RNA–Protein interactions for RNA: ENST00000537408.1

CLSTN3-207, Transcript of calsyntenin 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,296 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-207ENST00000537408 ISOC1Q96CN7 298 aa11.23□□□□□ -0.61
CLSTN3-207ENST00000537408 SERPINI1Q99574 410 aa11.23□□□□□ -0.61
CLSTN3-207ENST00000537408 SH3GLB2Q9NR46 395 aa11.23□□□□□ -0.61
CLSTN3-207ENST00000537408 DDX56Q9NY93 547 aaKnown RBP11.23□□□□□ -0.61
CLSTN3-207ENST00000537408 DDX60Q8IY21 1712 aaKnown RBP11.23□□□□□ -0.61
CLSTN3-207ENST00000537408 A0A087WXM4 84 aa11.23□□□□□ -0.61
CLSTN3-207ENST00000537408 DDX39AO00148 427 aaKnown RBP11.23□□□□□ -0.61
CLSTN3-207ENST00000537408 AP3B1O00203 1094 aa11.23□□□□□ -0.61
CLSTN3-207ENST00000537408 IDH3BO43837 385 aa11.23□□□□□ -0.61
CLSTN3-207ENST00000537408 KLHL41O60662 606 aa11.23□□□□□ -0.61
CLSTN3-207ENST00000537408 KLHL2O95198 593 aa11.23□□□□□ -0.61
CLSTN3-207ENST00000537408 KRT5P13647 590 aa11.23□□□□□ -0.61
CLSTN3-207ENST00000537408 TECP42680 631 aa11.23□□□□□ -0.61
CLSTN3-207ENST00000537408 MARSP56192 900 aaKnown RBP11.23□□□□□ -0.61
CLSTN3-207ENST00000537408 FOXD4Q12950 439 aaPredicted RBP11.23□□□□□ -0.61
CLSTN3-207ENST00000537408 CYP2A13Q16696 494 aa11.23□□□□□ -0.61
CLSTN3-207ENST00000537408 C4orf22Q6V702 233 aa11.23□□□□□ -0.61
CLSTN3-207ENST00000537408 C16orf86Q6ZW13 317 aa11.23□□□□□ -0.61
CLSTN3-207ENST00000537408 CRLF3Q8IUI8 442 aa11.23□□□□□ -0.61
CLSTN3-207ENST00000537408 TCP10LQ8TDR4 215 aa11.23□□□□□ -0.61
CLSTN3-207ENST00000537408 RNF38Q9H0F5 515 aa11.23□□□□□ -0.61
CLSTN3-207ENST00000537408 PCDHAC2Q9Y5I4 1007 aa11.23□□□□□ -0.61
CLSTN3-207ENST00000537408 COL1A1P02452 1464 aaPredicted RBP11.23□□□□□ -0.61
CLSTN3-207ENST00000537408 GOLGA8MH3BSY2 632 aa11.23□□□□□ -0.61
CLSTN3-207ENST00000537408 M0QZ92 97 aa11.23□□□□□ -0.61
CLSTN3-207ENST00000537408 MT-ND3P03897 115 aa11.23□□□□□ -0.61
CLSTN3-207ENST00000537408 OCA2Q04671 838 aa11.23□□□□□ -0.61
CLSTN3-207ENST00000537408 SF3B4Q15427 424 aaKnown RBP eCLIP11.23□□□□□ -0.612e-6■■■■■ 28.8
CLSTN3-207ENST00000537408 NPY5RQ15761 445 aa11.23□□□□□ -0.61
CLSTN3-207ENST00000537408 ZFP1Q6P2D0 407 aa11.23□□□□□ -0.61
CLSTN3-207ENST00000537408 PRUNE1Q86TP1 453 aa11.23□□□□□ -0.61
CLSTN3-207ENST00000537408 ATP6V0D2Q8N8Y2 350 aa11.23□□□□□ -0.61
CLSTN3-207ENST00000537408 C12orf43Q96C57 262 aaKnown RBP11.23□□□□□ -0.61
CLSTN3-207ENST00000537408 POP1Q99575 1024 aaKnown RBP11.23□□□□□ -0.61
CLSTN3-207ENST00000537408 RIOK1Q9BRS2 568 aaKnown RBP11.23□□□□□ -0.61
CLSTN3-207ENST00000537408 WDR18Q9BV38 432 aa11.23□□□□□ -0.61
CLSTN3-207ENST00000537408 SNX25Q9H3E2 840 aa11.23□□□□□ -0.61
CLSTN3-207ENST00000537408 FAM237BA0A1B0GVD1 139 aa11.22□□□□□ -0.61
CLSTN3-207ENST00000537408 ARHGEF37A1IGU5 675 aa11.22□□□□□ -0.61
CLSTN3-207ENST00000537408 TYROBPO43914 113 aa11.22□□□□□ -0.61
CLSTN3-207ENST00000537408 MSCO60682 206 aa11.22□□□□□ -0.61
CLSTN3-207ENST00000537408 DDHD2O94830 711 aa11.22□□□□□ -0.61
CLSTN3-207ENST00000537408 H6PDO95479 791 aa11.22□□□□□ -0.61
CLSTN3-207ENST00000537408 CYP2C8P10632 490 aa11.22□□□□□ -0.61
CLSTN3-207ENST00000537408 GRK4P32298 578 aa11.22□□□□□ -0.61
CLSTN3-207ENST00000537408 SOX5P35711 763 aa11.22□□□□□ -0.61
CLSTN3-207ENST00000537408 ACADSBP45954 432 aa11.22□□□□□ -0.61
CLSTN3-207ENST00000537408 CCNIQ14094 377 aa11.22□□□□□ -0.61
CLSTN3-207ENST00000537408 ZBED5Q49AG3 693 aa11.22□□□□□ -0.61
CLSTN3-207ENST00000537408 ZNF618Q5T7W0 954 aa11.22□□□□□ -0.61
CLSTN3-207ENST00000537408 RNF180Q86T96 592 aa11.22□□□□□ -0.61
CLSTN3-207ENST00000537408 GPR180Q86V85 440 aa11.22□□□□□ -0.61
CLSTN3-207ENST00000537408 ELMOD1Q8N336 334 aa11.22□□□□□ -0.61
CLSTN3-207ENST00000537408 CCDC33Q8N5R6 958 aa11.22□□□□□ -0.61
CLSTN3-207ENST00000537408 TNIP2Q8NFZ5 429 aa11.22□□□□□ -0.61
CLSTN3-207ENST00000537408 CYP4F11Q9HBI6 524 aa11.22□□□□□ -0.61
CLSTN3-207ENST00000537408 ARHGEF4Q9NR80 690 aa11.22□□□□□ -0.61
CLSTN3-207ENST00000537408 PNPLA3Q9NST1 481 aa11.22□□□□□ -0.61
CLSTN3-207ENST00000537408 SAGE1Q9NXZ1 904 aa11.22□□□□□ -0.61
CLSTN3-207ENST00000537408 NCKIPSDQ9NZQ3 722 aa11.22□□□□□ -0.61
CLSTN3-207ENST00000537408 GCNT4Q9P109 453 aa11.22□□□□□ -0.61
CLSTN3-207ENST00000537408 AREL1O15033 823 aa11.22□□□□□ -0.61
CLSTN3-207ENST00000537408 SULT1C4O75897 302 aa11.22□□□□□ -0.61
CLSTN3-207ENST00000537408 DLDP09622 509 aaKnown RBP11.22□□□□□ -0.61
CLSTN3-207ENST00000537408 COMTP21964 271 aa11.22□□□□□ -0.61
CLSTN3-207ENST00000537408 PON1P27169 355 aa11.22□□□□□ -0.61
CLSTN3-207ENST00000537408 SLC1A1P43005 524 aa11.22□□□□□ -0.61
CLSTN3-207ENST00000537408 ALDH3B2P48448 385 aa11.22□□□□□ -0.61
CLSTN3-207ENST00000537408 PRR16Q569H4 304 aa11.22□□□□□ -0.61
CLSTN3-207ENST00000537408 C6orf52Q5T4I8 152 aa11.22□□□□□ -0.61
CLSTN3-207ENST00000537408 TUBA3EQ6PEY2 450 aa11.22□□□□□ -0.61
CLSTN3-207ENST00000537408 SLAIN1Q8ND83 568 aa11.22□□□□□ -0.61
CLSTN3-207ENST00000537408 HM13Q8TCT9 377 aa11.22□□□□□ -0.61
CLSTN3-207ENST00000537408 PSPC1Q8WXF1 523 aaKnown RBP11.22□□□□□ -0.61
CLSTN3-207ENST00000537408 KRT35Q92764 455 aa11.22□□□□□ -0.61
CLSTN3-207ENST00000537408 DNAJC18Q9H819 358 aa11.22□□□□□ -0.61
CLSTN3-207ENST00000537408 RAVER2Q9HCJ3 691 aaKnown RBP11.22□□□□□ -0.61
CLSTN3-207ENST00000537408 CNTNAP5Q8WYK1 1306 aa11.22□□□□□ -0.61
CLSTN3-207ENST00000537408 ALOX15BO15296 676 aa11.22□□□□□ -0.61
CLSTN3-207ENST00000537408 FAM13AO94988 1023 aa11.22□□□□□ -0.61
CLSTN3-207ENST00000537408 FYNP06241 537 aa11.22□□□□□ -0.61
CLSTN3-207ENST00000537408 NR2F2P24468 414 aa11.22□□□□□ -0.61
CLSTN3-207ENST00000537408 SLC25A3Q00325 362 aa11.22□□□□□ -0.61
CLSTN3-207ENST00000537408 FRMD5Q7Z6J6 570 aa11.22□□□□□ -0.61
CLSTN3-207ENST00000537408 RELL1Q8IUW5 271 aa11.22□□□□□ -0.61
CLSTN3-207ENST00000537408 ACTRT2Q8TDY3 377 aa11.22□□□□□ -0.61
CLSTN3-207ENST00000537408 THAP2Q9H0W7 228 aa11.22□□□□□ -0.61
CLSTN3-207ENST00000537408 SIAEQ9HAT2 523 aa11.22□□□□□ -0.61
CLSTN3-207ENST00000537408 IFT122Q9HBG6 1241 aa11.22□□□□□ -0.61
CLSTN3-207ENST00000537408 APOBEC2Q9Y235 224 aaKnown RBP11.22□□□□□ -0.61
CLSTN3-207ENST00000537408 MYOCOSA0A1B0GUC4 107 aa11.21□□□□□ -0.61
CLSTN3-207ENST00000537408 SFI1A8K8P3 1242 aa11.21□□□□□ -0.61
CLSTN3-207ENST00000537408 PSMD11O00231 422 aa11.21□□□□□ -0.61
CLSTN3-207ENST00000537408 KRT3P12035 628 aa11.21□□□□□ -0.61
CLSTN3-207ENST00000537408 MAP4P27816 1152 aaKnown RBP11.21□□□□□ -0.61
CLSTN3-207ENST00000537408 FUT2Q10981 343 aa11.21□□□□□ -0.61
CLSTN3-207ENST00000537408 PDIA2Q13087 525 aaKnown RBP11.21□□□□□ -0.61
CLSTN3-207ENST00000537408 ADGRA1Q86SQ6 560 aa11.21□□□□□ -0.61
CLSTN3-207ENST00000537408 SIX6OS1Q8N1H7 587 aa11.21□□□□□ -0.61
CLSTN3-207ENST00000537408 ESX1Q8N693 406 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms