RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 C19orf53Q9UNZ5 99 aaPredicted RBP4.65□□□□□ -1.67
HMGB1P28-201ENST00000507778 CNTN6Q9UQ52 1028 aa4.65□□□□□ -1.67
HMGB1P28-201ENST00000507778 KIF28PB7ZC32 967 aa4.64□□□□□ -1.67
HMGB1P28-201ENST00000507778 H0Y3Z8 333 aa4.64□□□□□ -1.67
HMGB1P28-201ENST00000507778 H0YIZ8 118 aa4.64□□□□□ -1.67
HMGB1P28-201ENST00000507778 CA12O43570 354 aa4.64□□□□□ -1.67
HMGB1P28-201ENST00000507778 LARGE1O95461 756 aa4.64□□□□□ -1.67
HMGB1P28-201ENST00000507778 ELFN1P0C7U0 828 aa4.64□□□□□ -1.67
HMGB1P28-201ENST00000507778 AARSP49588 968 aaKnown RBP eCLIP4.64□□□□□ -1.67
HMGB1P28-201ENST00000507778 DIO1P49895 249 aa4.64□□□□□ -1.67
HMGB1P28-201ENST00000507778 CDK7P50613 346 aa4.64□□□□□ -1.67
HMGB1P28-201ENST00000507778 DNASE1L3Q13609 305 aa4.64□□□□□ -1.67
HMGB1P28-201ENST00000507778 CUL4BQ13620 913 aa4.64□□□□□ -1.67
HMGB1P28-201ENST00000507778 TAF12Q16514 161 aa4.64□□□□□ -1.67
HMGB1P28-201ENST00000507778 AARS2Q5JTZ9 985 aaKnown RBP4.64□□□□□ -1.67
HMGB1P28-201ENST00000507778 FBXO47Q5MNV8 452 aa4.64□□□□□ -1.67
HMGB1P28-201ENST00000507778 LAIR1Q6GTX8 287 aa4.64□□□□□ -1.67
HMGB1P28-201ENST00000507778 CYP26C1Q6V0L0 522 aa4.64□□□□□ -1.67
HMGB1P28-201ENST00000507778 SFTPA1Q8IWL2 248 aa4.64□□□□□ -1.67
HMGB1P28-201ENST00000507778 PNPLA1Q8N8W4 532 aa4.64□□□□□ -1.67
HMGB1P28-201ENST00000507778 FAM71DQ8N9W8 422 aa4.64□□□□□ -1.67
HMGB1P28-201ENST00000507778 AFG1LQ8WV93 481 aa4.64□□□□□ -1.67
HMGB1P28-201ENST00000507778 HMGB4Q8WW32 186 aa4.64□□□□□ -1.67
HMGB1P28-201ENST00000507778 NEU4Q8WWR8 484 aaPredicted RBP4.64□□□□□ -1.67
HMGB1P28-201ENST00000507778 THAP4Q8WY91 577 aa4.64□□□□□ -1.67
HMGB1P28-201ENST00000507778 CPT1BQ92523 772 aa4.64□□□□□ -1.67
HMGB1P28-201ENST00000507778 MCRS1Q96EZ8 462 aa4.64□□□□□ -1.67
HMGB1P28-201ENST00000507778 UBXN10Q96LJ8 280 aa4.64□□□□□ -1.67
HMGB1P28-201ENST00000507778 LENG8Q96PV6 779 aaPredicted RBP4.64□□□□□ -1.67
HMGB1P28-201ENST00000507778 PRRX2Q99811 253 aa4.64□□□□□ -1.67
HMGB1P28-201ENST00000507778 CINPQ9BW66 212 aaPredicted RBP4.64□□□□□ -1.67
HMGB1P28-201ENST00000507778 FSD1LQ9BXM9 530 aa4.64□□□□□ -1.67
HMGB1P28-201ENST00000507778 CCDC134Q9H6E4 229 aa4.64□□□□□ -1.67
HMGB1P28-201ENST00000507778 LIN7CQ9NUP9 197 aaKnown RBP4.64□□□□□ -1.67
HMGB1P28-201ENST00000507778 NDUFAF4Q9P032 175 aa4.64□□□□□ -1.67
HMGB1P28-201ENST00000507778 FOXJ2Q9P0K8 574 aa4.64□□□□□ -1.67
HMGB1P28-201ENST00000507778 PCDHB7Q9Y5E2 793 aa4.64□□□□□ -1.67
HMGB1P28-201ENST00000507778 GXYLT2A0PJZ3 443 aa4.63□□□□□ -1.67
HMGB1P28-201ENST00000507778 B9A039 149 aa4.63□□□□□ -1.67
HMGB1P28-201ENST00000507778 GCOM1H8Y6P7 765 aaPredicted RBP4.63□□□□□ -1.67
HMGB1P28-201ENST00000507778 EIF3FO00303 357 aaPredicted RBP4.63□□□□□ -1.67
HMGB1P28-201ENST00000507778 TMIGD3P0DMS9 266 aaPredicted RBP4.63□□□□□ -1.67
HMGB1P28-201ENST00000507778 TNFRSF1AP19438 455 aa4.63□□□□□ -1.67
HMGB1P28-201ENST00000507778 RARRES1P49788 294 aa4.63□□□□□ -1.67
HMGB1P28-201ENST00000507778 CCT8P50990 548 aa4.63□□□□□ -1.67
HMGB1P28-201ENST00000507778 PAPOLAP51003 745 aaKnown RBP4.63□□□□□ -1.67
HMGB1P28-201ENST00000507778 PRKAA2P54646 552 aa4.63□□□□□ -1.67
HMGB1P28-201ENST00000507778 KRTAP10-2P60368 255 aa4.63□□□□□ -1.67
HMGB1P28-201ENST00000507778 TXNL4AP83876 142 aaKnown RBP4.63□□□□□ -1.67
HMGB1P28-201ENST00000507778 PSG6Q00889 435 aa4.63□□□□□ -1.67
HMGB1P28-201ENST00000507778 CCDC15Q0P6D6 951 aa4.63□□□□□ -1.67
HMGB1P28-201ENST00000507778 SF3A3Q12874 501 aaKnown RBP eCLIP4.63□□□□□ -1.67
HMGB1P28-201ENST00000507778 CBFBQ13951 182 aa4.63□□□□□ -1.67
HMGB1P28-201ENST00000507778 PUM1Q14671 1186 aaKnown RBP eCLIP4.63□□□□□ -1.67
HMGB1P28-201ENST00000507778 FAM153CQ494X1 144 aa4.63□□□□□ -1.67
HMGB1P28-201ENST00000507778 ALFQ53S48 1182 aa4.63□□□□□ -1.67
HMGB1P28-201ENST00000507778 TTC22Q5TAA0 569 aa4.63□□□□□ -1.67
HMGB1P28-201ENST00000507778 ZNF627Q7L945 461 aa4.63□□□□□ -1.67
HMGB1P28-201ENST00000507778 C2CD5Q86YS7 1000 aa4.63□□□□□ -1.67
HMGB1P28-201ENST00000507778 CSGALNACT1Q8TDX6 532 aa4.63□□□□□ -1.67
HMGB1P28-201ENST00000507778 REXO5Q96IC2 774 aaKnown RBP4.63□□□□□ -1.67
HMGB1P28-201ENST00000507778 THAP7Q9BT49 309 aaPredicted RBP4.63□□□□□ -1.67
HMGB1P28-201ENST00000507778 TOR3AQ9H497 397 aa4.63□□□□□ -1.67
HMGB1P28-201ENST00000507778 SAP30LQ9HAJ7 183 aa4.63□□□□□ -1.67
HMGB1P28-201ENST00000507778 USP29Q9HBJ7 922 aa4.63□□□□□ -1.67
HMGB1P28-201ENST00000507778 VPS45Q9NRW7 570 aa4.63□□□□□ -1.67
HMGB1P28-201ENST00000507778 RRN3Q9NYV6 651 aa4.63□□□□□ -1.67
HMGB1P28-201ENST00000507778 C9orf78Q9NZ63 289 aaPredicted RBP4.63□□□□□ -1.67
HMGB1P28-201ENST00000507778 ZBTB1Q9Y2K1 713 aa4.63□□□□□ -1.67
HMGB1P28-201ENST00000507778 UBE2J1Q9Y385 318 aaPredicted RBP4.63□□□□□ -1.67
HMGB1P28-201ENST00000507778 E7EVH7 732 aa4.62□□□□□ -1.67
HMGB1P28-201ENST00000507778 SUV39H1O43463 412 aa4.62□□□□□ -1.67
HMGB1P28-201ENST00000507778 KRT38O76015 456 aa4.62□□□□□ -1.67
HMGB1P28-201ENST00000507778 PDE8BO95263 885 aa4.62□□□□□ -1.67
HMGB1P28-201ENST00000507778 ALADP13716 330 aa4.62□□□□□ -1.67
HMGB1P28-201ENST00000507778 TACR2P21452 398 aa4.62□□□□□ -1.67
HMGB1P28-201ENST00000507778 FPR3P25089 353 aa4.62□□□□□ -1.67
HMGB1P28-201ENST00000507778 SERPINA4P29622 427 aa4.62□□□□□ -1.67
HMGB1P28-201ENST00000507778 THBS4P35443 961 aa4.62□□□□□ -1.67
HMGB1P28-201ENST00000507778 PLA2G5P39877 138 aa4.62□□□□□ -1.67
HMGB1P28-201ENST00000507778 ACTR2P61160 394 aa4.62□□□□□ -1.67
HMGB1P28-201ENST00000507778 POU5F1BQ06416 359 aa4.62□□□□□ -1.67
HMGB1P28-201ENST00000507778 LMAN2Q12907 356 aa4.62□□□□□ -1.67
HMGB1P28-201ENST00000507778 AAK1Q2M2I8 961 aa4.62□□□□□ -1.67
HMGB1P28-201ENST00000507778 TBRG1Q3YBR2 411 aa4.62□□□□□ -1.67
HMGB1P28-201ENST00000507778 ACSM6Q6P461 480 aa4.62□□□□□ -1.67
HMGB1P28-201ENST00000507778 Q6ZPA2 131 aa4.62□□□□□ -1.67
HMGB1P28-201ENST00000507778 ZNF804AQ7Z570 1209 aa4.62□□□□□ -1.67
HMGB1P28-201ENST00000507778 GRASPQ7Z6J2 395 aaPredicted RBP4.62□□□□□ -1.67
HMGB1P28-201ENST00000507778 HERC6Q8IVU3 1022 aa4.62□□□□□ -1.67
HMGB1P28-201ENST00000507778 PAF1Q8N7H5 531 aa4.62□□□□□ -1.67
HMGB1P28-201ENST00000507778 C12orf76Q8N812 135 aaPredicted RBP4.62□□□□□ -1.67
HMGB1P28-201ENST00000507778 GOLGA1Q92805 767 aa4.62□□□□□ -1.67
HMGB1P28-201ENST00000507778 USP13Q92995 863 aaPredicted RBP4.62□□□□□ -1.67
HMGB1P28-201ENST00000507778 RILPL2Q969X0 211 aa4.62□□□□□ -1.67
HMGB1P28-201ENST00000507778 PRR11Q96HE9 360 aaPredicted RBP4.62□□□□□ -1.67
HMGB1P28-201ENST00000507778 FAR2Q96K12 515 aa4.62□□□□□ -1.67
HMGB1P28-201ENST00000507778 TBATAQ96M53 351 aa4.62□□□□□ -1.67
HMGB1P28-201ENST00000507778 PYM1Q9BRP8 204 aaKnown RBP4.62□□□□□ -1.67
HMGB1P28-201ENST00000507778 MECRQ9BV79 373 aa4.62□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms