ -1.18
SCFD1-222ENST00000556768 KAT7O95251 611 aa7.69□□□□□ -1.18
SCFD1-222ENST00000556768 ZBED1O96006 694 aa7.69□□□□□ -1.18
SCFD1-222ENST00000556768 AFPP02771 609 aaKnown RBP7.69□□□□□ -1.18
SCFD1-222ENST00000556768 VDRP11473 427 aa7.69□□□□□ -1.18
SCFD1-222ENST00000556768 TDGF1P13385 188 aa7.69□□□□□ -1.18
SCFD1-222ENST00000556768 PXNP49023 591 aaPredicted RBP7.69□□□□□ -1.18
SCFD1-222ENST00000556768 DGKEP52429 567 aa7.69□□□□□ -1.18
SCFD1-222ENST00000556768 BST2Q10589 180 aaKnown RBP7.69□□□□□ -1.18
SCFD1-222ENST00000556768 E2F5Q15329 346 aa7.69□□□□□ -1.18
SCFD1-222ENST00000556768 ELF2Q15723 593 aa7.69□□□□□ -1.18
SCFD1-222ENST00000556768 CAMK4Q16566 473 aa7.69□□□□□ -1.18
SCFD1-222ENST00000556768 ARHGAP17Q68EM7 881 aa7.69□□□□□ -1.18
SCFD1-222ENST00000556768 TMEM270Q6UE05 265 aa7.69□□□□□ -1.18
SCFD1-222ENST00000556768 PIGZQ86VD9 579 aa7.69□□□□□ -1.18
SCFD1-222ENST00000556768 MIB1Q86YT6 1006 aa7.69□□□□□ -1.18
SCFD1-222ENST00000556768 BBS7Q8IWZ6 715 aa7.69□□□□□ -1.18
SCFD1-222ENST00000556768 ZNF276Q8N554 614 aa7.69□□□□□ -1.18
SCFD1-222ENST00000556768 GOLGA1Q92805 767 aa7.69□□□□□ -1.18
SCFD1-222ENST00000556768 FAM81BQ96LP2 452 aa7.69□□□□□ -1.18
SCFD1-222ENST00000556768 POLMQ9NP87 494 aaPredicted RBP7.69□□□□□ -1.18
SCFD1-222ENST00000556768 MTPAPQ9NVV4 582 aaKnown RBP eCLIP7.69□□□□□ -1.18
SCFD1-222ENST00000556768 TSPAN16Q9UKR8 245 aa7.69□□□□□ -1.18
SCFD1-222ENST00000556768 CTNND2Q9UQB3 1225 aa7.69□□□□□ -1.18
SCFD1-222ENST00000556768 PCDHB4Q9Y5E5 795 aa7.69□□□□□ -1.18
SCFD1-222ENST00000556768 USP3Q9Y6I4 520 aa7.69□□□□□ -1.18
SCFD1-222ENST00000556768 MYH15Q9Y2K3 1946 aa7.69□□□□□ -1.18
SCFD1-222ENST00000556768 ESPNB1AK53 854 aa7.68□□□□□ -1.18
SCFD1-222ENST00000556768 HHLA1C9JL84 531 aa7.68□□□□□ -1.18
SCFD1-222ENST00000556768 XPO1O14980 1071 aaKnown RBP7.68□□□□□ -1.18
SCFD1-222ENST00000556768 RHOBTB1O94844 696 aa7.68□□□□□ -1.18
SCFD1-222ENST00000556768 CYBBP04839 570 aa7.68□□□□□ -1.18
SCFD1-222ENST00000556768 PAEPP09466 180 aa7.68□□□□□ -1.18
SCFD1-222ENST00000556768 SETSIPP0DME0 302 aa7.68□□□□□ -1.18
SCFD1-222ENST00000556768 OPRD1P41143 372 aa7.68□□□□□ -1.18
SCFD1-222ENST00000556768 HARS2P49590 506 aaKnown RBP7.68□□□□□ -1.18
SCFD1-222ENST00000556768 TKTL1P51854 596 aa7.68□□□□□ -1.18
SCFD1-222ENST00000556768 STX17P56962 302 aa7.68□□□□□ -1.18
SCFD1-222ENST00000556768 BYSLQ13895 437 aaKnown RBP7.68□□□□□ -1.18
SCFD1-222ENST00000556768 PUM1Q14671 1186 aaKnown RBP eCLIP7.68□□□□□ -1.18
SCFD1-222ENST00000556768 EOGTQ5NDL2 527 aa7.68□□□□□ -1.18
SCFD1-222ENST00000556768 TTI2Q6NXR4 508 aa7.68□□□□□ -1.18
SCFD1-222ENST00000556768 ERMP1Q7Z2K6 904 aa7.68□□□□□ -1.18
SCFD1-222ENST00000556768 GPRIN1Q7Z2K8 1008 aa7.68□□□□□ -1.18
SCFD1-222ENST00000556768 TTC30AQ86WT1 665 aa7.68□□□□□ -1.18
SCFD1-222ENST00000556768 NAT16Q8N8M0 369 aa7.68□□□□□ -1.18
SCFD1-222ENST00000556768 MLKLQ8NB16 471 aa7.68□□□□□ -1.18
SCFD1-222ENST00000556768 GAB3Q8WWW8 586 aa7.68□□□□□ -1.18
SCFD1-222ENST00000556768 LOXL4Q96JB6 756 aa7.68□□□□□ -1.18
SCFD1-222ENST00000556768 HHIPQ96QV1 700 aa7.68□□□□□ -1.18
SCFD1-222ENST00000556768 BBS2Q9BXC9 721 aa7.68□□□□□ -1.18
SCFD1-222ENST00000556768 RBCK1Q9BYM8 510 aa7.68□□□□□ -1.18
SCFD1-222ENST00000556768 OLA1Q9NTK5 396 aaKnown RBP7.68□□□□□ -1.18
SCFD1-222ENST00000556768 EBF1Q9UH73 591 aa7.68□□□□□ -1.18
SCFD1-222ENST00000556768 DACH1Q9UI36 760 aa7.68□□□□□ -1.18
SCFD1-222ENST00000556768 A0A0A0MRY4 1105 aa7.68□□□□□ -1.18
SCFD1-222ENST00000556768 NEDD8-MDP1E9PL57 170 aa7.68□□□□□ -1.18
SCFD1-222ENST00000556768 K7EQS6 105 aa7.68□□□□□ -1.18
SCFD1-222ENST00000556768 HOXC11O43248 304 aaPredicted RBP7.68□□□□□ -1.18
SCFD1-222ENST00000556768 TYRP14679 529 aa7.68□□□□□ -1.18
SCFD1-222ENST00000556768 CDK11BP21127 795 aaKnown RBP7.68□□□□□ -1.18
SCFD1-222ENST00000556768 GBP1P32455 592 aa7.68□□□□□ -1.18
SCFD1-222ENST00000556768 YWHAGP61981 247 aaKnown RBP eCLIP7.68□□□□□ -1.18
SCFD1-222ENST00000556768 GCNT1Q02742 428 aa7.68□□□□□ -1.18
SCFD1-222ENST00000556768 DMWDQ09019 674 aa7.68□□□□□ -1.18
SCFD1-222ENST00000556768 EFEMP1Q12805 493 aa7.68□□□□□ -1.18
SCFD1-222ENST00000556768 CRY1Q16526 586 aa7.68□□□□□ -1.18
SCFD1-222ENST00000556768 GOLGA7BQ2TAP0 167 aa7.68□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms