RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 LRRC4Q9HBW1 653 aa11.16□□□□□ -0.62
CD44-227ENST00000528086 CNGB3Q9NQW8 809 aa11.16□□□□□ -0.62
CD44-227ENST00000528086 ARHGEF4Q9NR80 690 aa11.16□□□□□ -0.62
CD44-227ENST00000528086 TMEM63CQ9P1W3 806 aa11.16□□□□□ -0.62
CD44-227ENST00000528086 APEX2Q9UBZ4 518 aa11.16□□□□□ -0.62
CD44-227ENST00000528086 CKAP5Q14008 2032 aa11.16□□□□□ -0.62
CD44-227ENST00000528086 THADAQ6YHU6 1953 aa11.16□□□□□ -0.62
CD44-227ENST00000528086 CEP192Q8TEP8 1941 aa11.15□□□□□ -0.62
CD44-227ENST00000528086 A0A1W2PQF6 199 aa11.15□□□□□ -0.62
CD44-227ENST00000528086 EPHB6O15197 1021 aa11.15□□□□□ -0.62
CD44-227ENST00000528086 LETM1O95202 739 aaPredicted RBP11.15□□□□□ -0.62
CD44-227ENST00000528086 FGFR1OPO95684 399 aaKnown RBP11.15□□□□□ -0.62
CD44-227ENST00000528086 RALAP11233 206 aa11.15□□□□□ -0.62
CD44-227ENST00000528086 KRT5P13647 590 aa11.15□□□□□ -0.62
CD44-227ENST00000528086 TIE1P35590 1138 aa11.15□□□□□ -0.62
CD44-227ENST00000528086 GRIA2P42262 883 aa11.15□□□□□ -0.62
CD44-227ENST00000528086 MTIF2P46199 727 aaKnown RBP11.15□□□□□ -0.62
CD44-227ENST00000528086 KLK7P49862 253 aa11.15□□□□□ -0.62
CD44-227ENST00000528086 EIF4EBP2Q13542 120 aaPredicted RBP11.15□□□□□ -0.62
CD44-227ENST00000528086 ANO4Q32M45 955 aa11.15□□□□□ -0.62
CD44-227ENST00000528086 TCP11X2Q5H9J9 407 aa11.15□□□□□ -0.62
CD44-227ENST00000528086 SYPL2Q5VXT5 272 aa11.15□□□□□ -0.62
CD44-227ENST00000528086 EGFLAMQ63HQ2 1017 aa11.15□□□□□ -0.62
CD44-227ENST00000528086 TMEM215Q68D42 235 aa11.15□□□□□ -0.62
CD44-227ENST00000528086 RNF43Q68DV7 783 aa11.15□□□□□ -0.62
CD44-227ENST00000528086 TMEM110Q86TL2 294 aa11.15□□□□□ -0.62
CD44-227ENST00000528086 KBTBD6Q86V97 674 aa11.15□□□□□ -0.62
CD44-227ENST00000528086 RASSF3Q86WH2 238 aa11.15□□□□□ -0.62
CD44-227ENST00000528086 DENND1CQ8IV53 801 aa11.15□□□□□ -0.62
CD44-227ENST00000528086 SCUBE3Q8IX30 993 aa11.15□□□□□ -0.62
CD44-227ENST00000528086 FRMD1Q8N878 549 aa11.15□□□□□ -0.62
CD44-227ENST00000528086 TERB1Q8NA31 727 aa11.15□□□□□ -0.62
CD44-227ENST00000528086 TXNDC5Q8NBS9 432 aaKnown RBP11.15□□□□□ -0.62
CD44-227ENST00000528086 ENOX1Q8TC92 643 aaKnown RBP11.15□□□□□ -0.62
CD44-227ENST00000528086 RUBCNQ92622 972 aa11.15□□□□□ -0.62
CD44-227ENST00000528086 BHMTQ93088 406 aa11.15□□□□□ -0.62
CD44-227ENST00000528086 HSFY1Q96LI6 401 aa11.15□□□□□ -0.62
CD44-227ENST00000528086 TUBGCP2Q9BSJ2 902 aa11.15□□□□□ -0.62
CD44-227ENST00000528086 BBS2Q9BXC9 721 aa11.15□□□□□ -0.62
CD44-227ENST00000528086 NACA2Q9H009 215 aa11.15□□□□□ -0.62
CD44-227ENST00000528086 HESX1Q9UBX0 185 aa11.15□□□□□ -0.62
CD44-227ENST00000528086 STOML2Q9UJZ1 356 aa11.15□□□□□ -0.62
CD44-227ENST00000528086 DNAJC12Q9UKB3 198 aa11.15□□□□□ -0.62
CD44-227ENST00000528086 MMP17Q9ULZ9 603 aa11.15□□□□□ -0.62
CD44-227ENST00000528086 NFE2L3Q9Y4A8 694 aa11.15□□□□□ -0.62
CD44-227ENST00000528086 FHOD1Q9Y613 1164 aa11.15□□□□□ -0.62
CD44-227ENST00000528086 CACNA1AO00555 2505 aa11.14□□□□□ -0.63
CD44-227ENST00000528086 CCDC163A0A0D9SF12 145 aa11.14□□□□□ -0.63
CD44-227ENST00000528086 KCNJ18B7U540 433 aa11.14□□□□□ -0.63
CD44-227ENST00000528086 E5RJQ4 531 aa11.14□□□□□ -0.63
CD44-227ENST00000528086 NEDD8-MDP1E9PL57 170 aa11.14□□□□□ -0.63
CD44-227ENST00000528086 KLF8O95600 359 aaPredicted RBP11.14□□□□□ -0.63
CD44-227ENST00000528086 IGLV3-25P01717 112 aa11.14□□□□□ -0.63
CD44-227ENST00000528086 TRIM21P19474 475 aaKnown RBP11.14□□□□□ -0.63
CD44-227ENST00000528086 SLC6A4P31645 630 aa11.14□□□□□ -0.63
CD44-227ENST00000528086 TNFRSF4P43489 277 aa11.14□□□□□ -0.63
CD44-227ENST00000528086 NRLP54845 237 aa11.14□□□□□ -0.63
CD44-227ENST00000528086 MRPS21P82921 87 aaKnown RBP11.14□□□□□ -0.63
CD44-227ENST00000528086 COG7P83436 770 aa11.14□□□□□ -0.63
CD44-227ENST00000528086 CETN1Q12798 172 aa11.14□□□□□ -0.63
CD44-227ENST00000528086 KCNJ12Q14500 433 aa11.14□□□□□ -0.63
CD44-227ENST00000528086 STILQ15468 1287 aa11.14□□□□□ -0.63
CD44-227ENST00000528086 CRY1Q16526 586 aa11.14□□□□□ -0.63
CD44-227ENST00000528086 GEN1Q17RS7 908 aa11.14□□□□□ -0.63
CD44-227ENST00000528086 FAM133BQ5BKY9 247 aaKnown RBP11.14□□□□□ -0.63
CD44-227ENST00000528086 ARTNQ5T4W7 220 aa11.14□□□□□ -0.63
CD44-227ENST00000528086 KLHDC7AQ5VTJ3 777 aa11.14□□□□□ -0.63
CD44-227ENST00000528086 NADSYN1Q6IA69 706 aa11.14□□□□□ -0.63
CD44-227ENST00000528086 ENOSF1Q7L5Y1 443 aa11.14□□□□□ -0.63
CD44-227ENST00000528086 SLC47A2Q86VL8 602 aa11.14□□□□□ -0.63
CD44-227ENST00000528086 KIAA2013Q8IYS2 634 aa11.14□□□□□ -0.63
CD44-227ENST00000528086 FAM71AQ8IYT1 594 aa11.14□□□□□ -0.63
CD44-227ENST00000528086 ARHGAP18Q8N392 663 aa11.14□□□□□ -0.63
CD44-227ENST00000528086 FAM160A2Q8N612 972 aaPredicted RBP11.14□□□□□ -0.63
CD44-227ENST00000528086 MDGA1Q8NFP4 955 aa11.14□□□□□ -0.63
CD44-227ENST00000528086 WFDC5Q8TCV5 224 aa11.14□□□□□ -0.63
CD44-227ENST00000528086 GAB3Q8WWW8 586 aa11.14□□□□□ -0.63
CD44-227ENST00000528086 IRGQQ8WZA9 623 aa11.14□□□□□ -0.63
CD44-227ENST00000528086 DDX1Q92499 740 aaKnown RBP11.14□□□□□ -0.63
CD44-227ENST00000528086 SLC39A13Q96H72 371 aa11.14□□□□□ -0.63
CD44-227ENST00000528086 LMLNQ96KR4 655 aa11.14□□□□□ -0.63
CD44-227ENST00000528086 FCRL2Q96LA5 508 aaPredicted RBP11.14□□□□□ -0.63
CD44-227ENST00000528086 CPXM1Q96SM3 734 aa11.14□□□□□ -0.63
CD44-227ENST00000528086 MIS12Q9H081 205 aa11.14□□□□□ -0.63
CD44-227ENST00000528086 GANQ9H2C0 597 aa11.14□□□□□ -0.63
CD44-227ENST00000528086 DNAJC17Q9NVM6 304 aaKnown RBP11.14□□□□□ -0.63
CD44-227ENST00000528086 TAB2Q9NYJ8 693 aa11.14□□□□□ -0.63
CD44-227ENST00000528086 EBF1Q9UH73 591 aa11.14□□□□□ -0.63
CD44-227ENST00000528086 XPO7Q9UIA9 1087 aaKnown RBP11.14□□□□□ -0.63
CD44-227ENST00000528086 NAALADL1Q9UQQ1 740 aa11.14□□□□□ -0.63
CD44-227ENST00000528086 INVSQ9Y283 1065 aa11.14□□□□□ -0.63
CD44-227ENST00000528086 STARD13Q9Y3M8 1113 aa11.14□□□□□ -0.63
CD44-227ENST00000528086 GOLGA6L7A0A1B0GV03 622 aa11.13□□□□□ -0.63
CD44-227ENST00000528086 WASH3PC4AMC7 463 aa11.13□□□□□ -0.63
CD44-227ENST00000528086 ATG13O75143 517 aa11.13□□□□□ -0.63
CD44-227ENST00000528086 LTFP02788 710 aa11.13□□□□□ -0.63
CD44-227ENST00000528086 APODP05090 189 aa11.13□□□□□ -0.63
CD44-227ENST00000528086 ZNF18P17022 549 aa11.13□□□□□ -0.63
CD44-227ENST00000528086 BCKDHBP21953 392 aa11.13□□□□□ -0.63
CD44-227ENST00000528086 HOXD9P28356 352 aaPredicted RBP11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms