RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 ANKRD45Q5TZF3 282 aa4.74□□□□□ -1.65
VPS29-205ENST00000548539 LVRNQ6Q4G3 990 aa4.74□□□□□ -1.65
VPS29-205ENST00000548539 CYP26C1Q6V0L0 522 aa4.74□□□□□ -1.65
VPS29-205ENST00000548539 MMS22LQ6ZRQ5 1243 aa4.74□□□□□ -1.65
VPS29-205ENST00000548539 C2CD5Q86YS7 1000 aa4.74□□□□□ -1.65
VPS29-205ENST00000548539 FTSJ3Q8IY81 847 aaKnown RBP4.74□□□□□ -1.65
VPS29-205ENST00000548539 NRSN1Q8IZ57 195 aa4.74□□□□□ -1.65
VPS29-205ENST00000548539 SUN3Q8TAQ9 357 aa4.74□□□□□ -1.65
VPS29-205ENST00000548539 AFG1LQ8WV93 481 aa4.74□□□□□ -1.65
VPS29-205ENST00000548539 MCRS1Q96EZ8 462 aa4.74□□□□□ -1.65
VPS29-205ENST00000548539 FBXL20Q96IG2 436 aa4.74□□□□□ -1.65
VPS29-205ENST00000548539 TRAPPC9Q96Q05 1148 aa4.74□□□□□ -1.65
VPS29-205ENST00000548539 BRD8Q9H0E9 1235 aa4.74□□□□□ -1.65
VPS29-205ENST00000548539 TAF1DQ9H5J8 278 aaPredicted RBP4.74□□□□□ -1.65
VPS29-205ENST00000548539 ELAC1Q9H777 363 aaKnown RBP4.74□□□□□ -1.65
VPS29-205ENST00000548539 FEM1BQ9UK73 627 aa4.74□□□□□ -1.65
VPS29-205ENST00000548539 LZTS1Q9Y250 596 aa4.74□□□□□ -1.65
VPS29-205ENST00000548539 ADGRA2Q96PE1 1338 aa4.73□□□□□ -1.65
VPS29-205ENST00000548539 FER1L4A9Z1Z3 1794 aa4.73□□□□□ -1.65
VPS29-205ENST00000548539 POLR2AP24928 1970 aaKnown RBP4.73□□□□□ -1.65
VPS29-205ENST00000548539 LRRC3CA6NJW4 275 aa4.73□□□□□ -1.65
VPS29-205ENST00000548539 YY2O15391 372 aa4.73□□□□□ -1.65
VPS29-205ENST00000548539 NCAM2O15394 837 aa4.73□□□□□ -1.65
VPS29-205ENST00000548539 SLC16A3O15427 465 aaKnown RBP4.73□□□□□ -1.65
VPS29-205ENST00000548539 DHHO43323 396 aa4.73□□□□□ -1.65
VPS29-205ENST00000548539 RPP40O75818 363 aaKnown RBP4.73□□□□□ -1.65
VPS29-205ENST00000548539 C1QL1O75973 258 aa4.73□□□□□ -1.65
VPS29-205ENST00000548539 WDR47O94967 919 aa4.73□□□□□ -1.65
VPS29-205ENST00000548539 ONECUT2O95948 504 aa4.73□□□□□ -1.65
VPS29-205ENST00000548539 JUPP14923 745 aa4.73□□□□□ -1.65
VPS29-205ENST00000548539 RARRES1P49788 294 aa4.73□□□□□ -1.65
VPS29-205ENST00000548539 POLE2P56282 527 aa4.73□□□□□ -1.65
VPS29-205ENST00000548539 RPS6KA2Q15349 733 aa4.73□□□□□ -1.65
VPS29-205ENST00000548539 ADCK5Q3MIX3 580 aa4.73□□□□□ -1.65
VPS29-205ENST00000548539 TMEM196Q5HYL7 178 aa4.73□□□□□ -1.65
VPS29-205ENST00000548539 CCDC70Q6NSX1 233 aa4.73□□□□□ -1.65
VPS29-205ENST00000548539 VWA1Q6PCB0 445 aa4.73□□□□□ -1.65
VPS29-205ENST00000548539 DTX2Q86UW9 622 aa4.73□□□□□ -1.65
VPS29-205ENST00000548539 TTC30AQ86WT1 665 aa4.73□□□□□ -1.65
VPS29-205ENST00000548539 CLASRPQ8N2M8 674 aaKnown RBP4.73□□□□□ -1.65
VPS29-205ENST00000548539 TFAP2BQ92481 460 aa4.73□□□□□ -1.65
VPS29-205ENST00000548539 C3orf49Q96BT1 292 aa4.73□□□□□ -1.65
VPS29-205ENST00000548539 Q96MF0 132 aa4.73□□□□□ -1.65
VPS29-205ENST00000548539 WDR24Q96S15 920 aa4.73□□□□□ -1.65
VPS29-205ENST00000548539 DPCDQ9BVM2 203 aaPredicted RBP4.73□□□□□ -1.65
VPS29-205ENST00000548539 ZCWPW1Q9H0M4 648 aa4.73□□□□□ -1.65
VPS29-205ENST00000548539 SEPSECSQ9HD40 501 aaKnown RBP4.73□□□□□ -1.65
VPS29-205ENST00000548539 SAYSD1Q9NPB0 183 aa4.73□□□□□ -1.65
VPS29-205ENST00000548539 KCTD5Q9NXV2 234 aa4.73□□□□□ -1.65
VPS29-205ENST00000548539 STEAP1Q9UHE8 339 aa4.73□□□□□ -1.65
VPS29-205ENST00000548539 CCNL1Q9UK58 526 aaPredicted RBP4.73□□□□□ -1.65
VPS29-205ENST00000548539 DAPP1Q9UN19 280 aa4.73□□□□□ -1.65
VPS29-205ENST00000548539 LRRFIP2Q9Y608 721 aaKnown RBP4.73□□□□□ -1.65
VPS29-205ENST00000548539 KIF28PB7ZC32 967 aa4.72□□□□□ -1.65
VPS29-205ENST00000548539 H0Y3Z8 333 aa4.72□□□□□ -1.65
VPS29-205ENST00000548539 PSMD9O00233 223 aa4.72□□□□□ -1.65
VPS29-205ENST00000548539 KRT38O76015 456 aa4.72□□□□□ -1.65
VPS29-205ENST00000548539 CER1O95813 267 aa4.72□□□□□ -1.65
VPS29-205ENST00000548539 POLBP06746 335 aa4.72□□□□□ -1.65
VPS29-205ENST00000548539 IL6RP08887 468 aaPredicted RBP4.72□□□□□ -1.65
VPS29-205ENST00000548539 TMEM225BP0DP42 221 aa4.72□□□□□ -1.65
VPS29-205ENST00000548539 CKMT1AP12532 417 aa4.72□□□□□ -1.65
VPS29-205ENST00000548539 CD53P19397 219 aa4.72□□□□□ -1.65
VPS29-205ENST00000548539 RXRAP19793 462 aa4.72□□□□□ -1.65
VPS29-205ENST00000548539 CST5P28325 142 aaPredicted RBP4.72□□□□□ -1.65
VPS29-205ENST00000548539 ADD2P35612 726 aa4.72□□□□□ -1.65
VPS29-205ENST00000548539 CACNA2D1P54289 1103 aa4.72□□□□□ -1.65
VPS29-205ENST00000548539 PDE1AP54750 535 aa4.72□□□□□ -1.65
VPS29-205ENST00000548539 NXPH1P58417 271 aa4.72□□□□□ -1.65
VPS29-205ENST00000548539 EIF4A1P60842 406 aaKnown RBP4.72□□□□□ -1.65
VPS29-205ENST00000548539 BFSP2Q13515 415 aa4.72□□□□□ -1.65
VPS29-205ENST00000548539 CSHL1Q14406 222 aa4.72□□□□□ -1.65
VPS29-205ENST00000548539 SLC4A8Q2Y0W8 1093 aa4.72□□□□□ -1.65
VPS29-205ENST00000548539 P3H2Q8IVL5 708 aa4.72□□□□□ -1.65
VPS29-205ENST00000548539 LNX2Q8N448 690 aa4.72□□□□□ -1.65
VPS29-205ENST00000548539 PNISRQ8TF01 805 aaKnown RBP4.72□□□□□ -1.65
VPS29-205ENST00000548539 WDR60Q8WVS4 1066 aa4.72□□□□□ -1.65
VPS29-205ENST00000548539 SOCS4Q8WXH5 440 aa4.72□□□□□ -1.65
VPS29-205ENST00000548539 FUBP1Q96AE4 644 aaKnown RBP4.72□□□□□ -1.65
VPS29-205ENST00000548539 AIFM2Q9BRQ8 373 aa4.72□□□□□ -1.65
VPS29-205ENST00000548539 VPS16Q9H269 839 aa4.72□□□□□ -1.65
VPS29-205ENST00000548539 GGA3Q9NZ52 723 aa4.72□□□□□ -1.65
VPS29-205ENST00000548539 NKX1-2Q9UD57 310 aaPredicted RBP4.72□□□□□ -1.65
VPS29-205ENST00000548539 PNMA2Q9UL42 364 aa4.72□□□□□ -1.65
VPS29-205ENST00000548539 COL15A1P39059 1388 aa4.72□□□□□ -1.65
VPS29-205ENST00000548539 SETD1BQ9UPS6 1966 aaKnown RBP4.71□□□□□ -1.66
VPS29-205ENST00000548539 FAM90A18PA6NE21 464 aa4.71□□□□□ -1.66
VPS29-205ENST00000548539 FAM90A16PA6NEW6 464 aa4.71□□□□□ -1.66
VPS29-205ENST00000548539 FAM90A9PA6NNJ1 464 aa4.71□□□□□ -1.66
VPS29-205ENST00000548539 FAM90A5PA8MXJ8 464 aa4.71□□□□□ -1.66
VPS29-205ENST00000548539 AP4M1O00189 453 aa4.71□□□□□ -1.66
VPS29-205ENST00000548539 PROM1O43490 865 aa4.71□□□□□ -1.66
VPS29-205ENST00000548539 PEX1O43933 1283 aa4.71□□□□□ -1.66
VPS29-205ENST00000548539 CBFA2T3O75081 653 aa4.71□□□□□ -1.66
VPS29-205ENST00000548539 PROP1O75360 226 aa4.71□□□□□ -1.66
VPS29-205ENST00000548539 FAM90A15PP0C7V4 464 aa4.71□□□□□ -1.66
VPS29-205ENST00000548539 FAM90A14PP0C7W9 464 aa4.71□□□□□ -1.66
VPS29-205ENST00000548539 NR2F6P10588 404 aa4.71□□□□□ -1.66
VPS29-205ENST00000548539 PEPDP12955 493 aa4.71□□□□□ -1.66
VPS29-205ENST00000548539 GSTM5P46439 218 aa4.71□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms