RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-212ENST00000496458 VPS4AQ9UN37 437 aa6.64□□□□□ -1.35
SF3B1-212ENST00000496458 PCDHB2Q9Y5E7 798 aa6.64□□□□□ -1.35
SF3B1-212ENST00000496458 FAM234BA2RU67 622 aa6.63□□□□□ -1.35
SF3B1-212ENST00000496458 E5RJQ4 531 aa6.63□□□□□ -1.35
SF3B1-212ENST00000496458 MBPP02686 304 aaPredicted RBP6.63□□□□□ -1.35
SF3B1-212ENST00000496458 EGR1P18146 543 aa6.63□□□□□ -1.35
SF3B1-212ENST00000496458 NEK3P51956 506 aa6.63□□□□□ -1.35
SF3B1-212ENST00000496458 JAK3P52333 1124 aa6.63□□□□□ -1.35
SF3B1-212ENST00000496458 RAE1P78406 368 aaKnown RBP6.63□□□□□ -1.35
SF3B1-212ENST00000496458 PICALMQ13492 652 aa6.63□□□□□ -1.35
SF3B1-212ENST00000496458 BFSP2Q13515 415 aa6.63□□□□□ -1.35
SF3B1-212ENST00000496458 KPNB1Q14974 876 aaKnown RBP6.63□□□□□ -1.35
SF3B1-212ENST00000496458 SLC5A9Q2M3M2 681 aa6.63□□□□□ -1.35
SF3B1-212ENST00000496458 Q4G0T1 1027 aa6.63□□□□□ -1.35
SF3B1-212ENST00000496458 TMEM196Q5HYL7 178 aa6.63□□□□□ -1.35
SF3B1-212ENST00000496458 KRTAP5-3Q6L8H2 238 aa6.63□□□□□ -1.35
SF3B1-212ENST00000496458 OR2C3Q8N628 320 aa6.63□□□□□ -1.35
SF3B1-212ENST00000496458 GLIS1Q8NBF1 620 aa6.63□□□□□ -1.35
SF3B1-212ENST00000496458 PRSS3P2Q8NHM4 247 aa6.63□□□□□ -1.35
SF3B1-212ENST00000496458 EIF2AQ9BY44 585 aaKnown RBP6.63□□□□□ -1.35
SF3B1-212ENST00000496458 RGL1Q9NZL6 768 aa6.63□□□□□ -1.35
SF3B1-212ENST00000496458 MAFFQ9ULX9 164 aa6.63□□□□□ -1.35
SF3B1-212ENST00000496458 PHTF1Q9UMS5 762 aa6.63□□□□□ -1.35
SF3B1-212ENST00000496458 FGF18O76093 207 aa6.62□□□□□ -1.35
SF3B1-212ENST00000496458 TOP3BO95985 862 aaKnown RBP6.62□□□□□ -1.35
SF3B1-212ENST00000496458 AK2P54819 239 aa6.62□□□□□ -1.35
SF3B1-212ENST00000496458 WDR5P61964 334 aaKnown RBP6.62□□□□□ -1.35
SF3B1-212ENST00000496458 GHRHRQ02643 423 aa6.62□□□□□ -1.35
SF3B1-212ENST00000496458 ATP1A4Q13733 1029 aa6.62□□□□□ -1.35
SF3B1-212ENST00000496458 KCNJ12Q14500 433 aa6.62□□□□□ -1.35
SF3B1-212ENST00000496458 PFKFB3Q16875 520 aaPredicted RBP6.62□□□□□ -1.35
SF3B1-212ENST00000496458 FBXO38Q6PIJ6 1188 aa6.62□□□□□ -1.35
SF3B1-212ENST00000496458 KRT73Q86Y46 540 aa6.62□□□□□ -1.35
SF3B1-212ENST00000496458 SCARB1Q8WTV0 552 aa6.62□□□□□ -1.35
SF3B1-212ENST00000496458 BRI3BPQ8WY22 251 aa6.62□□□□□ -1.35
SF3B1-212ENST00000496458 ZNF566Q969W8 418 aa6.62□□□□□ -1.35
SF3B1-212ENST00000496458 CCDC138Q96M89 665 aa6.62□□□□□ -1.35
SF3B1-212ENST00000496458 GDF15Q99988 308 aa6.62□□□□□ -1.35
SF3B1-212ENST00000496458 VPS16Q9H269 839 aa6.62□□□□□ -1.35
SF3B1-212ENST00000496458 CERS4Q9HA82 394 aa6.62□□□□□ -1.35
SF3B1-212ENST00000496458 CEP83Q9Y592 693 aa6.62□□□□□ -1.35
SF3B1-212ENST00000496458 SETD1BQ9UPS6 1966 aaKnown RBP6.61□□□□□ -1.35
SF3B1-212ENST00000496458 PODXLO00592 558 aa6.61□□□□□ -1.35
SF3B1-212ENST00000496458 EEF1GP26641 437 aaKnown RBP6.61□□□□□ -1.35
SF3B1-212ENST00000496458 YPEL5P62699 121 aa6.61□□□□□ -1.35
SF3B1-212ENST00000496458 TRIP6Q15654 476 aaKnown RBP6.61□□□□□ -1.35
SF3B1-212ENST00000496458 PAPD7Q5XG87 772 aaKnown RBP6.61□□□□□ -1.35
SF3B1-212ENST00000496458 C11orf87Q6NUJ2 197 aa6.61□□□□□ -1.35
SF3B1-212ENST00000496458 GADD45GIP1Q8TAE8 222 aaPredicted RBP6.61□□□□□ -1.35
SF3B1-212ENST00000496458 CUL5Q93034 780 aa6.61□□□□□ -1.35
SF3B1-212ENST00000496458 SPRTNQ9H040 489 aaPredicted RBP6.61□□□□□ -1.35
SF3B1-212ENST00000496458 TRNAU1APQ9NX07 287 aaKnown RBP6.61□□□□□ -1.35
SF3B1-212ENST00000496458 TUBA8Q9NY65 449 aaPredicted RBP6.61□□□□□ -1.35
SF3B1-212ENST00000496458 ADAM10O14672 748 aa6.6□□□□□ -1.35
SF3B1-212ENST00000496458 VIPP01282 170 aa6.6□□□□□ -1.35
SF3B1-212ENST00000496458 MAPKAPK3Q16644 382 aa6.6□□□□□ -1.35
SF3B1-212ENST00000496458 P3H1Q32P28 736 aa6.6□□□□□ -1.35
SF3B1-212ENST00000496458 IZUMO3Q5VZ72 239 aa6.6□□□□□ -1.35
SF3B1-212ENST00000496458 FAM90A2PQ658T7 463 aa6.6□□□□□ -1.35
SF3B1-212ENST00000496458 NUAK2Q9H093 628 aa6.6□□□□□ -1.35
SF3B1-212ENST00000496458 TMEM8AQ9HCN3 771 aa6.6□□□□□ -1.35
SF3B1-212ENST00000496458 ABHD10Q9NUJ1 306 aa6.6□□□□□ -1.35
SF3B1-212ENST00000496458 ARL8BQ9NVJ2 186 aa6.6□□□□□ -1.35
SF3B1-212ENST00000496458 FNIP2Q9P278 1114 aa6.6□□□□□ -1.35
SF3B1-212ENST00000496458 PCDHGB2Q9Y5G2 931 aa6.6□□□□□ -1.35
SF3B1-212ENST00000496458 OR2W5A6NFC9 320 aa6.59□□□□□ -1.35
SF3B1-212ENST00000496458 SRGAP2BP0DMP2 458 aa6.59□□□□□ -1.35
SF3B1-212ENST00000496458 TACR3P29371 465 aa6.59□□□□□ -1.35
SF3B1-212ENST00000496458 GSTM5P46439 218 aa6.59□□□□□ -1.35
SF3B1-212ENST00000496458 ZNF91Q05481 1191 aa6.59□□□□□ -1.35
SF3B1-212ENST00000496458 NSUN2Q08J23 767 aaKnown RBP eCLIP6.59□□□□□ -1.35
SF3B1-212ENST00000496458 SEMA3BQ13214 749 aa6.59□□□□□ -1.35
SF3B1-212ENST00000496458 CCDC181Q5TID7 509 aa6.59□□□□□ -1.35
SF3B1-212ENST00000496458 CCSAPQ6IQ19 270 aaPredicted RBP6.59□□□□□ -1.35
SF3B1-212ENST00000496458 ANO7Q6IWH7 933 aa6.59□□□□□ -1.35
SF3B1-212ENST00000496458 CLASRPQ8N2M8 674 aaKnown RBP6.59□□□□□ -1.35
SF3B1-212ENST00000496458 KIAA1191Q96A73 305 aa6.59□□□□□ -1.35
SF3B1-212ENST00000496458 EIF3CQ99613 913 aaKnown RBP6.59□□□□□ -1.35
SF3B1-212ENST00000496458 MYD88Q99836 296 aa6.59□□□□□ -1.35
SF3B1-212ENST00000496458 SEMA5BQ9P283 1151 aa6.59□□□□□ -1.35
SF3B1-212ENST00000496458 PI4KBQ9UBF8 816 aa6.59□□□□□ -1.35
SF3B1-212ENST00000496458 SPATA31A1Q5TZJ5 1347 aa6.58□□□□□ -1.36
SF3B1-212ENST00000496458 ZNF521Q96K83 1311 aa6.58□□□□□ -1.36
SF3B1-212ENST00000496458 MOSPD3O75425 235 aa6.58□□□□□ -1.36
SF3B1-212ENST00000496458 HOXD9P28356 352 aaPredicted RBP6.58□□□□□ -1.36
SF3B1-212ENST00000496458 IGHMBP2P38935 993 aaKnown RBP6.58□□□□□ -1.36
SF3B1-212ENST00000496458 HSPA7P48741 367 aa6.58□□□□□ -1.36
SF3B1-212ENST00000496458 RABEP1Q15276 862 aa6.58□□□□□ -1.36
SF3B1-212ENST00000496458 CNGA3Q16281 694 aa6.58□□□□□ -1.36
SF3B1-212ENST00000496458 MPEG1Q2M385 716 aa6.58□□□□□ -1.36
SF3B1-212ENST00000496458 PXDC1Q5TGL8 231 aa6.58□□□□□ -1.36
SF3B1-212ENST00000496458 TLDC1Q6P9B6 456 aa6.58□□□□□ -1.36
SF3B1-212ENST00000496458 TNIP3Q96KP6 325 aa6.58□□□□□ -1.36
SF3B1-212ENST00000496458 ELOVL5Q9NYP7 299 aa6.58□□□□□ -1.36
SF3B1-212ENST00000496458 HEMK1Q9Y5R4 338 aaPredicted RBP6.58□□□□□ -1.36
SF3B1-212ENST00000496458 C16orf96A6NNT2 1141 aa6.57□□□□□ -1.36
SF3B1-212ENST00000496458 RRHO14718 337 aa6.57□□□□□ -1.36
SF3B1-212ENST00000496458 PPEF2O14830 753 aa6.57□□□□□ -1.36
SF3B1-212ENST00000496458 ALADP13716 330 aa6.57□□□□□ -1.36
SF3B1-212ENST00000496458 DUSP1P28562 367 aa6.57□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms