RNA–Protein interactions for RNA: ENST00000534705.5

USP48-215, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 566 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-215ENST00000534705 XAGE5Q8WWM1 108 aa4.16□□□□□ -1.74
USP48-215ENST00000534705 ZDHHC12Q96GR4 267 aa4.16□□□□□ -1.74
USP48-215ENST00000534705 CCDC136Q96JN2 1154 aa4.16□□□□□ -1.74
USP48-215ENST00000534705 SNX22Q96L94 193 aa4.16□□□□□ -1.74
USP48-215ENST00000534705 COLEC11Q9BWP8 271 aa4.16□□□□□ -1.74
USP48-215ENST00000534705 STK31Q9BXU1 1019 aa4.16□□□□□ -1.74
USP48-215ENST00000534705 GBA2Q9HCG7 927 aaPredicted RBP4.16□□□□□ -1.74
USP48-215ENST00000534705 MID2Q9UJV3 735 aa4.16□□□□□ -1.74
USP48-215ENST00000534705 HDAC9Q9UKV0 1011 aa4.16□□□□□ -1.74
USP48-215ENST00000534705 PCDHGB6Q9Y5F9 930 aa4.16□□□□□ -1.74
USP48-215ENST00000534705 ROBO1Q9Y6N7 1651 aa4.16□□□□□ -1.74
USP48-215ENST00000534705 FNDC1Q4ZHG4 1894 aaPredicted RBP4.15□□□□□ -1.74
USP48-215ENST00000534705 SETD5Q9C0A6 1442 aa4.15□□□□□ -1.74
USP48-215ENST00000534705 LAMC1P11047 1609 aa4.15□□□□□ -1.74
USP48-215ENST00000534705 CLCA1A8K7I4 914 aa4.15□□□□□ -1.75
USP48-215ENST00000534705 H7C4K7 107 aa4.15□□□□□ -1.75
USP48-215ENST00000534705 PSMD9O00233 223 aa4.15□□□□□ -1.75
USP48-215ENST00000534705 PIAS2O75928 621 aa4.15□□□□□ -1.75
USP48-215ENST00000534705 IL18RAPO95256 599 aa4.15□□□□□ -1.75
USP48-215ENST00000534705 RASAL1O95294 804 aa4.15□□□□□ -1.75
USP48-215ENST00000534705 A1BGP04217 495 aa4.15□□□□□ -1.75
USP48-215ENST00000534705 MYCLP12524 364 aaPredicted RBP4.15□□□□□ -1.75
USP48-215ENST00000534705 ENGP17813 658 aa4.15□□□□□ -1.75
USP48-215ENST00000534705 GKP32189 559 aa4.15□□□□□ -1.75
USP48-215ENST00000534705 MTHFSP49914 203 aa4.15□□□□□ -1.75
USP48-215ENST00000534705 TIRAPP58753 221 aa4.15□□□□□ -1.75
USP48-215ENST00000534705 SUMO2P61956 95 aaKnown RBP4.15□□□□□ -1.75
USP48-215ENST00000534705 TUBA4AP68366 448 aa4.15□□□□□ -1.75
USP48-215ENST00000534705 HSP90AB2PQ58FF8 381 aa4.15□□□□□ -1.75
USP48-215ENST00000534705 CCDC181Q5TID7 509 aa4.15□□□□□ -1.75
USP48-215ENST00000534705 CACHD1Q5VU97 1274 aa4.15□□□□□ -1.75
USP48-215ENST00000534705 TRIM72Q6ZMU5 477 aa4.15□□□□□ -1.75
USP48-215ENST00000534705 UNC13DQ70J99 1090 aa4.15□□□□□ -1.75
USP48-215ENST00000534705 CERS3Q8IU89 383 aa4.15□□□□□ -1.75
USP48-215ENST00000534705 SFTPA1Q8IWL2 248 aa4.15□□□□□ -1.75
USP48-215ENST00000534705 TMEM171Q8WVE6 324 aa4.15□□□□□ -1.75
USP48-215ENST00000534705 RPL36ALQ969Q0 106 aaKnown RBP4.15□□□□□ -1.75
USP48-215ENST00000534705 PSMD1Q99460 953 aa4.15□□□□□ -1.75
USP48-215ENST00000534705 WACQ9BTA9 647 aa4.15□□□□□ -1.75
USP48-215ENST00000534705 SEMA4CQ9C0C4 833 aa4.15□□□□□ -1.75
USP48-215ENST00000534705 SLC52A1Q9NWF4 448 aa4.15□□□□□ -1.75
USP48-215ENST00000534705 ZNF212Q9UDV6 495 aa4.15□□□□□ -1.75
USP48-215ENST00000534705 USP22Q9UPT9 525 aa4.15□□□□□ -1.75
USP48-215ENST00000534705 DRG1Q9Y295 367 aaKnown RBP4.15□□□□□ -1.75
USP48-215ENST00000534705 ASXL1Q8IXJ9 1541 aa4.15□□□□□ -1.75
USP48-215ENST00000534705 ARHGEF28Q8N1W1 1705 aaKnown RBP4.15□□□□□ -1.75
USP48-215ENST00000534705 KIAA1210Q9ULL0 1709 aa4.15□□□□□ -1.75
USP48-215ENST00000534705 PLEKHG1Q9ULL1 1385 aa4.14□□□□□ -1.75
USP48-215ENST00000534705 NHSL1Q5SYE7 1610 aa4.14□□□□□ -1.75
USP48-215ENST00000534705 SPATA31E1Q6ZUB1 1445 aa4.14□□□□□ -1.75
USP48-215ENST00000534705 PTPRUQ92729 1446 aa4.14□□□□□ -1.75
USP48-215ENST00000534705 NKTRP30414 1462 aaKnown RBP4.14□□□□□ -1.75
USP48-215ENST00000534705 ANO9A1A5B4 782 aa4.14□□□□□ -1.75
USP48-215ENST00000534705 RHPN2P1A8MT19 583 aa4.14□□□□□ -1.75
USP48-215ENST00000534705 TP73O15350 636 aa4.14□□□□□ -1.75
USP48-215ENST00000534705 THAP12O43422 761 aa4.14□□□□□ -1.75
USP48-215ENST00000534705 PQBP1O60828 265 aaKnown RBP4.14□□□□□ -1.75
USP48-215ENST00000534705 LATS1O95835 1130 aa4.14□□□□□ -1.75
USP48-215ENST00000534705 SLC5A1P13866 664 aa4.14□□□□□ -1.75
USP48-215ENST00000534705 TPH1P17752 444 aa4.14□□□□□ -1.75
USP48-215ENST00000534705 BTF3P20290 206 aaKnown RBP4.14□□□□□ -1.75
USP48-215ENST00000534705 TKTP29401 623 aaKnown RBP4.14□□□□□ -1.75
USP48-215ENST00000534705 FOXG1P55316 489 aaPredicted RBP4.14□□□□□ -1.75
USP48-215ENST00000534705 CYP4F2P78329 520 aa4.14□□□□□ -1.75
USP48-215ENST00000534705 HOXA4Q00056 320 aaPredicted RBP4.14□□□□□ -1.75
USP48-215ENST00000534705 TFF2Q03403 129 aa4.14□□□□□ -1.75
USP48-215ENST00000534705 CLCA4Q14CN2 919 aa4.14□□□□□ -1.75
USP48-215ENST00000534705 LY6KQ17RY6 165 aa4.14□□□□□ -1.75
USP48-215ENST00000534705 PROSER3Q2NL68 480 aa4.14□□□□□ -1.75
USP48-215ENST00000534705 DENND2CQ68D51 928 aa4.14□□□□□ -1.75
USP48-215ENST00000534705 PLAG1Q6DJT9 500 aa4.14□□□□□ -1.75
USP48-215ENST00000534705 KIRREL2Q6UWL6 708 aa4.14□□□□□ -1.75
USP48-215ENST00000534705 SIRT6Q8N6T7 355 aa4.14□□□□□ -1.75
USP48-215ENST00000534705 VGLL2Q8N8G2 317 aa4.14□□□□□ -1.75
USP48-215ENST00000534705 IQCDQ96DY2 449 aa4.14□□□□□ -1.75
USP48-215ENST00000534705 DAZAP1Q96EP5 407 aaKnown RBP4.14□□□□□ -1.75
USP48-215ENST00000534705 LENG8Q96PV6 779 aaPredicted RBP4.14□□□□□ -1.75
USP48-215ENST00000534705 SNX18Q96RF0 628 aa4.14□□□□□ -1.75
USP48-215ENST00000534705 PRR25Q96S07 402 aa4.14□□□□□ -1.75
USP48-215ENST00000534705 DPCDQ9BVM2 203 aaPredicted RBP4.14□□□□□ -1.75
USP48-215ENST00000534705 SNX13Q9Y5W8 968 aa4.14□□□□□ -1.75
USP48-215ENST00000534705 PHLPP1O60346 1717 aa4.14□□□□□ -1.75
USP48-215ENST00000534705 MARF1Q9Y4F3 1742 aaKnown RBP4.14□□□□□ -1.75
USP48-215ENST00000534705 ZNF521Q96K83 1311 aa4.14□□□□□ -1.75
USP48-215ENST00000534705 RAB3GAP2Q9H2M9 1393 aa4.14□□□□□ -1.75
USP48-215ENST00000534705 FMN2Q9NZ56 1722 aa4.13□□□□□ -1.75
USP48-215ENST00000534705 A8MVJ9 347 aa4.13□□□□□ -1.75
USP48-215ENST00000534705 F8W8V4 182 aa4.13□□□□□ -1.75
USP48-215ENST00000534705 RAB27BO00194 218 aa4.13□□□□□ -1.75
USP48-215ENST00000534705 RGS10O43665 173 aa4.13□□□□□ -1.75
USP48-215ENST00000534705 PMPCBO75439 489 aa4.13□□□□□ -1.75
USP48-215ENST00000534705 CHRM5P08912 532 aaPredicted RBP4.13□□□□□ -1.75
USP48-215ENST00000534705 PARP1P09874 1014 aaKnown RBP4.13□□□□□ -1.75
USP48-215ENST00000534705 TSHRP16473 764 aa4.13□□□□□ -1.75
USP48-215ENST00000534705 GNALP38405 381 aa4.13□□□□□ -1.75
USP48-215ENST00000534705 CASP5P51878 434 aa4.13□□□□□ -1.75
USP48-215ENST00000534705 PGDP52209 483 aa4.13□□□□□ -1.75
USP48-215ENST00000534705 E2F1Q01094 437 aa4.13□□□□□ -1.75
USP48-215ENST00000534705 ZNF543Q08ER8 600 aa4.13□□□□□ -1.75
USP48-215ENST00000534705 GRM1Q13255 1194 aa4.13□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms