RNA–Protein interactions for RNA: ENST00000513643.5

RNF4-221, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-221ENST00000513643 DCLK3Q9C098 648 aa10.16□□□□□ -0.78
RNF4-221ENST00000513643 VPS16Q9H269 839 aa10.16□□□□□ -0.78
RNF4-221ENST00000513643 SEMA4AQ9H3S1 761 aa10.16□□□□□ -0.78
RNF4-221ENST00000513643 FAM86C1Q9NVL1 165 aa10.16□□□□□ -0.78
RNF4-221ENST00000513643 ZSCAN32Q9NX65 697 aa10.16□□□□□ -0.78
RNF4-221ENST00000513643 AGO1Q9UL18 857 aaKnown RBP10.16□□□□□ -0.78
RNF4-221ENST00000513643 ZNF510Q9Y2H8 683 aa10.16□□□□□ -0.78
RNF4-221ENST00000513643 STARD13Q9Y3M8 1113 aa10.16□□□□□ -0.78
RNF4-221ENST00000513643 HBS1LQ9Y450 684 aaKnown RBP10.16□□□□□ -0.78
RNF4-221ENST00000513643 PCDHGA2Q9Y5H1 932 aa10.16□□□□□ -0.78
RNF4-221ENST00000513643 DMXL1Q9Y485 3027 aa10.15□□□□□ -0.78
RNF4-221ENST00000513643 CCDC163A0A0D9SF12 145 aa10.15□□□□□ -0.78
RNF4-221ENST00000513643 E5RJQ4 531 aa10.15□□□□□ -0.78
RNF4-221ENST00000513643 SART1O43290 800 aaKnown RBP10.15□□□□□ -0.78
RNF4-221ENST00000513643 THAP12O43422 761 aa10.15□□□□□ -0.78
RNF4-221ENST00000513643 TULP3O75386 442 aa10.15□□□□□ -0.78
RNF4-221ENST00000513643 LATS1O95835 1130 aa10.15□□□□□ -0.78
RNF4-221ENST00000513643 LTFP02788 710 aa10.15□□□□□ -0.78
RNF4-221ENST00000513643 ATP1A3P13637 1013 aa10.15□□□□□ -0.78
RNF4-221ENST00000513643 CYP11B1P15538 503 aa10.15□□□□□ -0.78
RNF4-221ENST00000513643 HOXC13P31276 330 aa10.15□□□□□ -0.78
RNF4-221ENST00000513643 GRIA2P42262 883 aa10.15□□□□□ -0.78
RNF4-221ENST00000513643 TNFRSF4P43489 277 aa10.15□□□□□ -0.78
RNF4-221ENST00000513643 GABRB2P47870 512 aa10.15□□□□□ -0.78
RNF4-221ENST00000513643 CSTF1Q05048 431 aaKnown RBP10.15□□□□□ -0.78
RNF4-221ENST00000513643 RING1Q06587 406 aa10.15□□□□□ -0.78
RNF4-221ENST00000513643 GOLGA8FQ08AF8 430 aa10.15□□□□□ -0.78
RNF4-221ENST00000513643 GOLGA8DPQ0D2H9 430 aa10.15□□□□□ -0.78
RNF4-221ENST00000513643 NNTQ13423 1086 aa10.15□□□□□ -0.78
RNF4-221ENST00000513643 FYB2Q5VWT5 728 aa10.15□□□□□ -0.78
RNF4-221ENST00000513643 SYT13Q7L8C5 426 aa10.15□□□□□ -0.78
RNF4-221ENST00000513643 MIB1Q86YT6 1006 aa10.15□□□□□ -0.78
RNF4-221ENST00000513643 SFTPA1Q8IWL2 248 aa10.15□□□□□ -0.78
RNF4-221ENST00000513643 SUMF1Q8NBK3 374 aa10.15□□□□□ -0.78
RNF4-221ENST00000513643 KCNV2Q8TDN2 545 aa10.15□□□□□ -0.78
RNF4-221ENST00000513643 USP33Q8TEY7 942 aa10.15□□□□□ -0.78
RNF4-221ENST00000513643 EDEM1Q92611 657 aa10.15□□□□□ -0.78
RNF4-221ENST00000513643 EXOC4Q96A65 974 aa10.15□□□□□ -0.78
RNF4-221ENST00000513643 PLD4Q96BZ4 506 aa10.15□□□□□ -0.78
RNF4-221ENST00000513643 SLC2A13Q96QE2 648 aa10.15□□□□□ -0.78
RNF4-221ENST00000513643 PNKPQ96T60 521 aa10.15□□□□□ -0.78
RNF4-221ENST00000513643 LSM14BQ9BX40 385 aaKnown RBP10.15□□□□□ -0.78
RNF4-221ENST00000513643 IRX2Q9BZI1 471 aaPredicted RBP10.15□□□□□ -0.78
RNF4-221ENST00000513643 NACA2Q9H009 215 aa10.15□□□□□ -0.78
RNF4-221ENST00000513643 RTN4Q9NQC3 1192 aaKnown RBP10.15□□□□□ -0.78
RNF4-221ENST00000513643 ASNSD1Q9NWL6 643 aa10.15□□□□□ -0.78
RNF4-221ENST00000513643 WDR35Q9P2L0 1181 aa10.15□□□□□ -0.78
RNF4-221ENST00000513643 TJP2Q9UDY2 1190 aa10.15□□□□□ -0.78
RNF4-221ENST00000513643 SFMBT1Q9UHJ3 866 aa10.15□□□□□ -0.78
RNF4-221ENST00000513643 NOCTQ9UK39 431 aaKnown RBP10.15□□□□□ -0.78
RNF4-221ENST00000513643 SLC27A6Q9Y2P4 619 aa10.15□□□□□ -0.78
RNF4-221ENST00000513643 SLC12A8A0AV02 714 aa10.14□□□□□ -0.79
RNF4-221ENST00000513643 PALM2-AKAP2B1ALY0 433 aaPredicted RBP10.14□□□□□ -0.79
RNF4-221ENST00000513643 ATG13O75143 517 aa10.14□□□□□ -0.79
RNF4-221ENST00000513643 RNF40O75150 1001 aa10.14□□□□□ -0.79
RNF4-221ENST00000513643 KAT7O95251 611 aa10.14□□□□□ -0.79
RNF4-221ENST00000513643 GLI1P08151 1106 aa10.14□□□□□ -0.79
RNF4-221ENST00000513643 IRF1P10914 325 aa10.14□□□□□ -0.79
RNF4-221ENST00000513643 CHRNB2P17787 502 aa10.14□□□□□ -0.79
RNF4-221ENST00000513643 CORO1AP31146 461 aaKnown RBP10.14□□□□□ -0.79
RNF4-221ENST00000513643 CHKAP35790 457 aa10.14□□□□□ -0.79
RNF4-221ENST00000513643 MRE11P49959 708 aa10.14□□□□□ -0.79
RNF4-221ENST00000513643 MRPS21P82921 87 aaKnown RBP10.14□□□□□ -0.79
RNF4-221ENST00000513643 TAF5Q15542 800 aa10.14□□□□□ -0.79
RNF4-221ENST00000513643 PTPN20Q4JDL3 420 aa10.14□□□□□ -0.79
RNF4-221ENST00000513643 SYPL2Q5VXT5 272 aa10.14□□□□□ -0.79
RNF4-221ENST00000513643 TSSK4Q6SA08 328 aa10.14□□□□□ -0.79
RNF4-221ENST00000513643 OLFML1Q6UWY5 402 aa10.14□□□□□ -0.79
RNF4-221ENST00000513643 ASCL5Q7RTU5 278 aa10.14□□□□□ -0.79
RNF4-221ENST00000513643 NOP9Q86U38 636 aaKnown RBP10.14□□□□□ -0.79
RNF4-221ENST00000513643 FMNL3Q8IVF7 1028 aa10.14□□□□□ -0.79
RNF4-221ENST00000513643 AOPEPQ8N6M6 819 aa10.14□□□□□ -0.79
RNF4-221ENST00000513643 TTC16Q8NEE8 873 aa10.14□□□□□ -0.79
RNF4-221ENST00000513643 ZNF397Q8NF99 534 aaPredicted RBP10.14□□□□□ -0.79
RNF4-221ENST00000513643 CCDC26Q8TAB7 109 aa10.14□□□□□ -0.79
RNF4-221ENST00000513643 EPS8L1Q8TE68 723 aa10.14□□□□□ -0.79
RNF4-221ENST00000513643 DQX1Q8TE96 717 aaKnown RBP10.14□□□□□ -0.79
RNF4-221ENST00000513643 PIWIL1Q96J94 861 aaKnown RBP10.14□□□□□ -0.79
RNF4-221ENST00000513643 PPP1R13BQ96KQ4 1090 aa10.14□□□□□ -0.79
RNF4-221ENST00000513643 FCRL2Q96LA5 508 aaPredicted RBP10.14□□□□□ -0.79
RNF4-221ENST00000513643 MIS12Q9H081 205 aa10.14□□□□□ -0.79
RNF4-221ENST00000513643 NAT10Q9H0A0 1025 aaKnown RBP10.14□□□□□ -0.79
RNF4-221ENST00000513643 CD248Q9HCU0 757 aa10.14□□□□□ -0.79
RNF4-221ENST00000513643 RASAL2Q9UJF2 1139 aa10.14□□□□□ -0.79
RNF4-221ENST00000513643 LSM7Q9UK45 103 aaKnown RBP10.14□□□□□ -0.79
RNF4-221ENST00000513643 STRIP2Q9ULQ0 834 aa10.14□□□□□ -0.79
RNF4-221ENST00000513643 NAALADL1Q9UQQ1 740 aa10.14□□□□□ -0.79
RNF4-221ENST00000513643 DCHS1Q96JQ0 3298 aa10.14□□□□□ -0.79
RNF4-221ENST00000513643 MYO18AQ92614 2054 aaKnown RBP10.13□□□□□ -0.79
RNF4-221ENST00000513643 MYO16Q9Y6X6 1858 aa10.13□□□□□ -0.79
RNF4-221ENST00000513643 SPTBN4Q9H254 2564 aa10.13□□□□□ -0.79
RNF4-221ENST00000513643 PRR23AA6NEV1 266 aa10.13□□□□□ -0.79
RNF4-221ENST00000513643 SMTNL1A8MU46 457 aa10.13□□□□□ -0.79
RNF4-221ENST00000513643 PIK3R2O00459 728 aa10.13□□□□□ -0.79
RNF4-221ENST00000513643 TRIM24O15164 1050 aa10.13□□□□□ -0.79
RNF4-221ENST00000513643 TEX33O43247 280 aa10.13□□□□□ -0.79
RNF4-221ENST00000513643 ERBB2P04626 1255 aa10.13□□□□□ -0.79
RNF4-221ENST00000513643 CYP1A1P04798 512 aaPredicted RBP10.13□□□□□ -0.79
RNF4-221ENST00000513643 C7P10643 843 aa10.13□□□□□ -0.79
RNF4-221ENST00000513643 TYRP14679 529 aa10.13□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 122.3 ms